FvH4_3g28524

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
21544112 .. 21546480
2369 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28524.t1

Sequence Viewer

Length: 1455 bp
ATGCGTTCTGCCACAACTCCACAAAAACAAGCAAACCTTTTATCTCTGGGAGTTGTATTCAAATCTCTAGCATTGTTAATCTTAATCCTAATAACTTTTTACATTTCAAGCTTAATCCTAACATCGGTATATATTTTGCAACCTACCGATCTTCTTAGAAGCTTGCAACAAAATTTCTCAGCCCCGCCGGCTACAGGTCCCCCCGATCACCCTCGTACCGATTTAAGACACATTGTGATCGGAATGGTTGGCTCTGTCAAGACATTGAGGCACAAAACAGCTTACATTAAAGCATGGTGGCGGCCTAATGTCACTCGAGGATACCTCTTTTTGGATGAAGCTCCACCCGCAGAGTTTTTGCCTTGGCCTTCATCTTATCCTCCTTTTCGTGTCAATGACGATGTCACCAAATTAAAAGTGTACCCGAAAATATTGAATCCGATCCAAGTACGAATAGTGCGTTCGATTTTGGAGATATTTAGAGAGCGTGACAAAGGTGTAAGATGGTATGTAATGTCGGATGATGACACCGTTTTTGTGGTTGATAATTTGGTGGAAGTTCTAGCAAAGTATGACCATACTAAGTACCATTACATTGGCACACGATCGGAGTTTGTCAAGTCTAATTCCGATTTTTCGTTTGATATGGCATTCGGTGGAGCTGGTTATATTTTGAGTTACCCTCTGGTGGCTGCATTGTCGACAAAGTTGGACGACTGTATTGATAGATATTCCTATTCTTGGTTTAGCGATTTGACATTACACGAATGTTTAACCGATTTAGGAGTCACTCTAACTCAAGAAAATGGCCTTCACCAGATTGATCTTCGTGGTGACGTATCAGGTCTTCTATCGGCTCATCCACAATCTCCATTCCTCTCCATCCACCACCTTGACACTGTTAACCCAATTTTCCCTTCCATGAACCGCTCCGAGTCCATTAACCACCTCATGAAAGCTGCAAAAGTCGATCCTTCTCGTCTTCTTCAACAAACCATATGCTACCACAGACCAAGTAACTGGTCTTTCTCAATCTCATGGGGCTACTCTGCTCACATTTACGAAAGCATACTCCCCCGGAGCACCTTAAGGAAACCCCTCGAGACATTCTCGCGTTGGAGAAACGCAAGCCAACCGTTCTACATGTTTAACACCAGGTTGCCATCAAAGAATCCATGTCAAGCTCCCCATGTGTTTTATTTTGATTCTGTTCATCATCGTGTCGATGGAGGGAAGAGGAGGACTGTTACGACTTATTCAAGAGTAGCGCCTCGTGGTTTGAGGTCATGTTCTTCAACTGGTAACCACTCTGCGGATTCCATCACCAAAATTGAGGTCTATTCATCGCCAGAAGTACGGTTGGAGATGGGAGGAAAGGACTGCTGCGACATAGTACATGCAAACAATACTCGAGTCATATACAGGTCTTGCATGAAGGGTGAAGTTATTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

485

Amino Acids

55.04

Weight (kDa)

9.15

Isoelectric Point (pI)

