Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005378

Physical Location & Seq

Genomic Coordinates Reverse (-)

18719382 .. 18721230

Gene Structure 1849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGTGTTCTCTACTGTCCATCAACTCTAGCTCATCTAAACCAAAACTAGCTTTATGCAACTCTTTTCTAGCTATTTCAGCACTAATCCTACTATCTTTTTACATATTTTTCTTTGACAAATCACACAATTACCAACCTTCAAATTTCTTGGAAGCCTTCAAGCAAAGCTGTCCGGAAGCTAATACAAGTTCCCCTAGTCCCCTACCTCCTACCAATCTAAACCACATTGTGGTCGGAATTGTTGGCTCCATGAACACATGGAAGAAGAAGAAAGCATACACTGAAGCATGGTGGAAACCTAATGTTACCCGCGGTTACCTCTTTTTAGATCGAGCTCCTACGCTGGAATTTCTACCATGGCCTTCATCTGCTCCTCCTTTTCGAGTCAATGAGGACATCACCGGATTCAAAGTGTACCCAAAAATTGTGAGGCCAGACCAAGTACGAATAATACGTACAATTTTGGAGACATTCAGAGAGGGTGACAAAGATGTGAGATGGTATGTAATGGGTGATGATGATACCGTCCTTTTTGTTGATAACTTAGTTGAGGTTCTTGCAAAGTATGACCACACTAAGTACTATTACATTGGTTCCAGTTCGGAATGTATTCACTCTAACTTCGATTTTTCCTTCGATATGGCCTTTGGCGGCGGCGGTTATGCTTTGAGCTACCCGTTGGTGGCAACATTGGCAACAAAGTTGGATGAGTGTATTGAGAGATATCCATACTTGCGGTTCAGTGATTTTATGTTACATATATGTTTGGCTGATCTAGGAGTCGCTCTAACTCAAGAAAAGGGGTTTCACCAGATTGATCTCCATGGTGACATATCAGGTCTTCTATCATCTCATCCACAATCTCCTCTCCTCTCCCTCCACCACATTGACACCATAGACCCAATCTTCCCCTTCATGAGCCGCTCTGAGTCCATTAACCACCTCATGAGGCCAGCAAAAGTTGACCCTTCTCGTCTTCTTCAACAAACCATCTGCTACCACAGACCAAGCAATTGGTCTTTCTCAATCTCATGGGGCTATTCTGCTCACATTTATGAGAACGTAATTCCCCGGAGCATTTTACGGAGACCCCTCGAGACATTTAGGCCTTGGAAGAATACAAGACCGCCATTCTACGTGTTCAACACCCGGCTAACTTACAATGATCCATGTCAAGCTCCTCATCTGTTTTCCTTCGATTCTATTGATGAGAATGTTAAAGGGAACCAAACTGTTACAACTTATTCACGAACAGCTCCACGTGGTTTGCCACCTTGTTCTTCAAGTGGAAACCACTCGGCGGATTTTATCACCAAAATTCAGGTTACTTTGCCTGCAATACGTTTGGAGGCCAGAGGAATAGACTGCTGTGATATAGCATATGCACCTGACATTAACACTACTCAAGTTATATACAGAGCTTGCATGGAGGGTGAAATTATCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF604

Protein Analysis

483

Amino Acids

54.77

Weight (kDa)

