Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0005378

Physical Location & Seq

Genomic Coordinates Forward (+)

54723956 .. 54726406

Gene Structure 2451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034799

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGTTGGCGCTCTCAAGACGTTGAAGCACAAAACAGCATACATTAAAGCATGGTGGCGGCCTAATGTCAGTCGAGGATACCTCTTTTTGGATAGAGCTCCTACTTCAGAGTTTTTGCCTTGGCCATCATCTTATCCTCCTTTTCGTGTCAATGAGGACGTCACTAGATTAAAAGTGTACCCGAAAATTGCAAATCCGATACAAGTACGAATAGTGCGTTCAATTTTGGAGATATTTAGAGAGGGTGACAAAAATGTAAGATGGTATGTAATGTCGGATGATGACACCATTTTTGTGCTTGATAATTTGGTTGAAGTTCTAGCAAAGTATGACCATACTAGGTATCATTACATTGGTACAAGTTCGGAGTTTGTCAAGTCTAATTCCGATTTTTCGTTCGATATGGCATTCGGTGGTGCTGGTTATATTTTGAGTTACCCACTAGTGGCAGCATTGTCAACAAAGTTGGATGATTGTATTGAGAGATATTCATACTCCTGGTTTAGCGATTTGACATTACACGAATGTTTAACCGATTTAGGAGTTATTCTAACTGAAGAAAAGGGGCTTCACCAGATTGATCTCCGTGGTGACATATCAGGTCTTCTGTCGTCTCATCCGCAATCTCCATTCCTCTCCATCCACCACCTCGATACTGTTGACCCAATCTTCCCTTCCATGAACCGCTCTGACTCCATTAACCACCTCATGAAAGCTGCAAAAGTTGATCCTTCTCGTCTTCTTCAACAAACCATATGCTACCACAGACCAAGCAATTGGTCTTTCTCAATCTCATGGGGTTATTCTGCTCACATTTACGAAAACATAATCCCCCGGAGCACTTTACGGAGGCCCATTGAGACATTCTCGCGTTGGAGGAACGCAAGCCGACCATTCTACATGTTCAACACCAGGTTGCCCTCCAAGGATCCATGTCGAGCTCCCCATGTGTTTTATTTTGATTCTATTGATCATCGTGTCGATGGAAGGAAGACCAAGACTATTACAACTTATTCAAGAGTAGCTCCGCGTGGTTTGGTGTCATGTTCTTCAAGTGGTAACCACTCTGCGGATTCCATCACCAAAATTGAGGTCTATACATCGCCAGAATTCCGTTTGGAGATGAAAGGAAAGGACTGCTGTGACATAGTACATGCAGCTGATATTCACACTACTCGAGTCATATACAGGTCTTGCATGGAGGGTGAAATTATCGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

407

Amino Acids

46.69

Weight (kDa)

8.49

Isoelectric Point (pI)

52.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fringe	PF02434	79 - 192	5.3e-13	Fringe-like
DUF604	PF04646	128 - 371	9.2e-96	Protein of unknown function, DUF604

