Rw5G032230

Protein of unknown function, DUF604

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
54389693 .. 54392423
2731 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032230.1

Sequence Viewer

Length: 1467 bp
ATGCGTTCCCCACGCTCCCACAACTCTACCACAACTCGACAAAAACAAGCAAACCCTTTATCTTTTGGAGTTCTATTAAAATCCCTAGCAATTTCAAGCTTAATCCTAGCAATTTCAAGCTTAATCCTAATATCGTTGTACATTTTTTTCTTTGACGAATCATATAACTATCAACCTTCCAGTCTCCTCATCAGAACCTTCCAAAAAAACTTCCAGGCCACGGCTACACGTCCCCACAGCCACCCTCCTACCAATTTAAGCCACATTGTGATCGGAATGGTTGGCGCTCTCAAGACATTGAAGCGCAAAACAGCATACATTAAAGCATGGTGGAGGCCTAATGTCAGTCGAGGATACCTCTTTTTGGATAGAGCTCCTACTTCAGAGTTTTTGCCTTGGCCATCATCTTATCCTCCTTTTCGTGTCAATGAGGACGTCACTAGATTAAAAGTATACCCGAAAATTGCGAATCCGATACAAGTACGAATAGTGCGTTCAATTTTGGAGATATTTAGAGAGGGTGACAAAAATGTAAGATGGTATGTAATGTCGGATGATGACACCATTTTTGTGCTTGATAATTTGGTTGAAGTTCTAGCAAAGTATGACCATACTAGGTATCATTACATTGGTACAAGTTCGGAGTTTGTCAAGTCTAATTCCGATTTTTCGTTCGATATGGCATTCGGTGGTGCTGGTTATATTTTGAGTTACCCACTGGTGGCAGCATTGTCAACAAAGTTGGATGATTGTATTGAGAGATATTCGTACTCCTGGTTTAGCGATTTGACATTACACGAATGTTTAACCGATTTAGGAGTTATTCTAACGGAAGAAAAGGGGCTTCACCAGATTGATCTTCGTGGTGACATATCAGGTCTTCTATCGTCTCATCCGCAATCTCCATTCCTCTCCATCCACCACCTCGATACTGTTGACCCAATCTTCCCCTCCATGAACCGCTCTGACTCCATTAACCACCTCATGAAAGCTGCAAAAGTTGATCCTTCTCGTCTTCTGCAACAAACCATATGCTACCACAGACCAAGCAATTGGTCTTTCTCAATCTCATGGGGTTATTCTGCTCACATTTATGAAAACATAATCCCCCGGAGCACTTTAAGGAGGCCCATTGAGACATTCTCGCGTTGGAGGAACGCAAGCCGACCATTCTACATGTTCAACACCAGGTTGCCCTCCAAGGATCCATGTCGAGCTCCCCATGTGTTTTATTTTGATTCTATTGATCATCGTGTCGATGGAAGGAAGACTATGACTGTTACAACTTATTCAAGAGTAGCTCCGCGTGGTTTGGTGTCATGTTCTTCAAGTGGTAACCACTCTGCGGATTCCATCACCAAAATTGAGATGAAAGGAAAGGACTGCTGTGACATAGTACATGCAGCTGATATTCACACTACTCGAGTCACATACAGGTCTTGCATGGAGGGTGAAATTATCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

55.78

Weight (kDa)

9.15

Isoelectric Point (pI)