6.73

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12460
fragaria_vesca	FvH4_1g09900 FvH4_3g28523 FvH4_3g28524
malus_domestica	MD03G1172600.v1.1
prunus_persica	Prupe.4G254000_v2.0.a1 Prupe.4G260000_v2.0.a1
pyrus_communis	pycom03g12980
rosa_chinensis	RchiOBHm_Chr5g0052781 RchiOBHm_Chr5g0052791
rosa_laevigata	RLG00000034797 RLG00000034799
rosa_multiflora	Rmu_sc0004335.1_g000002 Rmu_sc0004335.1_g000005 Rmu_sc0010119.1_g000002 Rmu_sc0017126.1_g000001
rosa_roxburghii	Rroxscaffold_1G00028590 Rroxscaffold_1G00028610
rosa_rugosa	Rorug05G0269900
rosa_samantha	Rh5AG341800 Rh5AG341900 Rh5BG352400 Rh5BG352500 Rh5CG379100 Rh5CG379200 Rh5DG368800 Rh5DG368900
rosa_wichuraiana	Rw5G032220 Rw5G032230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	229
AccBSI	CCGCTC	1 cut(s)	924
AccII	CGCG	1 cut(s)	312
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	9 cut(s)	310, 312, 651, 654, 657, 736, 922, 1127, 1301
AclWI	GGATC	1 cut(s)	1160
AcsI	RAATTY	3 cut(s)	142, 347, 1317
AcuI	CTGAAG	1 cut(s)	303
AcvI	CACGTG	1 cut(s)	1262
AdeI	CACNNNGTG	1 cut(s)	229
AfaI	GTAC	4 cut(s)	416, 444, 457, 581
AfiI	CCNNNNNNNGG	3 cut(s)	229, 682, 1300
AflIII	ACRYGT	1 cut(s)	1137
AgsI	TTSAA	6 cut(s)	141, 160, 409, 983, 1144, 1284
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	3 cut(s)	461, 1081, 1091
AlwI	GGATC	1 cut(s)	1160
Ama87I	CYCGRG	1 cut(s)	1094
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	6 cut(s)	359, 431, 642, 950, 1106, 1350
ApoI	RAATTY	3 cut(s)	142, 347, 1317
Asp700I	GAANNNNTTC	1 cut(s)	609
AsuC2I	CCSGG	2 cut(s)	1072, 1150
AsuHPI	GGTGA	7 cut(s)	391, 494, 524, 800, 839, 1303, 1445
AvaI	CYCGRG	1 cut(s)	1094
BanII	GRGCYC	1 cut(s)	337
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BbrPI	CACGTG	1 cut(s)	1262
BbsI	GAAGAC	2 cut(s)	833, 968
Bbv12I	GWGCWC	1 cut(s)	337
BccI	CCATC	3 cut(s)	26, 492, 998
BcnI	CCSGG	2 cut(s)	1072, 1150
BcoDI	GTCTC	3 cut(s)	461, 1081, 1091
BfaI	CTAG	5 cut(s)	27, 47, 68, 195, 776
BisI	GCNGC	3 cut(s)	652, 655, 922
BlsI	GCNGC	3 cut(s)	653, 656, 923
BmcAI	AGTACT	1 cut(s)	581
Bme1390I	CCNGG	2 cut(s)	1072, 1150
BmeT110I	CYCGRG	1 cut(s)	1094
BmiI	GGNNCC	3 cut(s)	247, 595, 1226
BmrFI	CCNGG	2 cut(s)	1072, 1150
BpiI	GAAGAC	2 cut(s)	833, 968
BpuEI	CTTGAG	2 cut(s)	777, 1389
BpuMI	CCSGG	2 cut(s)	1072, 1150
BsaAI	YACGTR	3 cut(s)	455, 1138, 1262
BsaI	GGTCTC	1 cut(s)	1081
BsaJI	CCNNGG	5 cut(s)	310, 356, 823, 1070, 1109
BsaWI	WCCGGW	2 cut(s)	172, 401
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 682, 1300
