Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004335.1

Orthogroup ID

OG0005378

Physical Location & Seq

Genomic Coordinates Reverse (-)

2816 .. 3358

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004335.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

atgaaccgctctgactccattaaccacctcatgaaagctgcaaaagttgatccttctcgtcttcttcaacaaaccatatgctaccacagaccaagcaattggtctttctcaatctcatggggttattctgctcacatttatgaaagcataatcccccggagcactttaaggaggcccattgagacattctcgcgttggaggaacgcaagccgaccattctacatgttcaacaccaggttgccctccaaggatccatgtcgagctccccatgtgttttattttgattctattgatcatcgtgtcgatggaaggaagactaagactgttacaacttattcaagagtagctccgcgtggtttggtgtcatgttcttcaagtggtaaccactctgcggattccatcaccaaaattgaggtctatacatcgccagaattccgtttggagatgaaaggaaaggactgctgtgacatagtacatgcagccgatattcacactactcgagtcacatacaggtcttgcatggagggtgaaattatcgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

180

Amino Acids

20.73

Weight (kDa)

9.45

Isoelectric Point (pI)

62.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12460
fragaria_vesca	FvH4_1g09900 FvH4_3g28523 FvH4_3g28524
malus_domestica	MD03G1172600.v1.1
prunus_persica	Prupe.4G254000_v2.0.a1 Prupe.4G260000_v2.0.a1
pyrus_communis	pycom03g12980
rosa_chinensis	RchiOBHm_Chr5g0052781 RchiOBHm_Chr5g0052791
rosa_laevigata	RLG00000034797 RLG00000034799
rosa_multiflora	Rmu_sc0004335.1_g000002 Rmu_sc0004335.1_g000005 Rmu_sc0010119.1_g000002 Rmu_sc0017126.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028590 Rroxscaffold_1G00028610
rosa_rugosa	Rorug05G0269900
rosa_samantha	Rh5AG341800 Rh5AG341900 Rh5BG352400 Rh5BG352500 Rh5CG379100 Rh5CG379200 Rh5DG368800 Rh5DG368900
rosa_wichuraiana	Rw5G032220 Rw5G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	9
AccII	CGCG	2 cut(s)	193, 352
AciI	CCGC	3 cut(s)	7, 350, 392
AclWI	GGATC	3 cut(s)	44, 245, 258
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	1 cut(s)	474
AfiI	CCNNNNNNNGG	1 cut(s)	391
AflIII	ACRYGT	1 cut(s)	222
AgsI	TTSAA	4 cut(s)	68, 229, 339, 375
AjnI	CCWGG	1 cut(s)	233
AluBI	AGCT	3 cut(s)	38, 263, 347
AluI	AGCT	3 cut(s)	38, 263, 347
Alw21I	GWGCWC	2 cut(s)	164, 265
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	3 cut(s)	44, 245, 258
Ama87I	CYCGRG	1 cut(s)	498
AoxI	GGCC	1 cut(s)	173
ApeKI	GCWGC	2 cut(s)	38, 479
ApoI	RAATTY	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	399, 431
AspS9I	GGNCC	1 cut(s)	174
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	2 cut(s)	394, 539
AvaI	CYCGRG	1 cut(s)	498
BamHI	GGATCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	265
BbsI	GAAGAC	2 cut(s)	53, 320
Bbv12I	GWGCWC	2 cut(s)	164, 265
BbvI	GCAGC	2 cut(s)	25, 491
BccI	CCATC	2 cut(s)	299, 407
BciT130I	CCWGG	1 cut(s)	235
BclI	TGATCA	1 cut(s)	292
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	176
BisI	GCNGC	2 cut(s)	39, 480
BlsI	GCNGC	2 cut(s)	40, 481
Bme1390I	CCNGG	2 cut(s)	157, 235
BmeT110I	CYCGRG	1 cut(s)	498
BmgT120I	GGNCC	1 cut(s)	174
