FvH4_1g09900

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
Physical Location & Seq
Forward (+)
5385414 .. 5387262
1849 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g09900.t1

Sequence Viewer

Length: 1473 bp
ATGTGCTCCCCACTCTCCCTCAACTCTACCACAACTCAACAAAAATTAGCGACCCCGTTTTCTCTTGGAGCTTTTGTAAAAACACTAGCCATTTCAAGCATAATTGTAATATTGTCTTACATATTGTTCTTTGATCAATCAAATAGTTTTCAACCTTCCAATCTCCTGACAACCTTCAAACAAAGCTTCCCGGCTGTGACTGCACCTCCCGGCAGTCACCCTCCTACGAATTTAAGCCACATTGTGATCGGAATCGTTGGCTCCATGAACACATGGCAGCAGAAAAAAGCATACGTTGAGGCATGGTGGCGGCCTAATGTCACCCGTGGATACCTCTTCTTAGATAGAGCTCCTATCAAACAGTTTCTCCCTTGGCCTTCATCTTTTCCTCCTTTTCGAGTCAACGAGAACATCACCGGATTCAAAGTGTACCCGAAGATTGTGAGTCCGGTCCAAGTACGAATAGTGCGTACAATTTTGGAGATGTTTAGAGAGAGTGACAAGGATGTGAGATGGTACGTCATGGCAGACGATGATACCGTTCTTGTTGTTGATAATTTGGTTGAGGTTCTTGCAAAGTATGACCATACTAAATACCATTACATCGGAACAAGTTCGGAGTGTGTGAGGTCTAATTCTGATTTCTCTTTTGATATGGCATTCCGTGGTGCTGGCTACGCTTTGAGTTACCCACTCGTGGCAGCATTGGCGACAAAGTTAGATGAATGTATTGAGAGATATCCATACTTGGGGTTCAGTGATTTAATGCTACATGAATGTTTAACCGATTTAGGAGTTGCTCTGACGCAAGAAAAGGGCTTTCACCAGATCGATCTCCATGGTGACATATCAGGTCTTCTGTCAAGTCATCCACAGTCTCCATTCCTCTCCCTTCACCACCTTGACACTATTGATCCAATCTTCCCCTCCATGAACCGTTCGGAGTCCATTAACCACCTCATGAAAGCAGTAACAGTAGACCCTTCTCGTCTTCTTCAACAAACCATATGTTACCACAGACCAAGCAACTGGTCTGTCTCAATCTCATGGGGCTATTCTGCTCACATTTATGAAAATATAATCCCCAGGAGCAGTCTACAGAGGCCGATTGAGACATTCTGGCCTTGGCAGAGGAGCGCCAGAGTGCCATTTTACATGTTCAACACCAGGCGGCGCTCCAAGGATCCATGTCAGGCTCCGCATGTGTTTTATTTTGATTCTGTTGATCATCATGTTAAAGGAAACAAGAGTACTGTTACGACTTATGCCAGAGTAGCCCGGCGTGGTTTGGGGTCATGTTCTTCATCTGGTAACCACCCTGCGGATTCCATCACTGAGATTGAGGTCTATTCATCGCCAGAAATACGCCTGGAGATGGGAGGAAAGGAGTGCTGCGACATAGTACATGCAGCTGGAATGAACAATACTCGAGTCGTATACAGGGCTTGCATGGAGGGTGAAATTATGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

55.42

Weight (kDa)

7.64

Isoelectric Point (pI)

57.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 160 - 276 1.2e-12 Fringe-like
DUF604 PF04646 212 - 454 5.8e-98 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 978, 1096, 1437
AciI CCGC 4 cut(s) 310, 1171, 1199, 1322
AclWI GGATC 3 cut(s) 908, 1178, 1191
AcsI RAATTY 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 6 cut(s) 431, 459, 472, 518, 1252, 1404
AfiI CCNNNNNNNGG 4 cut(s) 697, 749, 1321, 1375
AflIII ACRYGT 1 cut(s) 1155
AgsI TTSAA 6 cut(s) 96, 152, 178, 424, 998, 1162
AjnI CCWGG 3 cut(s) 1085, 1166, 1368
AluBI AGCT 4 cut(s) 71, 186, 350, 1412
AluI AGCT 4 cut(s) 71, 186, 350, 1412
Alw21I GWGCWC 2 cut(s) 8, 352
Alw26I GTCTC 3 cut(s) 882, 1042, 1106
AlwI GGATC 3 cut(s) 908, 1178, 1191
Ama87I CYCGRG 1 cut(s) 1428