52.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fringe PF02434 171 - 284 7.4e-13 Fringe-like
DUF604 PF04646 220 - 460 5.4e-94 Protein of unknown function, DUF604
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 438
AccBSI CCGCTC 1 cut(s) 963
AccI GTMKAC 1 cut(s) 453
AccII CGCG 2 cut(s) 1147, 1306
AciI CCGC 4 cut(s) 896, 961, 1304, 1346
AclWI GGATC 3 cut(s) 998, 1199, 1212
AcoI YGGCCR 1 cut(s) 398
AcuI CTGAAG 1 cut(s) 366
AcyI GRCGYC 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 268
AfaI GTAC 5 cut(s) 140, 483, 634, 770, 1398
AfiI CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
AflIII ACRYGT 2 cut(s) 227, 1176
AgsI TTSAA 8 cut(s) 96, 117, 301, 498, 590, 1183, 1293, 1329
AjiI CACGTC 1 cut(s) 230
AjnI CCWGG 3 cut(s) 213, 773, 1187
AluBI AGCT 7 cut(s) 99, 120, 374, 992, 1217, 1301, 1406
AluI AGCT 7 cut(s) 99, 120, 374, 992, 1217, 1301, 1406
Alw21I GWGCWC 3 cut(s) 376, 1118, 1219
Alw26I GTCTC 3 cut(s) 188, 894, 1130
AlwI GGATC 3 cut(s) 998, 1199, 1212
Ama87I CYCGRG 1 cut(s) 1422
AoxI GGCC 4 cut(s) 216, 335, 398, 1127
ApeKI GCWGC 3 cut(s) 725, 992, 1403
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
AspLEI GCGC 2 cut(s) 287, 306
AspS9I GGNCC 1 cut(s) 1128
AsuC2I CCSGG 1 cut(s) 1111
AsuHPI GGTGA 5 cut(s) 533, 839, 878, 1348, 1463
AvaI CYCGRG 1 cut(s) 1422
BalI TGGCCA 1 cut(s) 400
BamHI GGATCC 1 cut(s) 1204
BanII GRGCYC 2 cut(s) 376, 1219
BbsI GAAGAC 3 cut(s) 872, 1007, 1274
Bbv12I GWGCWC 3 cut(s) 376, 1118, 1219
BbvI GCAGC 3 cut(s) 737, 979, 1415
BccI CCATC 5 cut(s) 409, 531, 923, 1253, 1361
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 3 cut(s) 215, 775, 1189
BciVI GTATCC 1 cut(s) 347
BclI TGATCA 1 cut(s) 1246
BcnI CCSGG 1 cut(s) 1111
BcoDI GTCTC 3 cut(s) 188, 894, 1130
BfaI CTAG 5 cut(s) 86, 107, 441, 596, 615
BfoI RGCGCY 1 cut(s) 288
BfuI GTATCC 1 cut(s) 347
BisI GCNGC 3 cut(s) 726, 993, 1404
BlsI GCNGC 3 cut(s) 727, 994, 1405
Bme1390I CCNGG 4 cut(s) 215, 775, 1111, 1189
BmeT110I CYCGRG 1 cut(s) 1422
BmgBI CACGTC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 1128
BmiI GGNNCC 1 cut(s) 1206
BmrFI CCNGG 4 cut(s) 215, 775, 1111, 1189
BpiI GAAGAC 3 cut(s) 872, 1007, 1274
BplI GAGNNNNNCTC 4 cut(s) 342, 374, 1127, 1159
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 1111
BsaHI GRCGYC 1 cut(s) 435
BsaJI CCNNGG 4 cut(s) 219, 395, 1109, 1200
Bsc4I CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
Bse1I ACTGG 2 cut(s) 180, 723
BseBI CCWGG 3 cut(s) 215, 775, 1189
BseDI CCNNGG 4 cut(s) 219, 395, 1109, 1200
BseGI GGATG 4 cut(s) 559, 751, 892, 915
BseLI CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
BseNI ACTGG 2 cut(s) 180, 723