BmiI	GGNNCC	1 cut(s)	252
BmrFI	CCNGG	2 cut(s)	157, 235
BpiI	GAAGAC	2 cut(s)	53, 320
BplI	GAGNNNNNCTC	2 cut(s)	173, 205
BpuMI	CCSGG	1 cut(s)	157
BsaJI	CCNNGG	2 cut(s)	155, 246
Bsc4I	CCNNNNNNNGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	235
BseDI	CCNNGG	2 cut(s)	155, 246
BseLI	CCNNNNNNNGG	1 cut(s)	391
BseXI	GCAGC	2 cut(s)	25, 491
Bsh1236I	CGCG	2 cut(s)	193, 352
BshFI	GGCC	1 cut(s)	175
BsiHKAI	GWGCWC	2 cut(s)	164, 265
BsiHKCI	CYCGRG	1 cut(s)	498
BsiSI	CCGG	1 cut(s)	157
BslI	CCNNNNNNNGG	1 cut(s)	391
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	175
BsoBI	CYCGRG	1 cut(s)	498
Bsp1286I	GDGCHC	2 cut(s)	164, 265
Bsp143I	GATC	3 cut(s)	49, 250, 292
BspACI	CCGC	3 cut(s)	7, 350, 392
BspANI	GGCC	1 cut(s)	175
BspFNI	CGCG	2 cut(s)	193, 352
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	252
BspPI	GGATC	3 cut(s)	44, 245, 258
BsrBI	CCGCTC	1 cut(s)	9
BssECI	CCNNGG	2 cut(s)	155, 246
BssMI	GATC	3 cut(s)	49, 250, 292
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	235
Bst4CI	ACNGT	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	208
BstDEI	CTNAG	1 cut(s)	318
BstEII	GGTNACC	1 cut(s)	380
BstFNI	CGCG	2 cut(s)	193, 352
BstKTI	GATC	3 cut(s)	52, 253, 295
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	49, 250, 292
BstNI	CCWGG	1 cut(s)	235
BstNSI	RCATGY	2 cut(s)	226, 479
BstPI	GGTNACC	1 cut(s)	380
BstSCI	CCNGG	2 cut(s)	155, 233
BstUI	CGCG	2 cut(s)	193, 352
BstV1I	GCAGC	2 cut(s)	25, 491
BstV2I	GAAGAC	2 cut(s)	53, 320
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	99
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	175
BtgZI	GCGATG	1 cut(s)	408
Cac8I	GCNNGC	1 cut(s)	208
CciI	TCATGA	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	174
CsiI	ACCWGGT	1 cut(s)	233
Csp6I	GTAC	1 cut(s)	473
CviAII	CATG	8 cut(s)	31, 117, 223, 255, 269, 366, 476, 520
CviJI	RGCY	6 cut(s)	38, 175, 210, 263, 347, 482
CviKI_1	RGCY	6 cut(s)	38, 175, 210, 263, 347, 482
CviQI	GTAC	1 cut(s)	473
DdeI	CTNAG	1 cut(s)	318
DpnI	GATC	3 cut(s)	51, 252, 294
DpnII	GATC	3 cut(s)	49, 250, 292
Ecl136II	GAGCTC	1 cut(s)	263
Eco130I	CCWWGG	1 cut(s)	246
Eco24I	GRGCYC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	498
Eco91I	GGTNACC	1 cut(s)	380
EcoICRI	GAGCTC	1 cut(s)	263
EcoO65I	GGTNACC	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	233
EcoT14I	CCWWGG	1 cut(s)	246
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	8 cut(s)	34, 120, 226, 258, 272, 369, 479, 523
FatI	CATG	8 cut(s)	30, 116, 222, 254, 268, 365, 475, 519
FauNDI	CATATG	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	39, 480
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	39, 480
GluI	GCNGC	2 cut(s)	39, 480
HaeIII	GGCC	1 cut(s)	175
HapII	CCGG	1 cut(s)	157
Hin1II	CATG	8 cut(s)	34, 120, 226, 258, 272, 369, 479, 523
HinfI	GANTC	4 cut(s)	14, 284, 395, 501
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	2 cut(s)	394, 539
Hpy188I	TCNGA	1 cut(s)	13