54.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 158 - 273 1.7e-14 Fringe-like
DUF604 PF04646 209 - 451 5.4e-96 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 930
AccI GTMKAC 1 cut(s) 701
AccII CGCG 1 cut(s) 1114
AciI CCGC 5 cut(s) 185, 301, 348, 928, 1313
AclWI GGATC 2 cut(s) 436, 965
AcsI RAATTY 1 cut(s) 172
AdeI CACNNNGTG 1 cut(s) 235
AfaI GTAC 6 cut(s) 217, 422, 450, 587, 1356, 1395
AfiI CCNNNNNNNGG 6 cut(s) 124, 194, 331, 688, 741, 1312
AflII CTTAAG 1 cut(s) 1087
AflIII ACRYGT 1 cut(s) 1143
AgsI TTSAA 6 cut(s) 61, 108, 436, 989, 1260, 1296
AjnI CCWGG 1 cut(s) 1154
AjuI GAANNNNNNNTTGG 2 cut(s) 901, 933
AluBI AGCT 7 cut(s) 111, 162, 281, 341, 662, 959, 1184
AluI AGCT 7 cut(s) 111, 162, 281, 341, 662, 959, 1184
Alw21I GWGCWC 1 cut(s) 1085
Alw26I GTCTC 1 cut(s) 1097
AlwI GGATC 2 cut(s) 436, 965
Ama87I CYCGRG 3 cut(s) 315, 1100, 1410
AoxI GGCC 3 cut(s) 302, 365, 808
ApeKI GCWGC 3 cut(s) 692, 959, 1383
ApoI RAATTY 1 cut(s) 172
ArsI GACNNNNNNTTYG 4 cut(s) 518, 550, 1320, 1352
AspLEI GCGC 1 cut(s) 1270
AspS9I GGNCC 1 cut(s) 197
AsuC2I CCSGG 1 cut(s) 1078
AsuHPI GGTGA 6 cut(s) 200, 397, 806, 845, 1315, 1451
AvaI CYCGRG 3 cut(s) 315, 1100, 1410
AvaII GGWCC 1 cut(s) 197
BaeI ACNNNNGTAYC 2 cut(s) 199, 232
BarI GAAGNNNNNNTAC 2 cut(s) 831, 863
BauI CACGAG 1 cut(s) 1272
BbsI GAAGAC 2 cut(s) 839, 974
Bbv12I GWGCWC 1 cut(s) 1085
BbvI GCAGC 3 cut(s) 679, 946, 1370
BccI CCATC 6 cut(s) 498, 890, 1171, 1220, 1328, 1360
BciT130I CCWGG 1 cut(s) 1156
BciVI GTATCC 1 cut(s) 314
BcnI CCSGG 1 cut(s) 1078
BcoDI GTCTC 1 cut(s) 1097
BfaI CTAG 2 cut(s) 68, 563
BfmI CTRYAG 1 cut(s) 192
BfoI RGCGCY 1 cut(s) 1271
BfrI CTTAAG 1 cut(s) 1087
BfuI GTATCC 1 cut(s) 314
BglI GCCNNNNNGGC 1 cut(s) 188
BisI GCNGC 4 cut(s) 302, 693, 960, 1384
BlsI GCNGC 4 cut(s) 303, 694, 961, 1385
Bme1390I CCNGG 2 cut(s) 1078, 1156
Bme18I GGWCC 1 cut(s) 197
BmeT110I CYCGRG 3 cut(s) 315, 1100, 1410
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 2 cut(s) 1078, 1156
BpiI GAAGAC 2 cut(s) 839, 974
BplI GAGNNNNNCTC 6 cut(s) 309, 341, 667, 699, 1094, 1126
BpuEI CTTGAG 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 1078
BsaJI CCNNGG 2 cut(s) 362, 1076
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 194, 331, 688, 741, 1312
Bse118I RCCGGY 1 cut(s) 187
Bse1I ACTGG 2 cut(s) 1025, 1303
BseBI CCWGG 1 cut(s) 1156
BseDI CCNNGG 2 cut(s) 362, 1076
BseGI GGATG 4 cut(s) 340, 526, 859, 882
BseLI CCNNNNNNNGG 6 cut(s) 124, 194, 331, 688, 741, 1312
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 2 cut(s) 1025, 1303
BseRI GAGGAG 1 cut(s) 1252
BseXI GCAGC 3 cut(s) 679, 946, 1370
Bsh1236I CGCG 1 cut(s) 1114
Bsh1285I CGRYCG 1 cut(s) 608