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 737, 979, 1415
Bsh1236I CGCG 2 cut(s) 1147, 1306
BshFI GGCC 4 cut(s) 218, 337, 400, 1129
BsiHKAI GWGCWC 3 cut(s) 376, 1118, 1219
BsiHKCI CYCGRG 1 cut(s) 1422
BsiSI CCGG 1 cut(s) 1111
BslFI GGGAC 1 cut(s) 216
BslI CCNNNNNNNGG 4 cut(s) 220, 364, 721, 1345
BsmAI GTCTC 3 cut(s) 188, 894, 1130
BsmBI CGTCTC 1 cut(s) 894
BsmFI GGGAC 1 cut(s) 216
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 4 cut(s) 218, 337, 400, 1129
BsoBI CYCGRG 1 cut(s) 1422
Bsp1286I GDGCHC 3 cut(s) 376, 1118, 1219
Bsp1407I TGTACA 1 cut(s) 138
Bsp143I GATC 5 cut(s) 270, 856, 1003, 1204, 1246
BspACI CCGC 4 cut(s) 896, 961, 1304, 1346
BspANI GGCC 4 cut(s) 218, 337, 400, 1129
BspFNI CGCG 2 cut(s) 1147, 1306
BspHI TCATGA 1 cut(s) 984
BspLI GGNNCC 1 cut(s) 1206
BspPI GGATC 3 cut(s) 998, 1199, 1212
BsrBI CCGCTC 1 cut(s) 963
BsrGI TGTACA 1 cut(s) 138
BsrI ACTGG 2 cut(s) 180, 723
BssECI CCNNGG 4 cut(s) 219, 395, 1109, 1200
BssMI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
BssNAI GTATAC 1 cut(s) 454
BssNI GRCGYC 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 395, 1200
Bst1107I GTATAC 1 cut(s) 454
Bst2UI CCWGG 3 cut(s) 215, 775, 1189
Bst4CI ACNGT 2 cut(s) 934, 1279
BstACI GRCGYC 1 cut(s) 435
BstAUI TGTACA 1 cut(s) 138
BstC8I GCNNGC 1 cut(s) 1162
BstDSI CCRYGG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 1334
BstF5I GGATG 4 cut(s) 559, 751, 892, 915
BstFNI CGCG 2 cut(s) 1147, 1306
BstH2I RGCGCY 1 cut(s) 288
BstHHI GCGC 2 cut(s) 287, 306
BstKTI GATC 5 cut(s) 273, 859, 1006, 1207, 1249
BstMAI GTCTC 3 cut(s) 188, 894, 1130
BstMBI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
BstNI CCWGG 3 cut(s) 215, 775, 1189
BstNSI RCATGY 2 cut(s) 1180, 1403
BstPI GGTNACC 1 cut(s) 1334
BstSCI CCNGG 4 cut(s) 213, 773, 1109, 1187
BstUI CGCG 2 cut(s) 1147, 1306
BstV1I GCAGC 3 cut(s) 737, 979, 1415
BstV2I GAAGAC 3 cut(s) 872, 1007, 1274
BstX2I RGATCY 1 cut(s) 1204
BstXI CCANNNNNNTGG 1 cut(s) 1053
BstYI RGATCY 1 cut(s) 1204
BstZ17I GTATAC 1 cut(s) 454
BsuI GTATCC 1 cut(s) 347
BsuRI GGCC 4 cut(s) 218, 337, 400, 1129
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 230
BtsCI GGATG 4 cut(s) 559, 751, 892, 915
BtsIMutI CAGTG 1 cut(s) 716
Cac8I GCNNGC 1 cut(s) 1162
CciI TCATGA 1 cut(s) 984
CfoI GCGC 2 cut(s) 287, 306
Cfr13I GGNCC 1 cut(s) 1128
CsiI ACCWGGT 1 cut(s) 1187
Csp6I GTAC 5 cut(s) 139, 482, 633, 769, 1397
CviQI GTAC 5 cut(s) 139, 482, 633, 769, 1397
DpnI GATC 5 cut(s) 272, 858, 1005, 1206, 1248
DpnII GATC 5 cut(s) 270, 856, 1003, 1204, 1246
DraIII CACNNNGTG 1 cut(s) 268
EaeI YGGCCR 1 cut(s) 398
Ecl136II GAGCTC 2 cut(s) 374, 1217