Hpy188III	TCNNGA	2 cut(s)	31, 339
HpyAV	CCTTC	2 cut(s)	63, 303
HpyCH4III	ACNGT	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	41, 479, 519
HpyF3I	CTNAG	1 cut(s)	318
Hsp92II	CATG	8 cut(s)	34, 120, 226, 258, 272, 369, 479, 523
Ksp22I	TGATCA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	49, 250, 292
LmnI	GCTCC	3 cut(s)	159, 268, 352
LpnPI	CCDG	5 cut(s)	170, 220, 247, 441, 496
Lsp1109I	GCAGC	2 cut(s)	25, 491
MabI	ACCWGGT	1 cut(s)	233
MaeIII	GTNAC	4 cut(s)	325, 380, 464, 502
MalI	GATC	3 cut(s)	51, 252, 294
MbiI	CCGCTC	1 cut(s)	9
MboI	GATC	3 cut(s)	49, 250, 292
MboII	GAAGA	4 cut(s)	53, 56, 325, 363
MfeI	CAATTG	1 cut(s)	97
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	2 cut(s)	164, 265
MluCI	AATT	4 cut(s)	97, 408, 431, 531
MlyI	GAGTC	2 cut(s)	8, 510
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	6 cut(s)	38, 165, 192, 253, 406, 517
MseI	TTAA	2 cut(s)	21, 167
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	157, 235
MunI	CAATTG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	235
MvnI	CGCG	2 cut(s)	193, 352
NciI	CCSGG	1 cut(s)	157
NdeI	CATATG	1 cut(s)	77
NdeII	GATC	3 cut(s)	49, 250, 292
NlaIII	CATG	8 cut(s)	34, 120, 226, 258, 272, 369, 479, 523
NlaIV	GGNNCC	1 cut(s)	252
NmuCI	GTSAC	2 cut(s)	464, 502
NspI	RCATGY	2 cut(s)	226, 479
PaeR7I	CTCGAG	1 cut(s)	498
PagI	TCATGA	1 cut(s)	30
PciI	ACATGT	1 cut(s)	222
PfeI	GAWTC	2 cut(s)	284, 395
PkrI	GCNGC	2 cut(s)	40, 481
PleI	GAGTC	2 cut(s)	8, 509
PpsI	GAGTC	2 cut(s)	8, 509
PscI	ACATGT	1 cut(s)	222
Psp124BI	GAGCTC	1 cut(s)	265
Psp6I	CCWGG	1 cut(s)	233
PspEI	GGTNACC	1 cut(s)	380
PspGI	CCWGG	1 cut(s)	233
PspN4I	GGNNCC	1 cut(s)	252
PspPI	GGNCC	1 cut(s)	174
PspXI	VCTCGAGB	1 cut(s)	498
PsuI	RGATCY	1 cut(s)	250
RsaI	GTAC	1 cut(s)	474
RsaNI	GTAC	1 cut(s)	473
RseI	CAYNNNNRTG	1 cut(s)	138
SacI	GAGCTC	1 cut(s)	265
SaqAI	TTAA	2 cut(s)	21, 167
SatI	GCNGC	2 cut(s)	39, 480
Sau3AI	GATC	3 cut(s)	49, 250, 292
Sau96I	GGNCC	1 cut(s)	174
SchI	GAGTC	2 cut(s)	8, 510
ScrFI	CCNGG	2 cut(s)	157, 235
SduI	GDGCHC	2 cut(s)	164, 265
SetI	ASST	7 cut(s)	30, 40, 239, 265, 349, 417, 515
SexAI	ACCWGGT	1 cut(s)	233
Sfr274I	CTCGAG	1 cut(s)	498
SlaI	CTCGAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	498
SmoI	CTYRAG	1 cut(s)	498
Sse9I	AATT	4 cut(s)	97, 408, 431, 531
SsiI	CCGC	3 cut(s)	7, 350, 392
SstI	GAGCTC	1 cut(s)	265
StyD4I	CCNGG	2 cut(s)	155, 233
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	1 cut(s)	325
TaqI	TCGA	3 cut(s)	259, 303, 499
TasI	AATT	4 cut(s)	97, 408, 431, 531
TatI	WGTACW	1 cut(s)	472
TfiI	GAWTC	2 cut(s)	284, 395
Tru1I	TTAA	2 cut(s)	21, 167
Tru9I	TTAA	2 cut(s)	21, 167
TseFI	GTSAC	2 cut(s)	464, 502
TseI	GCWGC	2 cut(s)	38, 479
Tsp45I	GTSAC	2 cut(s)	464, 502
TspDTI	ATGAA	4 cut(s)	17, 47, 156, 461
TspGWI	ACGGA	1 cut(s)	425
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	2 cut(s)	226, 479
XhoI	CTCGAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.