FvH4_3g28523

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Forward (+)
21541729 .. 21543634
1906 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28523.t1

Sequence Viewer

Length: 1473 bp
ATGTCTTCCCCGCTCTCTGTCAACTCTACCACAACTCAACAAAAACGAGCAAACCCTTTATCGTCTGGAGATTTATTCAAATTTCTAGCAATTTCAAGCTTAATCCTAACATCTTTGTACATCTTGTTCTATGAAAAAACAAATAACTATCAACCTTCGGATCTCTTGTTCCAACCAAACTTCCCAGCCGCGGCTTCAAGTCCCTCCAATGAATCCGATCACCTTCCTACCAATTTAAGCCACATTGTGATCGGAATGCTTGGCTGTGTCAACACATTGAAGCACAAAACAGCATACATTGAAGCATGGTGGCGGCCTAATGTCACTAAAGGATACCTCTTTCTCGATAGAGCTCCTACTCCCGAGTTTTTGCCTTGGCCTTCATCGTATCCCCCTTTCCGAGTCAATGAGGACGTCACTAAATTAAAAGTGTACCCGAAAATTCGGAATCCGGTCCAAGTGCGAATAGTTCGTTCGATTTTGGAGATATTTAGAGAGGGTGACAATGATGTAAGATGGTATGTAATGTCGGATGATGACACCGTTTTCATGGTTGATAATTTGGTAAAAGTTCTAGCCAAGTATGACCATACTAAGTACCATTACATTGGTACAAGTTCGGAAAGTGTCAAGTCGAATTTTGATTTTTCGTTTGATATGGCTTTTGGTGGTGCTGGTTATATTTTGAGTTACCCTCTGGTGGCAGTTCTATCAACAAAGCTGGATGAATGTATTGATAGATATTCATACTCCTGGACTAGCGATTTTACATTACATGAATGTTTATCCGATTTGGGAGTTGCTCTAACTCAGGAAAAGGGACTTCACCAGATTGATCTCCATGGTGACATATCAGGTCTTTTATCGTCTCATCCTCAAACTCCATTCCTCTCCCTCCACCACATCGATGAAGTTGAACCAATCTTCCCATCCATGAACCGCTCTGAGTCCATTAACCATCTCATGAAAGCTGCAAAAGTTGATCATTCTCGTCTTCTTCAACAAACAGTATGCTACCACAGACCAAGCAATTGGTCTTTCTCAATCTCATGGGGCTATTCTGCTCACATTTACGAAAACATAATCCCTCGAAGCACTCTCCGGAGGCCAATCGAGACATTCTGGCCTTGGAAGAGGAACGCAAGACAACCATTTTACATGTTCAACACCAGATGGCCCTTCAATGATCCATGTCAAGCTCCCCATGTGTTTTATCTTGATACTGTTGATCAGAGTGTTGAAGGAAGCAAGACTGTTACCACTTATTCAAGGGTAGCGCCGCGTGGTTTGCCGCCATGTTCTTCAAGTGGTAATCACTCTGCGGATTCCATCACCAATATTGAGGTCTATTCGACTCTAGAAATCAGCTTGGAGGTGAGAGGAATGGACTGTTGCGACATAGTACCTGCAGAAGATATGAACACTACTCGAGTAATGTATAGGTCTTGCATGGATAGTGAATTCGTCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

491

Amino Acids

55.88

Weight (kDa)

6.01

Isoelectric Point (pI)