AoxI GGCC 4 cut(s) 311, 374, 1103, 1121
ApeKI GCWGC 4 cut(s) 277, 701, 1392, 1409
ApoI RAATTY 1 cut(s) 229
Asp700I GAANNNNTTC 1 cut(s) 613
AspLEI GCGC 2 cut(s) 1139, 1176
AspS9I GGNCC 1 cut(s) 451
AsuC2I CCSGG 3 cut(s) 191, 210, 1279
AsuHPI GGTGA 7 cut(s) 209, 313, 406, 815, 854, 887, 1469
AvaI CYCGRG 1 cut(s) 1428
AvaII GGWCC 1 cut(s) 451
BamHI GGATCC 1 cut(s) 1183
BanII GRGCYC 1 cut(s) 352
BauI CACGAG 1 cut(s) 695
BbsI GAAGAC 2 cut(s) 848, 983
Bbv12I GWGCWC 2 cut(s) 8, 352
BbvI GCAGC 4 cut(s) 289, 713, 1379, 1421
BccI CCATC 3 cut(s) 507, 1337, 1369
BciT130I CCWGG 3 cut(s) 1087, 1168, 1370
BciVI GTATCC 1 cut(s) 323
BclI TGATCA 2 cut(s) 133, 1225
BcnI CCSGG 3 cut(s) 191, 210, 1279
BcoDI GTCTC 3 cut(s) 882, 1042, 1106
BfaI CTAG 1 cut(s) 86
BfmI CTRYAG 1 cut(s) 1097
BfoI RGCGCY 2 cut(s) 1140, 1177
BfuI GTATCC 1 cut(s) 323
BisI GCNGC 6 cut(s) 278, 311, 702, 1172, 1393, 1410
BlsI GCNGC 6 cut(s) 279, 312, 703, 1173, 1394, 1411
BmcAI AGTACT 1 cut(s) 1252
Bme1390I CCNGG 6 cut(s) 191, 210, 1087, 1168, 1279, 1370
Bme18I GGWCC 1 cut(s) 451
BmeT110I CYCGRG 1 cut(s) 1428
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 3 cut(s) 262, 1185, 1197
BmrFI CCNGG 6 cut(s) 191, 210, 1087, 1168, 1279, 1370
BpiI GAAGAC 2 cut(s) 848, 983
BpmI CTGGAG 1 cut(s) 1391
BpuMI CCSGG 3 cut(s) 191, 210, 1279
Bsa29I ATCGAT 1 cut(s) 831
BsaBI GATNNNNATC 1 cut(s) 251
BsaJI CCNNGG 7 cut(s) 325, 371, 664, 838, 1085, 1124, 1179
BsaWI WCCGGW 2 cut(s) 416, 448
BsaXI ACNNNNNCTCC 6 cut(s) 60, 90, 190, 220, 351, 381
Bsc4I CCNNNNNNNGG 4 cut(s) 697, 749, 1321, 1375
Bse1I ACTGG 1 cut(s) 1034
Bse8I GATNNNNATC 1 cut(s) 251
BseBI CCWGG 3 cut(s) 1087, 1168, 1370
BseCI ATCGAT 1 cut(s) 831
BseDI CCNNGG 7 cut(s) 325, 371, 664, 838, 1085, 1124, 1179
BseGI GGATG 2 cut(s) 511, 868
BseJI GATNNNNATC 1 cut(s) 251
BseLI CCNNNNNNNGG 4 cut(s) 697, 749, 1321, 1375
BseMII CTCAG 1 cut(s) 1326
BseNI ACTGG 1 cut(s) 1034
BseRI GAGGAG 1 cut(s) 1147
BseXI GCAGC 4 cut(s) 289, 713, 1379, 1421
BsgI GTGCAG 1 cut(s) 186
BshFI GGCC 4 cut(s) 313, 376, 1105, 1123
BshVI ATCGAT 1 cut(s) 831
BsiHKAI GWGCWC 2 cut(s) 8, 352
BsiHKCI CYCGRG 1 cut(s) 1428
BsiSI CCGG 5 cut(s) 191, 210, 417, 449, 1279
BslI CCNNNNNNNGG 4 cut(s) 697, 749, 1321, 1375
BsmAI GTCTC 3 cut(s) 882, 1042, 1106
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 4 cut(s) 313, 376, 1105, 1123
BsoBI CYCGRG 1 cut(s) 1428
Bsp1286I GDGCHC 2 cut(s) 8, 352
Bsp143I GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
Bsp19I CCATGG 1 cut(s) 838
BspACI CCGC 4 cut(s) 310, 1171, 1199, 1322
BspANI GGCC 4 cut(s) 313, 376, 1105, 1123
BspCNI CTCAG 1 cut(s) 1327