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12460
fragaria_vesca	FvH4_1g09900 FvH4_3g28523 FvH4_3g28524
malus_domestica	MD03G1172600.v1.1
prunus_persica	Prupe.4G254000_v2.0.a1 Prupe.4G260000_v2.0.a1
pyrus_communis	pycom03g12980
rosa_chinensis	RchiOBHm_Chr5g0052781 RchiOBHm_Chr5g0052791
rosa_laevigata	RLG00000034797 RLG00000034799
rosa_multiflora	Rmu_sc0004335.1_g000002 Rmu_sc0004335.1_g000005 Rmu_sc0010119.1_g000002 Rmu_sc0017126.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028590 Rroxscaffold_1G00028610
rosa_rugosa	Rorug05G0269900
rosa_samantha	Rh5AG341800 Rh5AG341900 Rh5BG352400 Rh5BG352500 Rh5CG379100 Rh5CG379200 Rh5DG368800 Rh5DG368900
rosa_wichuraiana	Rw5G032220 Rw5G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	162
AccBSI	CCGCTC	1 cut(s)	687
AccII	CGCG	2 cut(s)	871, 1030
AciI	CCGC	5 cut(s)	58, 620, 685, 1028, 1070
AclWI	GGATC	3 cut(s)	722, 923, 936
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	1 cut(s)	1109
AcuI	CTGAAG	2 cut(s)	90, 576
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	4 cut(s)	179, 207, 358, 1152
AfiI	CCNNNNNNNGG	3 cut(s)	88, 445, 1069
AflIII	ACRYGT	1 cut(s)	900
AgsI	TTSAA	7 cut(s)	25, 222, 314, 746, 907, 1017, 1053
AhlI	ACTAGT	1 cut(s)	442
AjnI	CCWGG	2 cut(s)	497, 911
AjuI	GAANNNNNNNTTGG	2 cut(s)	658, 690
AluBI	AGCT	5 cut(s)	98, 716, 941, 1025, 1160
AluI	AGCT	5 cut(s)	98, 716, 941, 1025, 1160
Alw21I	GWGCWC	3 cut(s)	100, 842, 943
Alw26I	GTCTC	2 cut(s)	618, 854
AlwI	GGATC	3 cut(s)	722, 923, 936
Ama87I	CYCGRG	1 cut(s)	1176
AoxI	GGCC	3 cut(s)	59, 122, 851
ApeKI	GCWGC	3 cut(s)	449, 716, 1157
ApoI	RAATTY	1 cut(s)	1109
ArsI	GACNNNNNNTTYG	4 cut(s)	275, 307, 1077, 1109
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	852
AsuC2I	CCSGG	1 cut(s)	835
AsuHPI	GGTGA	5 cut(s)	257, 563, 602, 1072, 1217
AvaI	CYCGRG	1 cut(s)	1176
BalI	TGGCCA	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	928
BanII	GRGCYC	2 cut(s)	100, 943
BbsI	GAAGAC	3 cut(s)	596, 731, 998
Bbv12I	GWGCWC	3 cut(s)	100, 842, 943
BbvI	GCAGC	3 cut(s)	461, 703, 1169
BccI	CCATC	5 cut(s)	133, 255, 647, 977, 1085
BciT130I	CCWGG	2 cut(s)	499, 913
BciVI	GTATCC	1 cut(s)	71
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	1 cut(s)	835
BcoDI	GTCTC	2 cut(s)	618, 854
BcuI	ACTAGT	1 cut(s)	442
BfaI	CTAG	4 cut(s)	165, 320, 339, 443
BfoI	RGCGCY	1 cut(s)	12
BfuI	GTATCC	1 cut(s)	71
BisI	GCNGC	4 cut(s)	59, 450, 717, 1158
BlsI	GCNGC	4 cut(s)	60, 451, 718, 1159
Bme1390I	CCNGG	3 cut(s)	499, 835, 913
BmeT110I	CYCGRG	1 cut(s)	1176