54.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 169 - 277 1.7e-13 Fringe-like
DUF604 PF04646 213 - 453 1.2e-96 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 417
Acc36I ACCTGC 1 cut(s) 1414
AccBSI CCGCTC 2 cut(s) 13, 942
AccII CGCG 2 cut(s) 191, 1282
AccIII TCCGGA 1 cut(s) 1101
AciI CCGC 8 cut(s) 11, 189, 191, 313, 940, 1280, 1292, 1322
AclWI GGATC 2 cut(s) 168, 1181
AcsI RAATTY 4 cut(s) 80, 441, 637, 1460
AcyI GRCGYC 1 cut(s) 414
AdeI CACNNNGTG 1 cut(s) 247
AfaI GTAC 5 cut(s) 119, 434, 599, 613, 1404
AfiI CCNNNNNNNGG 2 cut(s) 190, 700
AflIII ACRYGT 1 cut(s) 1158
AjnI CCWGG 1 cut(s) 752
AloI GAACNNNNNNTCC 4 cut(s) 152, 184, 909, 941
AluBI AGCT 6 cut(s) 99, 353, 721, 971, 1199, 1368
AluI AGCT 6 cut(s) 99, 353, 721, 971, 1199, 1368
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 2 cut(s) 873, 1109
AlwI GGATC 2 cut(s) 168, 1181
Ama87I CYCGRG 2 cut(s) 362, 1428
Aor13HI TCCGGA 1 cut(s) 1101
AoxI GGCC 5 cut(s) 314, 377, 1106, 1124, 1175
ApeKI GCWGC 1 cut(s) 971
ApoI RAATTY 4 cut(s) 80, 441, 637, 1460
AspLEI GCGC 1 cut(s) 1279
AspS9I GGNCC 2 cut(s) 454, 1176
AsuHPI GGTGA 6 cut(s) 212, 512, 818, 857, 1324, 1387
AvaI CYCGRG 2 cut(s) 362, 1428
AvaII GGWCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 355
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 1 cut(s) 355
BbvI GCAGC 1 cut(s) 958
BccI CCATC 5 cut(s) 510, 937, 966, 1167, 1337
BciT130I CCWGG 1 cut(s) 754
BciVI GTATCC 2 cut(s) 326, 399
BclI TGATCA 2 cut(s) 982, 1228
BcoDI GTCTC 2 cut(s) 873, 1109
BfaI CTAG 4 cut(s) 86, 575, 759, 1358
BfmI CTRYAG 1 cut(s) 1407
BfoI RGCGCY 1 cut(s) 1280
BfuAI ACCTGC 1 cut(s) 1414
BfuI GTATCC 2 cut(s) 326, 399
BisI GCNGC 6 cut(s) 189, 192, 314, 972, 1280, 1292
BlsI GCNGC 6 cut(s) 190, 193, 315, 973, 1281, 1293
Bme1390I CCNGG 1 cut(s) 754
Bme18I GGWCC 1 cut(s) 454
BmeT110I CYCGRG 2 cut(s) 362, 1428
BmgT120I GGNCC 2 cut(s) 454, 1176
BmrFI CCNGG 1 cut(s) 754
BpiI GAAGAC 1 cut(s) 986
BplI GAGNNNNNCTC 2 cut(s) 679, 711
BpmI CTGGAG 1 cut(s) 87
Bsa29I ATCGAT 1 cut(s) 906
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 4 cut(s) 189, 374, 841, 1127
BsaWI WCCGGW 2 cut(s) 451, 1101
Bsc4I CCNNNNNNNGG 2 cut(s) 190, 700
BseAI TCCGGA 1 cut(s) 1101
BseBI CCWGG 1 cut(s) 754
BseCI ATCGAT 1 cut(s) 906
BseDI CCNNGG 4 cut(s) 189, 374, 841, 1127
BseGI GGATG 4 cut(s) 538, 730, 871, 929
BseLI CCNNNNNNNGG 2 cut(s) 190, 700
BseMII CTCAG 2 cut(s) 824, 936
BseXI GCAGC 1 cut(s) 958
BseYI CCCAGC 1 cut(s) 184
Bsh1236I CGCG 2 cut(s) 191, 1282
BshFI GGCC 5 cut(s) 316, 379, 1108, 1126, 1177
BshVI ATCGAT 1 cut(s) 906
BsiHKAI GWGCWC 1 cut(s) 355