Bse1I	ACTGG	1 cut(s)	597
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	5 cut(s)	310, 356, 823, 1070, 1109
BseGI	GGATG	2 cut(s)	712, 853
BseLI	CCNNNNNNNGG	3 cut(s)	229, 682, 1300
BseMII	CTCAG	1 cut(s)	918
BseNI	ACTGG	1 cut(s)	597
BseRI	GAGGAG	4 cut(s)	363, 855, 860, 1170
Bsh1236I	CGCG	1 cut(s)	312
BshFI	GGCC	6 cut(s)	361, 433, 644, 952, 1108, 1352
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	1094
BsiSI	CCGG	4 cut(s)	173, 402, 1072, 1150
BslFI	GGGAC	1 cut(s)	183
BslI	CCNNNNNNNGG	3 cut(s)	229, 682, 1300
BsmAI	GTCTC	3 cut(s)	461, 1081, 1091
BsmFI	GGGAC	1 cut(s)	183
BsnI	GGCC	6 cut(s)	361, 433, 644, 952, 1108, 1352
Bso31I	GGTCTC	1 cut(s)	1081
BsoBI	CYCGRG	1 cut(s)	1094
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	4 cut(s)	328, 772, 817, 1165
Bsp19I	CCATGG	2 cut(s)	356, 823
BspACI	CCGC	9 cut(s)	310, 312, 651, 654, 657, 736, 922, 1127, 1301
BspANI	GGCC	6 cut(s)	361, 433, 644, 952, 1108, 1352
BspCNI	CTCAG	1 cut(s)	919
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	1 cut(s)	312
BspHI	TCATGA	2 cut(s)	915, 945
BspLI	GGNNCC	3 cut(s)	247, 595, 1226
BspPI	GGATC	1 cut(s)	1160
BspTNI	GGTCTC	1 cut(s)	1081
BsrBI	CCGCTC	1 cut(s)	924
BsrI	ACTGG	1 cut(s)	597
BssECI	CCNNGG	5 cut(s)	310, 356, 823, 1070, 1109
BssMI	GATC	4 cut(s)	328, 772, 817, 1165
BssT1I	CCWWGG	3 cut(s)	356, 823, 1109
Bst4CI	ACNGT	3 cut(s)	15, 526, 1234
BstBAI	YACGTR	3 cut(s)	455, 1138, 1262
BstC8I	GCNNGC	3 cut(s)	954, 1335, 1423
BstDEI	CTNAG	3 cut(s)	544, 576, 927
BstDSI	CCRYGG	3 cut(s)	310, 356, 823
BstEII	GGTNACC	1 cut(s)	314
BstF5I	GGATG	2 cut(s)	712, 853
BstFNI	CGCG	1 cut(s)	312
BstKTI	GATC	4 cut(s)	331, 775, 820, 1168
BstMAI	GTCTC	3 cut(s)	461, 1081, 1091
BstMBI	GATC	4 cut(s)	328, 772, 817, 1165
BstMWI	GCNNNNNNNGC	2 cut(s)	77, 692
BstPI	GGTNACC	1 cut(s)	314
BstSCI	CCNGG	2 cut(s)	1070, 1148
BstSNI	TACGTA	1 cut(s)	455
BstUI	CGCG	1 cut(s)	312
BstV2I	GAAGAC	2 cut(s)	833, 968
BstXI	CCANNNNNNTGG	1 cut(s)	1014
BsuRI	GGCC	6 cut(s)	361, 433, 644, 952, 1108, 1352
BtgI	CCRYGG	3 cut(s)	310, 356, 823
BtsCI	GGATG	2 cut(s)	712, 853
BtsIMutI	CAGTG	2 cut(s)	279, 748
Cac8I	GCNNGC	3 cut(s)	954, 1335, 1423
CciI	TCATGA	2 cut(s)	915, 945
Cfr42I	CCGCGG	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	415, 443, 456, 580
CspCI	CAANNNNNGTGG	2 cut(s)	1248, 1283
CviQI	GTAC	4 cut(s)	415, 443, 456, 580
DdeI	CTNAG	3 cut(s)	544, 576, 927
DpnI	GATC	4 cut(s)	330, 774, 819, 1167
DpnII	GATC	4 cut(s)	328, 772, 817, 1165
DraIII	CACNNNGTG	1 cut(s)	229