BmgT120I	GGNCC	1 cut(s)	852
BmiI	GGNNCC	1 cut(s)	930
BmrFI	CCNGG	3 cut(s)	499, 835, 913
BpiI	GAAGAC	3 cut(s)	596, 731, 998
BplI	GAGNNNNNCTC	4 cut(s)	66, 98, 851, 883
BpuMI	CCSGG	1 cut(s)	835
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	4 cut(s)	119, 586, 833, 924
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 445, 1069
BseBI	CCWGG	2 cut(s)	499, 913
BseDI	CCNNGG	4 cut(s)	119, 586, 833, 924
BseGI	GGATG	4 cut(s)	283, 475, 616, 639
BseLI	CCNNNNNNNGG	3 cut(s)	88, 445, 1069
BseXI	GCAGC	3 cut(s)	461, 703, 1169
Bsh1236I	CGCG	2 cut(s)	871, 1030
BshFI	GGCC	3 cut(s)	61, 124, 853
BsiHKAI	GWGCWC	3 cut(s)	100, 842, 943
BsiHKCI	CYCGRG	1 cut(s)	1176
BsiSI	CCGG	1 cut(s)	835
BslI	CCNNNNNNNGG	3 cut(s)	88, 445, 1069
BsmAI	GTCTC	2 cut(s)	618, 854
BsmBI	CGTCTC	1 cut(s)	618
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	3 cut(s)	61, 124, 853
BsoBI	CYCGRG	1 cut(s)	1176
Bsp1286I	GDGCHC	3 cut(s)	100, 842, 943
Bsp143I	GATC	4 cut(s)	580, 727, 928, 970
BspACI	CCGC	5 cut(s)	58, 620, 685, 1028, 1070
BspANI	GGCC	3 cut(s)	61, 124, 853
BspFNI	CGCG	2 cut(s)	871, 1030
BspHI	TCATGA	1 cut(s)	708
BspLI	GGNNCC	1 cut(s)	930
BspPI	GGATC	3 cut(s)	722, 923, 936
BsrBI	CCGCTC	1 cut(s)	687
BssECI	CCNNGG	4 cut(s)	119, 586, 833, 924
BssMI	GATC	4 cut(s)	580, 727, 928, 970
BssNI	GRCGYC	1 cut(s)	159
BssT1I	CCWWGG	2 cut(s)	119, 924
Bst2UI	CCWGG	2 cut(s)	499, 913
Bst4CI	ACNGT	1 cut(s)	658
BstACI	GRCGYC	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	886
BstDSI	CCRYGG	1 cut(s)	586
BstEII	GGTNACC	1 cut(s)	1058
BstF5I	GGATG	4 cut(s)	283, 475, 616, 639
BstFNI	CGCG	2 cut(s)	871, 1030
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	4 cut(s)	583, 730, 931, 973
BstMAI	GTCTC	2 cut(s)	618, 854
BstMBI	GATC	4 cut(s)	580, 727, 928, 970
BstNI	CCWGG	2 cut(s)	499, 913
BstNSI	RCATGY	2 cut(s)	904, 1157
BstPI	GGTNACC	1 cut(s)	1058
BstSCI	CCNGG	3 cut(s)	497, 833, 911
BstUI	CGCG	2 cut(s)	871, 1030
BstV1I	GCAGC	3 cut(s)	461, 703, 1169
BstV2I	GAAGAC	3 cut(s)	596, 731, 998
BstX2I	RGATCY	1 cut(s)	928
BstXI	CCANNNNNNTGG	1 cut(s)	777
BstYI	RGATCY	1 cut(s)	928
BsuI	GTATCC	1 cut(s)	71
BsuRI	GGCC	3 cut(s)	61, 124, 853
BtgI	CCRYGG	1 cut(s)	586
BtgZI	GCGATG	1 cut(s)	1086
BtsCI	GGATG	4 cut(s)	283, 475, 616, 639
Cac8I	GCNNGC	1 cut(s)	886
CciI	TCATGA	1 cut(s)	708
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	1 cut(s)	852
CsiI	ACCWGGT	1 cut(s)	911
Csp6I	GTAC	4 cut(s)	178, 206, 357, 1151
CviQI	GTAC	4 cut(s)	178, 206, 357, 1151
DpnI	GATC	4 cut(s)	582, 729, 930, 972
DpnII	GATC	4 cut(s)	580, 727, 928, 970