BspDI ATCGAT 1 cut(s) 831
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 3 cut(s) 262, 1185, 1197
BspPI GGATC 3 cut(s) 908, 1178, 1191
BsrI ACTGG 1 cut(s) 1034
BssECI CCNNGG 7 cut(s) 325, 371, 664, 838, 1085, 1124, 1179
BssMI GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
BssNAI GTATAC 1 cut(s) 1438
BssSI CACGAG 1 cut(s) 695
BssT1I CCWWGG 4 cut(s) 371, 838, 1124, 1179
Bst1107I GTATAC 1 cut(s) 1438
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 3 cut(s) 1087, 1168, 1370
Bst4CI ACNGT 6 cut(s) 363, 541, 876, 938, 976, 1255
Bst6I CTCTTC 1 cut(s) 341
BstC8I GCNNGC 2 cut(s) 673, 1447
BstDEI CTNAG 3 cut(s) 340, 1335, 1470
BstDSI CCRYGG 3 cut(s) 325, 664, 838
BstEII GGTNACC 1 cut(s) 1310
BstF5I GGATG 2 cut(s) 511, 868
BstH2I RGCGCY 2 cut(s) 1140, 1177
BstHHI GCGC 2 cut(s) 1139, 1176
BstKTI GATC 7 cut(s) 136, 249, 831, 835, 916, 1186, 1228
BstMAI GTCTC 3 cut(s) 882, 1042, 1106
BstMBI GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
BstMWI GCNNNNNNNGC 4 cut(s) 200, 677, 707, 1274
BstNI CCWGG 3 cut(s) 1087, 1168, 1370
BstNSI RCATGY 3 cut(s) 1159, 1205, 1409
BstPI GGTNACC 1 cut(s) 1310
BstSCI CCNGG 6 cut(s) 189, 208, 1085, 1166, 1277, 1368
BstSFI CTRYAG 1 cut(s) 1097
BstV1I GCAGC 4 cut(s) 289, 713, 1379, 1421
BstV2I GAAGAC 2 cut(s) 848, 983
BstX2I RGATCY 1 cut(s) 1183
BstXI CCANNNNNNTGG 1 cut(s) 1029
BstYI RGATCY 1 cut(s) 1183
BstZ17I GTATAC 1 cut(s) 1438
Bsu15I ATCGAT 1 cut(s) 831
BsuI GTATCC 1 cut(s) 323
BsuRI GGCC 4 cut(s) 313, 376, 1105, 1123
BsuTUI ATCGAT 1 cut(s) 831
BtgI CCRYGG 3 cut(s) 325, 664, 838
BtgZI GCGATG 1 cut(s) 1338
BtsCI GGATG 2 cut(s) 511, 868
BtsIMutI CAGTG 2 cut(s) 763, 1332
Cac8I GCNNGC 2 cut(s) 673, 1447
CciI TCATGA 1 cut(s) 960
CfoI GCGC 2 cut(s) 1139, 1176
Cfr13I GGNCC 1 cut(s) 451
ClaI ATCGAT 1 cut(s) 831
CseI GACGC 1 cut(s) 814
Csp6I GTAC 6 cut(s) 430, 458, 471, 517, 1251, 1403
CviQI GTAC 6 cut(s) 430, 458, 471, 517, 1251, 1403
DdeI CTNAG 3 cut(s) 340, 1335, 1470
DpnI GATC 7 cut(s) 135, 248, 830, 834, 915, 1185, 1227
DpnII GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
DraIII CACNNNGTG 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Ecl136II GAGCTC 1 cut(s) 350
Eco130I CCWWGG 4 cut(s) 371, 838, 1124, 1179
Eco24I GRGCYC 1 cut(s) 352
Eco32I GATATC 1 cut(s) 740
Eco47I GGWCC 1 cut(s) 451
Eco53kI GAGCTC 1 cut(s) 350
Eco88I CYCGRG 1 cut(s) 1428
Eco91I GGTNACC 1 cut(s) 1310
EcoICRI GAGCTC 1 cut(s) 350
EcoO65I GGTNACC 1 cut(s) 1310
EcoRII CCWGG 3 cut(s) 1085, 1166, 1368
EcoRV GATATC 1 cut(s) 740
EcoT14I CCWWGG 4 cut(s) 371, 838, 1124, 1179