EciI	GGCGGA	1 cut(s)	1316
Ecl136II	GAGCTC	1 cut(s)	335
Eco105I	TACGTA	1 cut(s)	455
Eco130I	CCWWGG	3 cut(s)	356, 823, 1109
Eco147I	AGGCCT	1 cut(s)	1108
Eco24I	GRGCYC	1 cut(s)	337
Eco31I	GGTCTC	1 cut(s)	1081
Eco32I	GATATC	1 cut(s)	725
Eco53kI	GAGCTC	1 cut(s)	335
Eco57I	CTGAAG	1 cut(s)	303
Eco72I	CACGTG	1 cut(s)	1262
Eco88I	CYCGRG	1 cut(s)	1094
Eco91I	GGTNACC	1 cut(s)	314
EcoICRI	GAGCTC	1 cut(s)	335
EcoO65I	GGTNACC	1 cut(s)	314
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	3 cut(s)	356, 823, 1109
EcoT38I	GRGCYC	1 cut(s)	337
ErhI	CCWWGG	3 cut(s)	356, 823, 1109
FaqI	GGGAC	1 cut(s)	183
FauI	CCCGC	1 cut(s)	317
FauNDI	CATATG	1 cut(s)	1381
Fnu4HI	GCNGC	3 cut(s)	652, 655, 922
FokI	GGATG	2 cut(s)	719, 840
FriOI	GRGCYC	1 cut(s)	337
Fsp4HI	GCNGC	3 cut(s)	652, 655, 922
FspBI	CTAG	5 cut(s)	27, 47, 68, 195, 776
GluI	GCNGC	3 cut(s)	652, 655, 922
HaeIII	GGCC	6 cut(s)	361, 433, 644, 952, 1108, 1352
HapII	CCGG	4 cut(s)	173, 402, 1072, 1150
HincII	GTYRAC	1 cut(s)	964
HindII	GTYRAC	1 cut(s)	964
HinfI	GANTC	5 cut(s)	384, 405, 780, 929, 1199
HpaII	CCGG	4 cut(s)	173, 402, 1072, 1150
HphI	GGTGA	7 cut(s)	391, 494, 524, 800, 839, 1303, 1445
Hpy166II	GTNNAC	2 cut(s)	415, 964
Hpy188I	TCNGA	4 cut(s)	236, 476, 604, 928
Hpy188III	TCNNGA	6 cut(s)	173, 794, 916, 946, 1096, 1248
Hpy8I	GTNNAC	2 cut(s)	415, 964
HpyAV	CCTTC	7 cut(s)	147, 166, 372, 643, 922, 978, 1204
HpyCH4III	ACNGT	3 cut(s)	15, 526, 1234
HpyCH4IV	ACGT	5 cut(s)	454, 1062, 1137, 1261, 1342
HpyCH4V	TGCA	5 cut(s)	57, 560, 1337, 1385, 1425
HpyF10VI	GCNNNNNNNGC	2 cut(s)	77, 692
HpyF3I	CTNAG	3 cut(s)	544, 576, 927
HpySE526I	ACGT	5 cut(s)	454, 1062, 1137, 1261, 1342
Kpn2I	TCCGGA	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	313
Kzo9I	GATC	4 cut(s)	328, 772, 817, 1165
LmnI	GCTCC	6 cut(s)	251, 340, 376, 1074, 1183, 1261
MaeI	CTAG	5 cut(s)	27, 47, 68, 195, 776
MaeII	ACGT	5 cut(s)	454, 1062, 1137, 1261, 1342
MaeIII	GTNAC	7 cut(s)	304, 314, 482, 753, 827, 1234, 1324
MalI	GATC	4 cut(s)	330, 774, 819, 1167
MbiI	CCGCTC	1 cut(s)	924
MboI	GATC	4 cut(s)	328, 772, 817, 1165
MboII	GAAGA	9 cut(s)	274, 277, 280, 833, 898, 968, 971, 1126, 1272
MfeI	CAATTG	1 cut(s)	1012
MhlI	GDGCHC	1 cut(s)	337
MlyI	GAGTC	3 cut(s)	393, 789, 938
MmeI	TCCRAC	2 cut(s)	214, 684
MroI	TCCGGA	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	609
MseI	TTAA	3 cut(s)	936, 1218, 1395
MslI	CAYNNNNRTG	1 cut(s)	1053
MspA1I	CMGCKG	1 cut(s)	312
MspI	CCGG	4 cut(s)	173, 402, 1072, 1150
MspR9I	CCNGG	2 cut(s)	1072, 1150