EaeI	YGGCCR	1 cut(s)	122
Ecl136II	GAGCTC	2 cut(s)	98, 941
Eco130I	CCWWGG	2 cut(s)	119, 924
Eco24I	GRGCYC	2 cut(s)	100, 943
Eco53kI	GAGCTC	2 cut(s)	98, 941
Eco57I	CTGAAG	2 cut(s)	90, 576
Eco88I	CYCGRG	1 cut(s)	1176
Eco91I	GGTNACC	1 cut(s)	1058
EcoICRI	GAGCTC	2 cut(s)	98, 941
EcoO65I	GGTNACC	1 cut(s)	1058
EcoRI	GAATTC	1 cut(s)	1109
EcoRII	CCWGG	2 cut(s)	497, 911
EcoT14I	CCWWGG	2 cut(s)	119, 924
EcoT38I	GRGCYC	2 cut(s)	100, 943
ErhI	CCWWGG	2 cut(s)	119, 924
Esp3I	CGTCTC	1 cut(s)	618
FauNDI	CATATG	1 cut(s)	755
FbaI	TGATCA	1 cut(s)	970
Fnu4HI	GCNGC	4 cut(s)	59, 450, 717, 1158
FokI	GGATG	4 cut(s)	290, 482, 603, 626
FriOI	GRGCYC	2 cut(s)	100, 943
Fsp4HI	GCNGC	4 cut(s)	59, 450, 717, 1158
FspBI	CTAG	4 cut(s)	165, 320, 339, 443
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	4 cut(s)	59, 450, 717, 1158
HaeII	RGCGCY	1 cut(s)	12
HaeIII	GGCC	3 cut(s)	61, 124, 853
HapII	CCGG	1 cut(s)	835
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	2 cut(s)	459, 661
HindII	GTYRAC	2 cut(s)	459, 661
HinfI	GANTC	4 cut(s)	692, 962, 1073, 1179
HpaII	CCGG	1 cut(s)	835
HphI	GGTGA	5 cut(s)	257, 563, 602, 1072, 1217
Hpy166II	GTNNAC	3 cut(s)	178, 459, 661
Hpy188I	TCNGA	6 cut(s)	109, 198, 277, 367, 388, 691
Hpy188III	TCNNGA	3 cut(s)	16, 709, 1017
Hpy8I	GTNNAC	3 cut(s)	178, 459, 661
HpyAV	CCTTC	3 cut(s)	684, 741, 981
HpyCH4III	ACNGT	1 cut(s)	658
HpyCH4IV	ACGT	2 cut(s)	20, 159
HpyCH4V	TGCA	4 cut(s)	191, 719, 1157, 1197
HpySE526I	ACGT	2 cut(s)	20, 159
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	1 cut(s)	9
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	4 cut(s)	580, 727, 928, 970
LmnI	GCTCC	4 cut(s)	103, 837, 946, 1030
Lsp1109I	GCAGC	3 cut(s)	461, 703, 1169
MabI	ACCWGGT	1 cut(s)	911
MaeI	CTAG	4 cut(s)	165, 320, 339, 443
MaeII	ACGT	2 cut(s)	20, 159
MaeIII	GTNAC	6 cut(s)	160, 245, 434, 590, 1058, 1142
MalI	GATC	4 cut(s)	582, 729, 930, 972
MbiI	CCGCTC	1 cut(s)	687
MboI	GATC	4 cut(s)	580, 727, 928, 970
MboII	GAAGA	7 cut(s)	569, 596, 661, 731, 734, 1003, 1041
MfeI	CAATTG	1 cut(s)	775
MflI	RGATCY	1 cut(s)	928
MhlI	GDGCHC	3 cut(s)	100, 842, 943
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	8 cut(s)	186, 222, 304, 382, 775, 1086, 1109, 1209
MluNI	TGGCCA	1 cut(s)	124
MlyI	GAGTC	2 cut(s)	686, 1188
MmeI	TCCRAC	3 cut(s)	255, 447, 854
Mox20I	TGGCCA	1 cut(s)	124
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	4 cut(s)	45, 170, 530, 699
MslI	CAYNNNNRTG	1 cut(s)	293
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	1 cut(s)	1160