BsiHKCI CYCGRG 2 cut(s) 362, 1428
BsiSI CCGG 2 cut(s) 452, 1102
BslFI GGGAC 2 cut(s) 186, 834
BslI CCNNNNNNNGG 2 cut(s) 190, 700
BsmAI GTCTC 2 cut(s) 873, 1109
BsmBI CGTCTC 1 cut(s) 873
BsmFI GGGAC 2 cut(s) 186, 834
BsmI GAATGC 1 cut(s) 261
BsnI GGCC 5 cut(s) 316, 379, 1108, 1126, 1177
BsoBI CYCGRG 2 cut(s) 362, 1428
Bsp1286I GDGCHC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 1101
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
Bsp19I CCATGG 1 cut(s) 841
BspACI CCGC 8 cut(s) 11, 189, 191, 313, 940, 1280, 1292, 1322
BspANI GGCC 5 cut(s) 316, 379, 1108, 1126, 1177
BspCNI CTCAG 2 cut(s) 823, 937
BspDI ATCGAT 1 cut(s) 906
BspEI TCCGGA 1 cut(s) 1101
BspFNI CGCG 2 cut(s) 191, 1282
BspHI TCATGA 1 cut(s) 963
BspMAI CTGCAG 1 cut(s) 1411
BspMI ACCTGC 1 cut(s) 1414
BspPI GGATC 2 cut(s) 168, 1181
BsrBI CCGCTC 2 cut(s) 13, 942
BsrGI TGTACA 1 cut(s) 117
BssECI CCNNGG 4 cut(s) 189, 374, 841, 1127
BssMI GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 3 cut(s) 374, 841, 1127
Bst2UI CCWGG 1 cut(s) 754
Bst4CI ACNGT 5 cut(s) 544, 1009, 1225, 1255, 1391
Bst6I CTCTTC 1 cut(s) 1127
BstACI GRCGYC 1 cut(s) 414
BstAUI TGTACA 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 594, 810, 945
BstDSI CCRYGG 2 cut(s) 189, 841
BstF5I GGATG 4 cut(s) 538, 730, 871, 929
BstFNI CGCG 2 cut(s) 191, 1282
BstH2I RGCGCY 1 cut(s) 1280
BstHHI GCGC 1 cut(s) 1279
BstKTI GATC 7 cut(s) 163, 220, 252, 838, 985, 1189, 1231
BstMAI GTCTC 2 cut(s) 873, 1109
BstMBI GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
BstMWI GCNNNNNNNGC 1 cut(s) 1288
BstNI CCWGG 1 cut(s) 754
BstNSI RCATGY 1 cut(s) 1162
BstSCI CCNGG 1 cut(s) 752
BstSFI CTRYAG 1 cut(s) 1407
BstUI CGCG 2 cut(s) 191, 1282
BstV1I GCAGC 1 cut(s) 958
BstV2I GAAGAC 1 cut(s) 986
BstX2I RGATCY 1 cut(s) 160
BstXI CCANNNNNNTGG 2 cut(s) 608, 1032
BstYI RGATCY 1 cut(s) 160
Bsu15I ATCGAT 1 cut(s) 906
BsuI GTATCC 2 cut(s) 326, 399
BsuRI GGCC 5 cut(s) 316, 379, 1108, 1126, 1177
BsuTUI ATCGAT 1 cut(s) 906
BtgI CCRYGG 2 cut(s) 189, 841
BtsCI GGATG 4 cut(s) 538, 730, 871, 929
BveI ACCTGC 1 cut(s) 1414
CciI TCATGA 1 cut(s) 963
CfoI GCGC 1 cut(s) 1279
Cfr13I GGNCC 2 cut(s) 454, 1176
Cfr42I CCGCGG 1 cut(s) 192
ClaI ATCGAT 1 cut(s) 906
Csp6I GTAC 5 cut(s) 118, 433, 598, 612, 1403
CviQI GTAC 5 cut(s) 118, 433, 598, 612, 1403
DdeI CTNAG 3 cut(s) 594, 810, 945
DpnI GATC 7 cut(s) 162, 219, 251, 837, 984, 1188, 1230
DpnII GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
DraIII CACNNNGTG 1 cut(s) 247
Eam1104I CTCTTC 1 cut(s) 1127
EarI CTCTTC 1 cut(s) 1127
Ecl136II GAGCTC 1 cut(s) 353
Eco130I CCWWGG 3 cut(s) 374, 841, 1127