MunI	CAATTG	1 cut(s)	1012
MvnI	CGCG	1 cut(s)	312
MwoI	GCNNNNNNNGC	2 cut(s)	77, 692
NciI	CCSGG	2 cut(s)	1072, 1150
NcoI	CCATGG	2 cut(s)	356, 823
NdeI	CATATG	1 cut(s)	1381
NdeII	GATC	4 cut(s)	328, 772, 817, 1165
NlaIV	GGNNCC	3 cut(s)	247, 595, 1226
NmeAIII	GCCGAG	1 cut(s)	1277
NmuCI	GTSAC	2 cut(s)	482, 827
PaeR7I	CTCGAG	1 cut(s)	1094
PagI	TCATGA	2 cut(s)	915, 945
PceI	AGGCCT	1 cut(s)	1108
PcsI	WCGNNNNNNNCGW	1 cut(s)	451
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	2 cut(s)	405, 1199
PflMI	CCANNNNNTGG	1 cut(s)	229
PkrI	GCNGC	3 cut(s)	653, 656, 923
PleI	GAGTC	3 cut(s)	392, 788, 937
PmaCI	CACGTG	1 cut(s)	1262
PmlI	CACGTG	1 cut(s)	1262
PpsI	GAGTC	3 cut(s)	392, 788, 937
Ppu21I	YACGTR	3 cut(s)	455, 1138, 1262
Psp124BI	GAGCTC	1 cut(s)	337
PspCI	CACGTG	1 cut(s)	1262
PspEI	GGTNACC	1 cut(s)	314
PspN4I	GGNNCC	3 cut(s)	247, 595, 1226
RsaI	GTAC	4 cut(s)	416, 444, 457, 581
RsaNI	GTAC	4 cut(s)	415, 443, 456, 580
RseI	CAYNNNNRTG	1 cut(s)	1053
SacI	GAGCTC	1 cut(s)	337
SacII	CCGCGG	1 cut(s)	313
SaqAI	TTAA	3 cut(s)	936, 1218, 1395
SatI	GCNGC	3 cut(s)	652, 655, 922
Sau3AI	GATC	4 cut(s)	328, 772, 817, 1165
ScaI	AGTACT	1 cut(s)	581
SchI	GAGTC	3 cut(s)	393, 789, 938
ScrFI	CCNGG	2 cut(s)	1072, 1150
SduI	GDGCHC	1 cut(s)	337
Sfr274I	CTCGAG	1 cut(s)	1094
Sfr303I	CCGCGG	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	313
SlaI	CTCGAG	1 cut(s)	1094
SmiMI	CAYNNNNRTG	1 cut(s)	1053
SmlI	CTYRAG	3 cut(s)	792, 1094, 1404
SmoI	CTYRAG	3 cut(s)	792, 1094, 1404
SnaBI	TACGTA	1 cut(s)	455
SseBI	AGGCCT	1 cut(s)	1108
SsiI	CCGC	9 cut(s)	310, 312, 651, 654, 657, 736, 922, 1127, 1301
SspMI	CTAG	5 cut(s)	27, 47, 68, 195, 776
SstI	GAGCTC	1 cut(s)	337
StuI	AGGCCT	1 cut(s)	1108
StyD4I	CCNGG	2 cut(s)	1070, 1148
StyI	CCWWGG	3 cut(s)	356, 823, 1109
TaaI	ACNGT	3 cut(s)	15, 526, 1234
TaiI	ACGT	5 cut(s)	457, 1065, 1140, 1264, 1345
TaqI	TCGA	6 cut(s)	331, 382, 624, 636, 1095, 1197
TatI	WGTACW	1 cut(s)	579
TauI	GCSGC	3 cut(s)	654, 657, 924
TfiI	GAWTC	2 cut(s)	405, 1199
Tru1I	TTAA	3 cut(s)	936, 1218, 1395
Tru9I	TTAA	3 cut(s)	936, 1218, 1395
TscAI	CASTG	2 cut(s)	286, 748
TseFI	GTSAC	2 cut(s)	482, 827
Tsp45I	GTSAC	2 cut(s)	482, 827
TspDTI	ATGAA	3 cut(s)	266, 354, 904
TspGWI	ACGGA	1 cut(s)	1099
TspRI	CASTG	2 cut(s)	286, 748
Van91I	CCANNNNNTGG	1 cut(s)	229
XapI	RAATTY	3 cut(s)	142, 347, 1317
XhoI	CTCGAG	1 cut(s)	1094
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	5 cut(s)	27, 47, 68, 195, 776
ZrmI	AGTACT	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.