BshFI GGCC 3 cut(s) 304, 367, 810
BsiEI CGRYCG 1 cut(s) 608
BsiHKAI GWGCWC 1 cut(s) 1085
BsiHKCI CYCGRG 3 cut(s) 315, 1100, 1410
BsiSI CCGG 2 cut(s) 188, 1078
BslFI GGGAC 1 cut(s) 183
BslI CCNNNNNNNGG 6 cut(s) 124, 194, 331, 688, 741, 1312
BsmAI GTCTC 1 cut(s) 1097
BsmFI GGGAC 1 cut(s) 183
BsmI GAATGC 1 cut(s) 650
BsnI GGCC 3 cut(s) 304, 367, 810
BsoBI CYCGRG 3 cut(s) 315, 1100, 1410
Bsp1286I GDGCHC 1 cut(s) 1085
Bsp143I GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
BspACI CCGC 5 cut(s) 185, 301, 348, 928, 1313
BspANI GGCC 3 cut(s) 304, 367, 810
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 1 cut(s) 1114
BspHI TCATGA 1 cut(s) 951
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 2 cut(s) 436, 965
BspTI CTTAAG 1 cut(s) 1087
BsrBI CCGCTC 1 cut(s) 930
BsrFI RCCGGY 1 cut(s) 187
BsrI ACTGG 2 cut(s) 1025, 1303
BssAI RCCGGY 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 362, 1076
BssMI GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
BssSI CACGAG 1 cut(s) 1272
BssT1I CCWWGG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 1272
Bst2UI CCWGG 1 cut(s) 1156
Bst4CI ACNGT 6 cut(s) 532, 719, 901, 1137, 1246, 1359
Bst6I CTCTTC 1 cut(s) 1229
BstAFI CTTAAG 1 cut(s) 1087
BstC8I GCNNGC 3 cut(s) 164, 189, 1129
BstDEI CTNAG 3 cut(s) 155, 178, 582
BstEII GGTNACC 1 cut(s) 1301
BstF5I GGATG 4 cut(s) 340, 526, 859, 882
BstFNI CGCG 1 cut(s) 1114
BstH2I RGCGCY 1 cut(s) 1271
BstHHI GCGC 1 cut(s) 1270
BstKTI GATC 7 cut(s) 151, 208, 240, 444, 608, 826, 973
BstMAI GTCTC 1 cut(s) 1097
BstMBI GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
BstMCI CGRYCG 1 cut(s) 608
BstMWI GCNNNNNNNGC 2 cut(s) 188, 347
BstNI CCWGG 1 cut(s) 1156
BstNSI RCATGY 2 cut(s) 1147, 1400
BstPI GGTNACC 1 cut(s) 1301
BstSCI CCNGG 2 cut(s) 1076, 1154
BstSFI CTRYAG 1 cut(s) 192
BstUI CGCG 1 cut(s) 1114
BstV1I GCAGC 3 cut(s) 679, 946, 1370
BstV2I GAAGAC 2 cut(s) 839, 974
BstXI CCANNNNNNTGG 2 cut(s) 596, 1020
BsuI GTATCC 1 cut(s) 314
BsuRI GGCC 3 cut(s) 304, 367, 810
BtgZI GCGATG 1 cut(s) 1329
BtsCI GGATG 4 cut(s) 340, 526, 859, 882
BtsIMutI CAGTG 1 cut(s) 897
Cac8I GCNNGC 3 cut(s) 164, 189, 1129
CciI TCATGA 1 cut(s) 951
CfoI GCGC 1 cut(s) 1270
Cfr10I RCCGGY 1 cut(s) 187
Cfr13I GGNCC 1 cut(s) 197
CsiI ACCWGGT 1 cut(s) 1154
Csp6I GTAC 6 cut(s) 216, 421, 449, 586, 1355, 1394
CviQI GTAC 6 cut(s) 216, 421, 449, 586, 1355, 1394
DdeI CTNAG 3 cut(s) 155, 178, 582
DpnI GATC 7 cut(s) 150, 207, 239, 443, 607, 825, 972
DpnII GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
DraIII CACNNNGTG 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 1229
EarI CTCTTC 1 cut(s) 1229