Eco130I CCWWGG 2 cut(s) 395, 1200
Eco147I AGGCCT 1 cut(s) 337
Eco24I GRGCYC 2 cut(s) 376, 1219
Eco53kI GAGCTC 2 cut(s) 374, 1217
Eco57I CTGAAG 1 cut(s) 366
Eco88I CYCGRG 1 cut(s) 1422
Eco91I GGTNACC 1 cut(s) 1334
EcoICRI GAGCTC 2 cut(s) 374, 1217
EcoO65I GGTNACC 1 cut(s) 1334
EcoRII CCWGG 3 cut(s) 213, 773, 1187
EcoT14I CCWWGG 2 cut(s) 395, 1200
EcoT38I GRGCYC 2 cut(s) 376, 1219
ErhI CCWWGG 2 cut(s) 395, 1200
Esp3I CGTCTC 1 cut(s) 894
FaqI GGGAC 1 cut(s) 216
FauNDI CATATG 1 cut(s) 1031
FbaI TGATCA 1 cut(s) 1246
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 3 cut(s) 726, 993, 1404
FokI GGATG 4 cut(s) 566, 758, 879, 902
FriOI GRGCYC 2 cut(s) 376, 1219
Fsp4HI GCNGC 3 cut(s) 726, 993, 1404
FspBI CTAG 5 cut(s) 86, 107, 441, 596, 615
GlaI GCGC 2 cut(s) 286, 305
GluI GCNGC 3 cut(s) 726, 993, 1404
HaeII RGCGCY 1 cut(s) 288
HaeIII GGCC 4 cut(s) 218, 337, 400, 1129
HapII CCGG 1 cut(s) 1111
HhaI GCGC 2 cut(s) 287, 306
Hin1I GRCGYC 1 cut(s) 435
Hin6I GCGC 2 cut(s) 285, 304
HinP1I GCGC 2 cut(s) 285, 304
HincII GTYRAC 2 cut(s) 735, 937
HindII GTYRAC 2 cut(s) 735, 937
HindIII AAGCTT 2 cut(s) 97, 118
HinfI GANTC 6 cut(s) 158, 469, 968, 1238, 1349, 1425
HpaII CCGG 1 cut(s) 1111
HphI GGTGA 5 cut(s) 533, 839, 878, 1348, 1463
Hpy166II GTNNAC 3 cut(s) 454, 735, 937
Hpy188I TCNGA 8 cut(s) 194, 275, 385, 474, 553, 643, 664, 967
Hpy188III TCNNGA 3 cut(s) 292, 985, 1293
Hpy8I GTNNAC 3 cut(s) 454, 735, 937
HpyAV CCTTC 4 cut(s) 186, 208, 1017, 1257
HpyCH4III ACNGT 2 cut(s) 934, 1279
HpyCH4IV ACGT 2 cut(s) 229, 435
HpyCH4V TGCA 4 cut(s) 995, 1021, 1403, 1443
HpySE526I ACGT 2 cut(s) 229, 435
Hsp92I GRCGYC 1 cut(s) 435
HspAI GCGC 2 cut(s) 285, 304
Ksp22I TGATCA 1 cut(s) 1246
Kzo9I GATC 5 cut(s) 270, 856, 1003, 1204, 1246
LmnI GCTCC 5 cut(s) 20, 379, 1113, 1222, 1306
Lsp1109I GCAGC 3 cut(s) 737, 979, 1415
MabI ACCWGGT 1 cut(s) 1187
MaeI CTAG 5 cut(s) 86, 107, 441, 596, 615
MaeII ACGT 2 cut(s) 229, 435
MaeIII GTNAC 8 cut(s) 436, 521, 710, 866, 1279, 1334, 1388, 1426
MalI GATC 5 cut(s) 272, 858, 1005, 1206, 1248
MbiI CCGCTC 1 cut(s) 963
MboI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
MboII GAAGA 7 cut(s) 845, 851, 872, 937, 1007, 1279, 1317
MfeI CAATTG 1 cut(s) 1051
MflI RGATCY 1 cut(s) 1204
MhlI GDGCHC 3 cut(s) 376, 1118, 1219
MlsI TGGCCA 1 cut(s) 400
MluNI TGGCCA 1 cut(s) 400
MlyI GAGTC 2 cut(s) 962, 1434
MmeI TCCRAC 3 cut(s) 531, 723, 1130
Mox20I TGGCCA 1 cut(s) 400
MscI TGGCCA 1 cut(s) 400
MseI TTAA 9 cut(s) 77, 101, 122, 257, 321, 446, 806, 975, 1121
MslI CAYNNNNRTG 2 cut(s) 569, 1092
Msp20I TGGCCA 1 cut(s) 400
MspA1I CMGCKG 1 cut(s) 1406
MspI CCGG 1 cut(s) 1111