Eco24I GRGCYC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 353
Eco88I CYCGRG 2 cut(s) 362, 1428
EcoICRI GAGCTC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 1460
EcoRII CCWGG 1 cut(s) 752
EcoT14I CCWWGG 3 cut(s) 374, 841, 1127
EcoT38I GRGCYC 1 cut(s) 355
ErhI CCWWGG 3 cut(s) 374, 841, 1127
Esp3I CGTCTC 1 cut(s) 873
FaqI GGGAC 2 cut(s) 186, 834
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 2 cut(s) 982, 1228
Fnu4HI GCNGC 6 cut(s) 189, 192, 314, 972, 1280, 1292
FokI GGATG 4 cut(s) 545, 737, 858, 916
FriOI GRGCYC 1 cut(s) 355
Fsp4HI GCNGC 6 cut(s) 189, 192, 314, 972, 1280, 1292
FspBI CTAG 4 cut(s) 86, 575, 759, 1358
GlaI GCGC 1 cut(s) 1278
GluI GCNGC 6 cut(s) 189, 192, 314, 972, 1280, 1292
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 1280
HaeIII GGCC 5 cut(s) 316, 379, 1108, 1126, 1177
HapII CCGG 2 cut(s) 452, 1102
HhaI GCGC 1 cut(s) 1279
Hin1I GRCGYC 1 cut(s) 414
Hin6I GCGC 1 cut(s) 1277
HinP1I GCGC 1 cut(s) 1277
HincII GTYRAC 2 cut(s) 22, 271
HindII GTYRAC 2 cut(s) 22, 271
HindIII AAGCTT 1 cut(s) 97
HinfI GANTC 6 cut(s) 212, 402, 448, 947, 1325, 1354
HpaII CCGG 2 cut(s) 452, 1102
HphI GGTGA 6 cut(s) 212, 512, 818, 857, 1324, 1387
Hpy166II GTNNAC 3 cut(s) 22, 271, 433
Hpy188III TCNNGA 9 cut(s) 66, 344, 362, 812, 964, 1102, 1114, 1217, 1358
Hpy8I GTNNAC 3 cut(s) 22, 271, 433
Hpy99I CGWCG 1 cut(s) 1469
HpyAV CCTTC 5 cut(s) 165, 233, 390, 1189, 1235
HpyCH4III ACNGT 5 cut(s) 544, 1009, 1225, 1255, 1391
HpyCH4IV ACGT 1 cut(s) 414
HpyCH4V TGCA 3 cut(s) 974, 1409, 1449
HpyF10VI GCNNNNNNNGC 1 cut(s) 1288
HpyF3I CTNAG 3 cut(s) 594, 810, 945
HpySE526I ACGT 1 cut(s) 414
Hsp92I GRCGYC 1 cut(s) 414
HspAI GCGC 1 cut(s) 1277
Kpn2I TCCGGA 1 cut(s) 1101
Ksp22I TGATCA 2 cut(s) 982, 1228
KspI CCGCGG 1 cut(s) 192
Kzo9I GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
LmnI GCTCC 2 cut(s) 358, 1204
Lsp1109I GCAGC 1 cut(s) 958
MaeI CTAG 4 cut(s) 86, 575, 759, 1358
MaeII ACGT 1 cut(s) 414
MaeIII GTNAC 6 cut(s) 322, 415, 500, 689, 845, 1255
MalI GATC 7 cut(s) 162, 219, 251, 837, 984, 1188, 1230
MbiI CCGCTC 2 cut(s) 13, 942
MboI GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
MboII GAAGA 6 cut(s) 916, 986, 989, 1144, 1293, 1424
MfeI CAATTG 1 cut(s) 1030
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 355
MluCI AATT 9 cut(s) 80, 90, 232, 422, 441, 559, 637, 1030, 1460
MlyI GAGTC 3 cut(s) 411, 956, 1348
MmeI TCCRAC 2 cut(s) 196, 510
MroI TCCGGA 1 cut(s) 1101
MseI TTAA 4 cut(s) 101, 236, 425, 954
MslI CAYNNNNRTG 1 cut(s) 906
MspA1I CMGCKG 1 cut(s) 191
MspI CCGG 2 cut(s) 452, 1102
MspR9I CCNGG 1 cut(s) 754