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 1 cut(s) 197
Eco88I CYCGRG 3 cut(s) 315, 1100, 1410
Eco91I GGTNACC 1 cut(s) 1301
EcoO109I RGGNCCY 1 cut(s) 197
EcoO65I GGTNACC 1 cut(s) 1301
EcoRII CCWGG 1 cut(s) 1154
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FalI AAGNNNNNCTT 2 cut(s) 21, 53
FaqI GGGAC 1 cut(s) 183
FauI CCCGC 2 cut(s) 192, 355
FauNDI CATATG 1 cut(s) 998
FblI GTMKAC 1 cut(s) 701
Fnu4HI GCNGC 4 cut(s) 302, 693, 960, 1384
FokI GGATG 4 cut(s) 347, 533, 846, 869
Fsp4HI GCNGC 4 cut(s) 302, 693, 960, 1384
FspBI CTAG 2 cut(s) 68, 563
GlaI GCGC 1 cut(s) 1269
GluI GCNGC 4 cut(s) 302, 693, 960, 1384
HaeII RGCGCY 1 cut(s) 1271
HaeIII GGCC 3 cut(s) 304, 367, 810
HapII CCGG 2 cut(s) 188, 1078
HhaI GCGC 1 cut(s) 1270
Hin6I GCGC 1 cut(s) 1268
HinP1I GCGC 1 cut(s) 1268
HincII GTYRAC 2 cut(s) 702, 904
HindII GTYRAC 2 cut(s) 702, 904
HindIII AAGCTT 2 cut(s) 109, 160
HinfI GANTC 7 cut(s) 436, 786, 935, 1171, 1205, 1316, 1413
HpaI GTTAAC 1 cut(s) 904
HpaII CCGG 2 cut(s) 188, 1078
HphI GGTGA 6 cut(s) 200, 397, 806, 845, 1315, 1451
Hpy166II GTNNAC 3 cut(s) 421, 702, 904
Hpy188I TCNGA 6 cut(s) 242, 441, 520, 610, 631, 934
Hpy188III TCNNGA 5 cut(s) 259, 800, 952, 1102, 1260
Hpy8I GTNNAC 3 cut(s) 421, 702, 904
HpyAV CCTTC 5 cut(s) 378, 821, 927, 984, 1429
HpyCH4III ACNGT 6 cut(s) 532, 719, 901, 1137, 1246, 1359
HpyCH4IV ACGT 1 cut(s) 837
HpyCH4V TGCA 7 cut(s) 139, 166, 695, 962, 1400, 1431, 1451
HpyF10VI GCNNNNNNNGC 2 cut(s) 188, 347
HpyF3I CTNAG 3 cut(s) 155, 178, 582
HpySE526I ACGT 1 cut(s) 837
HspAI GCGC 1 cut(s) 1268
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
KspAI GTTAAC 1 cut(s) 904
Kzo9I GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
LmnI GCTCC 5 cut(s) 346, 659, 935, 1080, 1189
Lsp1109I GCAGC 3 cut(s) 679, 946, 1370
MabI ACCWGGT 1 cut(s) 1154
MaeI CTAG 2 cut(s) 68, 563
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 9 cut(s) 310, 403, 488, 677, 787, 833, 1016, 1246, 1301
MalI GATC 7 cut(s) 150, 207, 239, 443, 607, 825, 972
MbiI CCGCTC 1 cut(s) 930
MboI GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
MboII GAAGA 7 cut(s) 143, 818, 839, 974, 977, 1246, 1284
MhlI GDGCHC 1 cut(s) 1085
MluCI AATT 6 cut(s) 172, 410, 547, 625, 909, 1329
MlyI GAGTC 3 cut(s) 795, 944, 1422
MmeI TCCRAC 4 cut(s) 498, 690, 1097, 1341
MroNI GCCGGC 1 cut(s) 187
MslI CAYNNNNRTG 1 cut(s) 1218
MspCI CTTAAG 1 cut(s) 1087
MspI CCGG 2 cut(s) 188, 1078
MspR9I CCNGG 2 cut(s) 1078, 1156
Mva1269I GAATGC 1 cut(s) 650
MvaI CCWGG 1 cut(s) 1156
MvnI CGCG 1 cut(s) 1114
MwoI GCNNNNNNNGC 2 cut(s) 188, 347
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 1 cut(s) 1078
NdeI CATATG 1 cut(s) 998