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 4 cut(s) 371, 838, 1124, 1179
FauNDI CATATG 1 cut(s) 1007
FbaI TGATCA 2 cut(s) 133, 1225
FblI GTMKAC 3 cut(s) 978, 1096, 1437
Fnu4HI GCNGC 6 cut(s) 278, 311, 702, 1172, 1393, 1410
FokI GGATG 2 cut(s) 518, 855
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 6 cut(s) 278, 311, 702, 1172, 1393, 1410
FspBI CTAG 1 cut(s) 86
GlaI GCGC 2 cut(s) 1138, 1175
GluI GCNGC 6 cut(s) 278, 311, 702, 1172, 1393, 1410
GsuI CTGGAG 1 cut(s) 1391
HaeII RGCGCY 2 cut(s) 1140, 1177
HaeIII GGCC 4 cut(s) 313, 376, 1105, 1123
HapII CCGG 5 cut(s) 191, 210, 417, 449, 1279
HgaI GACGC 1 cut(s) 814
HhaI GCGC 2 cut(s) 1139, 1176
Hin6I GCGC 2 cut(s) 1137, 1174
HinP1I GCGC 2 cut(s) 1137, 1174
HincII GTYRAC 1 cut(s) 403
HindII GTYRAC 1 cut(s) 403
HindIII AAGCTT 1 cut(s) 184
HinfI GANTC 8 cut(s) 252, 399, 420, 445, 944, 1217, 1325, 1431
HpaII CCGG 5 cut(s) 191, 210, 417, 449, 1279
HphI GGTGA 7 cut(s) 209, 313, 406, 815, 854, 887, 1469
Hpy166II GTNNAC 5 cut(s) 403, 430, 979, 1097, 1438
Hpy188I TCNGA 6 cut(s) 251, 608, 619, 640, 804, 943
Hpy188III TCNNGA 2 cut(s) 166, 961
Hpy8I GTNNAC 5 cut(s) 403, 430, 979, 1097, 1438
HpyAV CCTTC 5 cut(s) 165, 184, 387, 902, 993
HpyCH4III ACNGT 6 cut(s) 363, 541, 876, 938, 976, 1255
HpyCH4IV ACGT 2 cut(s) 294, 519
HpyCH4V TGCA 4 cut(s) 203, 575, 1409, 1449
HpyF10VI GCNNNNNNNGC 4 cut(s) 200, 677, 707, 1274
HpyF3I CTNAG 3 cut(s) 340, 1335, 1470
HpySE526I ACGT 2 cut(s) 294, 519
HspAI GCGC 2 cut(s) 1137, 1174
Ksp22I TGATCA 2 cut(s) 133, 1225
Kzo9I GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
LmnI GCTCC 8 cut(s) 11, 68, 266, 355, 1089, 1134, 1181, 1201
Lsp1109I GCAGC 4 cut(s) 289, 713, 1379, 1421
MaeI CTAG 1 cut(s) 86
MaeII ACGT 2 cut(s) 294, 519
MalI GATC 7 cut(s) 135, 248, 830, 834, 915, 1185, 1227
MboI GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
MboII GAAGA 7 cut(s) 328, 448, 848, 913, 983, 986, 1293
MflI RGATCY 1 cut(s) 1183
MhlI GDGCHC 2 cut(s) 8, 352
MluCI AATT 7 cut(s) 44, 102, 229, 474, 556, 634, 1461
MlyI GAGTC 4 cut(s) 408, 454, 953, 1440
MroXI GAANNNNTTC 1 cut(s) 613
MseI TTAA 5 cut(s) 233, 764, 782, 951, 1236
MslI CAYNNNNRTG 1 cut(s) 1068
MspA1I CMGCKG 1 cut(s) 1412
MspI CCGG 5 cut(s) 191, 210, 417, 449, 1279
MspR9I CCNGG 6 cut(s) 191, 210, 1087, 1168, 1279, 1370
Mva1269I GAATGC 1 cut(s) 659
MvaI CCWGG 3 cut(s) 1087, 1168, 1370
MwoI GCNNNNNNNGC 4 cut(s) 200, 677, 707, 1274
NciI CCSGG 3 cut(s) 191, 210, 1279
NcoI CCATGG 1 cut(s) 838
NdeI CATATG 1 cut(s) 1007
NdeII GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
NlaIV GGNNCC 3 cut(s) 262, 1185, 1197