MunI CAATTG 1 cut(s) 1030
Mva1269I GAATGC 1 cut(s) 261
MvaI CCWGG 1 cut(s) 754
MvnI CGCG 2 cut(s) 191, 1282
MwoI GCNNNNNNNGC 1 cut(s) 1288
NcoI CCATGG 1 cut(s) 841
NdeII GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
NmuCI GTSAC 4 cut(s) 322, 415, 500, 845
NspI RCATGY 1 cut(s) 1162
PaeR7I CTCGAG 1 cut(s) 1428
PagI TCATGA 1 cut(s) 963
PciI ACATGT 1 cut(s) 1158
PctI GAATGC 1 cut(s) 261
PfeI GAWTC 3 cut(s) 212, 448, 1325
PfoI TCCNGGA 1 cut(s) 752
PkrI GCNGC 6 cut(s) 190, 193, 315, 973, 1281, 1293
PleI GAGTC 3 cut(s) 410, 955, 1348
PpsI GAGTC 3 cut(s) 410, 955, 1348
PscI ACATGT 1 cut(s) 1158
Psp124BI GAGCTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 752
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 1 cut(s) 752
PspPI GGNCC 2 cut(s) 454, 1176
PspXI VCTCGAGB 1 cut(s) 1428
PsrI GAACNNNNNNTAC 2 cut(s) 110, 142
PstI CTGCAG 1 cut(s) 1411
PsuI RGATCY 1 cut(s) 160
RsaI GTAC 5 cut(s) 119, 434, 599, 613, 1404
RsaNI GTAC 5 cut(s) 118, 433, 598, 612, 1403
RseI CAYNNNNRTG 1 cut(s) 906
SacI GAGCTC 1 cut(s) 355
SacII CCGCGG 1 cut(s) 192
SaqAI TTAA 4 cut(s) 101, 236, 425, 954
SatI GCNGC 6 cut(s) 189, 192, 314, 972, 1280, 1292
Sau3AI GATC 7 cut(s) 160, 217, 249, 835, 982, 1186, 1228
Sau96I GGNCC 2 cut(s) 454, 1176
SchI GAGTC 3 cut(s) 411, 956, 1348
ScrFI CCNGG 1 cut(s) 754
SduI GDGCHC 1 cut(s) 355
SfcI CTRYAG 1 cut(s) 1407
Sfr274I CTCGAG 1 cut(s) 1428
Sfr303I CCGCGG 1 cut(s) 192
SgrBI CCGCGG 1 cut(s) 192
SinI GGWCC 1 cut(s) 454
SlaI CTCGAG 1 cut(s) 1428
SmiMI CAYNNNNRTG 1 cut(s) 906
SmlI CTYRAG 1 cut(s) 1428
SmoI CTYRAG 1 cut(s) 1428
Sse9I AATT 9 cut(s) 80, 90, 232, 422, 441, 559, 637, 1030, 1460
SsiI CCGC 8 cut(s) 11, 189, 191, 313, 940, 1280, 1292, 1322
SspI AATATT 1 cut(s) 1339
SspMI CTAG 4 cut(s) 86, 575, 759, 1358
SstI GAGCTC 1 cut(s) 355
StyD4I CCNGG 1 cut(s) 752
StyI CCWWGG 3 cut(s) 374, 841, 1127
TaaI ACNGT 5 cut(s) 544, 1009, 1225, 1255, 1391
TaiI ACGT 1 cut(s) 417
TaqI TCGA 8 cut(s) 345, 476, 635, 906, 1090, 1113, 1352, 1429
TasI AATT 9 cut(s) 80, 90, 232, 422, 441, 559, 637, 1030, 1460
TatI WGTACW 1 cut(s) 117
TauI GCSGC 5 cut(s) 191, 194, 316, 1282, 1294
TfiI GAWTC 3 cut(s) 212, 448, 1325
Tru1I TTAA 4 cut(s) 101, 236, 425, 954
Tru9I TTAA 4 cut(s) 101, 236, 425, 954
TseFI GTSAC 4 cut(s) 322, 415, 500, 845
TseI GCWGC 1 cut(s) 971
Tsp45I GTSAC 4 cut(s) 322, 415, 500, 845
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 4 cut(s) 80, 441, 637, 1460
XbaI TCTAGA 1 cut(s) 1357
XceI RCATGY 1 cut(s) 1162
XhoI CTCGAG 1 cut(s) 1428
XspI CTAG 4 cut(s) 86, 575, 759, 1358
ZraI GACGTC 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.