MspR9I CCNGG 4 cut(s) 215, 775, 1111, 1189
MunI CAATTG 1 cut(s) 1051
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 3 cut(s) 215, 775, 1189
MvnI CGCG 2 cut(s) 1147, 1306
NciI CCSGG 1 cut(s) 1111
NdeI CATATG 1 cut(s) 1031
NdeII GATC 5 cut(s) 270, 856, 1003, 1204, 1246
NlaIV GGNNCC 1 cut(s) 1206
NmuCI GTSAC 5 cut(s) 436, 521, 866, 1388, 1426
NspI RCATGY 2 cut(s) 1180, 1403
PaeR7I CTCGAG 1 cut(s) 1422
PagI TCATGA 1 cut(s) 984
PceI AGGCCT 1 cut(s) 337
PciI ACATGT 1 cut(s) 1176
PcsI WCGNNNNNNNCGW 1 cut(s) 490
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 4 cut(s) 158, 469, 1238, 1349
PkrI GCNGC 3 cut(s) 727, 994, 1405
PleI GAGTC 2 cut(s) 962, 1433
PpsI GAGTC 2 cut(s) 962, 1433
PscI ACATGT 1 cut(s) 1176
Psp124BI GAGCTC 2 cut(s) 376, 1219
Psp6I CCWGG 3 cut(s) 213, 773, 1187
PspEI GGTNACC 1 cut(s) 1334
PspGI CCWGG 3 cut(s) 213, 773, 1187
PspN4I GGNNCC 1 cut(s) 1206
PspPI GGNCC 1 cut(s) 1128
PspXI VCTCGAGB 1 cut(s) 1422
PsuI RGATCY 1 cut(s) 1204
PvuII CAGCTG 1 cut(s) 1406
RsaI GTAC 5 cut(s) 140, 483, 634, 770, 1398
RsaNI GTAC 5 cut(s) 139, 482, 633, 769, 1397
RseI CAYNNNNRTG 2 cut(s) 569, 1092
SacI GAGCTC 2 cut(s) 376, 1219
SaqAI TTAA 9 cut(s) 77, 101, 122, 257, 321, 446, 806, 975, 1121
SatI GCNGC 3 cut(s) 726, 993, 1404
Sau3AI GATC 5 cut(s) 270, 856, 1003, 1204, 1246
Sau96I GGNCC 1 cut(s) 1128
SchI GAGTC 2 cut(s) 962, 1434
ScrFI CCNGG 4 cut(s) 215, 775, 1111, 1189
SduI GDGCHC 3 cut(s) 376, 1118, 1219
SexAI ACCWGGT 1 cut(s) 1187
Sfr274I CTCGAG 1 cut(s) 1422
SlaI CTCGAG 1 cut(s) 1422
SmiMI CAYNNNNRTG 2 cut(s) 569, 1092
SmlI CTYRAG 2 cut(s) 290, 1422
SmoI CTYRAG 2 cut(s) 290, 1422
SseBI AGGCCT 1 cut(s) 337
SsiI CCGC 4 cut(s) 896, 961, 1304, 1346
SspMI CTAG 5 cut(s) 86, 107, 441, 596, 615
SstI GAGCTC 2 cut(s) 376, 1219
StuI AGGCCT 1 cut(s) 337
StyD4I CCNGG 4 cut(s) 213, 773, 1109, 1187
StyI CCWWGG 2 cut(s) 395, 1200
TaaI ACNGT 2 cut(s) 934, 1279
TaiI ACGT 2 cut(s) 232, 438
TaqI TCGA 7 cut(s) 37, 349, 675, 927, 1213, 1257, 1423
TatI WGTACW 2 cut(s) 138, 1396
TfiI GAWTC 4 cut(s) 158, 469, 1238, 1349
Tru1I TTAA 9 cut(s) 77, 101, 122, 257, 321, 446, 806, 975, 1121
Tru9I TTAA 9 cut(s) 77, 101, 122, 257, 321, 446, 806, 975, 1121
TscAI CASTG 1 cut(s) 723
TseFI GTSAC 5 cut(s) 436, 521, 866, 1388, 1426
TseI GCWGC 3 cut(s) 725, 992, 1403
Tsp45I GTSAC 5 cut(s) 436, 521, 866, 1388, 1426
TspDTI ATGAA 4 cut(s) 971, 1001, 1110, 1385
TspGWI ACGGA 1 cut(s) 845
TspRI CASTG 1 cut(s) 723
XceI RCATGY 2 cut(s) 1180, 1403
XhoI CTCGAG 1 cut(s) 1422
XmiI GTMKAC 1 cut(s) 453
XspI CTAG 5 cut(s) 86, 107, 441, 596, 615
ZraI GACGTC 1 cut(s) 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.