NmuCI GTSAC 5 cut(s) 196, 215, 319, 497, 842
NspI RCATGY 3 cut(s) 1159, 1205, 1409
PaeR7I CTCGAG 1 cut(s) 1428
PagI TCATGA 1 cut(s) 960
PciI ACATGT 1 cut(s) 1155
PcsI WCGNNNNNNNCGW 2 cut(s) 466, 537
PctI GAATGC 1 cut(s) 659
PdmI GAANNNNTTC 1 cut(s) 613
PfeI GAWTC 4 cut(s) 252, 420, 1217, 1325
PkrI GCNGC 6 cut(s) 279, 312, 703, 1173, 1394, 1411
PleI GAGTC 4 cut(s) 407, 453, 952, 1439
PpsI GAGTC 4 cut(s) 407, 453, 952, 1439
PscI ACATGT 1 cut(s) 1155
Psp124BI GAGCTC 1 cut(s) 352
Psp6I CCWGG 3 cut(s) 1085, 1166, 1368
PspEI GGTNACC 1 cut(s) 1310
PspGI CCWGG 3 cut(s) 1085, 1166, 1368
PspN4I GGNNCC 3 cut(s) 262, 1185, 1197
PspPI GGNCC 1 cut(s) 451
PspXI VCTCGAGB 1 cut(s) 1428
PsuI RGATCY 1 cut(s) 1183
PvuII CAGCTG 1 cut(s) 1412
RsaI GTAC 6 cut(s) 431, 459, 472, 518, 1252, 1404
RsaNI GTAC 6 cut(s) 430, 458, 471, 517, 1251, 1403
RseI CAYNNNNRTG 1 cut(s) 1068
SacI GAGCTC 1 cut(s) 352
SaqAI TTAA 5 cut(s) 233, 764, 782, 951, 1236
SatI GCNGC 6 cut(s) 278, 311, 702, 1172, 1393, 1410
Sau3AI GATC 7 cut(s) 133, 246, 828, 832, 913, 1183, 1225
Sau96I GGNCC 1 cut(s) 451
ScaI AGTACT 1 cut(s) 1252
SchI GAGTC 4 cut(s) 408, 454, 953, 1440
ScrFI CCNGG 6 cut(s) 191, 210, 1087, 1168, 1279, 1370
SduI GDGCHC 2 cut(s) 8, 352
SfcI CTRYAG 1 cut(s) 1097
Sfr274I CTCGAG 1 cut(s) 1428
SinI GGWCC 1 cut(s) 451
SlaI CTCGAG 1 cut(s) 1428
SmiMI CAYNNNNRTG 1 cut(s) 1068
SmlI CTYRAG 1 cut(s) 1428
SmoI CTYRAG 1 cut(s) 1428
Sse9I AATT 7 cut(s) 44, 102, 229, 474, 556, 634, 1461
SsiI CCGC 4 cut(s) 310, 1171, 1199, 1322
SspI AATATT 1 cut(s) 111
SspMI CTAG 1 cut(s) 86
SstI GAGCTC 1 cut(s) 352
StyD4I CCNGG 6 cut(s) 189, 208, 1085, 1166, 1277, 1368
StyI CCWWGG 4 cut(s) 371, 838, 1124, 1179
TaaI ACNGT 6 cut(s) 363, 541, 876, 938, 976, 1255
TaiI ACGT 2 cut(s) 297, 522
TaqI TCGA 3 cut(s) 397, 831, 1429
TasI AATT 7 cut(s) 44, 102, 229, 474, 556, 634, 1461
TatI WGTACW 2 cut(s) 1250, 1402
TauI GCSGC 2 cut(s) 313, 1174
TfiI GAWTC 4 cut(s) 252, 420, 1217, 1325
Tru1I TTAA 5 cut(s) 233, 764, 782, 951, 1236
Tru9I TTAA 5 cut(s) 233, 764, 782, 951, 1236
TscAI CASTG 2 cut(s) 763, 1339
TseFI GTSAC 5 cut(s) 196, 215, 319, 497, 842
TseI GCWGC 4 cut(s) 277, 701, 1392, 1409
Tsp45I GTSAC 5 cut(s) 196, 215, 319, 497, 842
TspGWI ACGGA 1 cut(s) 653
TspRI CASTG 2 cut(s) 763, 1339
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 229
XceI RCATGY 3 cut(s) 1159, 1205, 1409
XhoI CTCGAG 1 cut(s) 1428
XmiI GTMKAC 3 cut(s) 978, 1096, 1437
XmnI GAANNNNTTC 1 cut(s) 613
XspI CTAG 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 1252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.