NdeII GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
NgoMIV GCCGGC 1 cut(s) 187
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 5 cut(s) 310, 403, 488, 787, 833
NspI RCATGY 2 cut(s) 1147, 1400
PaeR7I CTCGAG 3 cut(s) 315, 1100, 1410
PagI TCATGA 1 cut(s) 951
PciI ACATGT 1 cut(s) 1143
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PctI GAATGC 1 cut(s) 650
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 4 cut(s) 436, 1171, 1205, 1316
PflFI GACNNNGTC 1 cut(s) 401
PkrI GCNGC 4 cut(s) 303, 694, 961, 1385
Ple19I CGATCG 1 cut(s) 608
PleI GAGTC 3 cut(s) 794, 943, 1421
PpsI GAGTC 3 cut(s) 794, 943, 1421
PpuMI RGGWCCY 1 cut(s) 197
PscI ACATGT 1 cut(s) 1143
Psp5II RGGWCCY 1 cut(s) 197
Psp6I CCWGG 1 cut(s) 1154
PspEI GGTNACC 1 cut(s) 1301
PspGI CCWGG 1 cut(s) 1154
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 197
PspPPI RGGWCCY 1 cut(s) 197
PspXI VCTCGAGB 2 cut(s) 315, 1410
PsyI GACNNNGTC 1 cut(s) 401
PvuI CGATCG 1 cut(s) 608
RsaI GTAC 6 cut(s) 217, 422, 450, 587, 1356, 1395
RsaNI GTAC 6 cut(s) 216, 421, 449, 586, 1355, 1394
RseI CAYNNNNRTG 1 cut(s) 1218
SalI GTCGAC 1 cut(s) 700
SatI GCNGC 4 cut(s) 302, 693, 960, 1384
Sau3AI GATC 7 cut(s) 148, 205, 237, 441, 605, 823, 970
Sau96I GGNCC 1 cut(s) 197
SchI GAGTC 3 cut(s) 795, 944, 1422
ScrFI CCNGG 2 cut(s) 1078, 1156
SduI GDGCHC 1 cut(s) 1085
SexAI ACCWGGT 1 cut(s) 1154
SfcI CTRYAG 1 cut(s) 192
Sfr274I CTCGAG 3 cut(s) 315, 1100, 1410
SinI GGWCC 1 cut(s) 197
SlaI CTCGAG 3 cut(s) 315, 1100, 1410
SmiMI CAYNNNNRTG 1 cut(s) 1218
SmlI CTYRAG 5 cut(s) 315, 798, 1087, 1100, 1410
SmoI CTYRAG 5 cut(s) 315, 798, 1087, 1100, 1410
Sse9I AATT 6 cut(s) 172, 410, 547, 625, 909, 1329
SsiI CCGC 5 cut(s) 185, 301, 348, 928, 1313
SspI AATATT 1 cut(s) 432
SspMI CTAG 2 cut(s) 68, 563
StyD4I CCNGG 2 cut(s) 1076, 1154
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 6 cut(s) 532, 719, 901, 1137, 1246, 1359
TaiI ACGT 1 cut(s) 840
TaqI TCGA 7 cut(s) 316, 464, 701, 969, 1101, 1224, 1411
TasI AATT 6 cut(s) 172, 410, 547, 625, 909, 1329
TatI WGTACW 1 cut(s) 1393
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 4 cut(s) 436, 1171, 1205, 1316
TscAI CASTG 1 cut(s) 904
TseFI GTSAC 5 cut(s) 310, 403, 488, 787, 833
TseI GCWGC 3 cut(s) 692, 959, 1383
Tsp45I GTSAC 5 cut(s) 310, 403, 488, 787, 833
TspDTI ATGAA 7 cut(s) 351, 360, 938, 968, 1202, 1332, 1448
TspRI CASTG 1 cut(s) 904
Tth111I GACNNNGTC 1 cut(s) 401
Vha464I CTTAAG 1 cut(s) 1087
VpaK11BI GGWCC 1 cut(s) 197
XapI RAATTY 1 cut(s) 172
XceI RCATGY 2 cut(s) 1147, 1400
XhoI CTCGAG 3 cut(s) 315, 1100, 1410
XmiI GTMKAC 1 cut(s) 701
XspI CTAG 2 cut(s) 68, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.