MspI	CCGG	1 cut(s)	835
MspR9I	CCNGG	3 cut(s)	499, 835, 913
MunI	CAATTG	1 cut(s)	775
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	2 cut(s)	499, 913
MvnI	CGCG	2 cut(s)	871, 1030
NciI	CCSGG	1 cut(s)	835
NdeI	CATATG	1 cut(s)	755
NdeII	GATC	4 cut(s)	580, 727, 928, 970
NlaIV	GGNNCC	1 cut(s)	930
NmuCI	GTSAC	4 cut(s)	160, 245, 590, 1142
NspI	RCATGY	2 cut(s)	904, 1157
PaeR7I	CTCGAG	1 cut(s)	1176
PagI	TCATGA	1 cut(s)	708
PciI	ACATGT	1 cut(s)	900
PcsI	WCGNNNNNNNCGW	1 cut(s)	214
PctI	GAATGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	962, 1073
PkrI	GCNGC	4 cut(s)	60, 451, 718, 1159
PleI	GAGTC	2 cut(s)	686, 1187
PpsI	GAGTC	2 cut(s)	686, 1187
PscI	ACATGT	1 cut(s)	900
Psp124BI	GAGCTC	2 cut(s)	100, 943
Psp6I	CCWGG	2 cut(s)	497, 911
PspEI	GGTNACC	1 cut(s)	1058
PspGI	CCWGG	2 cut(s)	497, 911
PspN4I	GGNNCC	1 cut(s)	930
PspPI	GGNCC	1 cut(s)	852
PspXI	VCTCGAGB	1 cut(s)	1176
PsuI	RGATCY	1 cut(s)	928
PvuII	CAGCTG	1 cut(s)	1160
RsaI	GTAC	4 cut(s)	179, 207, 358, 1152
RsaNI	GTAC	4 cut(s)	178, 206, 357, 1151
RseI	CAYNNNNRTG	1 cut(s)	293
SacI	GAGCTC	2 cut(s)	100, 943
SaqAI	TTAA	4 cut(s)	45, 170, 530, 699
SatI	GCNGC	4 cut(s)	59, 450, 717, 1158
Sau3AI	GATC	4 cut(s)	580, 727, 928, 970
Sau96I	GGNCC	1 cut(s)	852
SchI	GAGTC	2 cut(s)	686, 1188
ScrFI	CCNGG	3 cut(s)	499, 835, 913
SduI	GDGCHC	3 cut(s)	100, 842, 943
SexAI	ACCWGGT	1 cut(s)	911
Sfr274I	CTCGAG	1 cut(s)	1176
SlaI	CTCGAG	1 cut(s)	1176
SmiMI	CAYNNNNRTG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	14, 1176
SmoI	CTYRAG	2 cut(s)	14, 1176
SpeI	ACTAGT	1 cut(s)	442
Sse9I	AATT	8 cut(s)	186, 222, 304, 382, 775, 1086, 1109, 1209
SsiI	CCGC	5 cut(s)	58, 620, 685, 1028, 1070
SspMI	CTAG	4 cut(s)	165, 320, 339, 443
SstI	GAGCTC	2 cut(s)	100, 943
StyD4I	CCNGG	3 cut(s)	497, 833, 911
StyI	CCWWGG	2 cut(s)	119, 924
TaaI	ACNGT	1 cut(s)	658
TaiI	ACGT	2 cut(s)	23, 162
TaqI	TCGA	6 cut(s)	73, 399, 651, 937, 981, 1177
TasI	AATT	8 cut(s)	186, 222, 304, 382, 775, 1086, 1109, 1209
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	1 cut(s)	61
TfiI	GAWTC	2 cut(s)	962, 1073
Tru1I	TTAA	4 cut(s)	45, 170, 530, 699
Tru9I	TTAA	4 cut(s)	45, 170, 530, 699
TseFI	GTSAC	4 cut(s)	160, 245, 590, 1142
TseI	GCWGC	3 cut(s)	449, 716, 1157
Tsp45I	GTSAC	4 cut(s)	160, 245, 590, 1142
TspDTI	ATGAA	4 cut(s)	480, 695, 725, 1139
TspGWI	ACGGA	3 cut(s)	575, 862, 1103
XapI	RAATTY	1 cut(s)	1109
XceI	RCATGY	2 cut(s)	904, 1157
XhoI	CTCGAG	1 cut(s)	1176
XspI	CTAG	4 cut(s)	165, 320, 339, 443
ZraI	GACGTC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.