Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Reverse (-)

4149738 .. 4151201

Gene Structure 1464 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G13080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGGGATATGATAATGGGTCGTTGTATGCTCCTTTTTTGTCGTTGAAATCTCATTCGAAACCAGAGCTGCATCAAGGCGAAGAAGAGAGCTCAAAGGTTAGATCAGAAGGTTGTTCGAAAAGCGTGGAGTCGTCGAAAAAGAAGGGGAAGAAACAAAGGTATGCGTTTCAAACAAGGAGCCAAGTGGATATTCTTGATGATGGTTATCGATGGAGGAAATATGGCCAAAAGGCCGTCAAGAACAACAAGTTCCCTAGGAGTTACTATAGGTGTACATATGGAGGATGCAATGTGAAGAAGCAAGTGCAAAGATTAACAGTGGACCAAGAAGTGGTCGTGACAACCTACGAAGGAGTGCATTCGCATCCCATCGAGAAATCCACCGAAAACTTCGAGCATATTCTCACTCAAATGCAAATCTACTCTTCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

145

Amino Acids

16.8

Weight (kDa)

9.27

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	67 - 124	7e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AcoI	YGGCCR	1 cut(s)	226
AfaI	GTAC	1 cut(s)	277
AfiI	CCNNNNNNNGG	1 cut(s)	334
AgsI	TTSAA	2 cut(s)	49, 173
AjuI	GAANNNNNNNTTGG	2 cut(s)	177, 209
AluBI	AGCT	2 cut(s)	70, 93
AluI	AGCT	2 cut(s)	70, 93
Alw21I	GWGCWC	1 cut(s)	95
AoxI	GGCC	2 cut(s)	226, 234
ApeKI	GCWGC	1 cut(s)	70
AspA2I	CCTAGG	1 cut(s)	257
AspS9I	GGNCC	1 cut(s)	325
AsuII	TTCGAA	2 cut(s)	59, 119
AvaII	GGWCC	1 cut(s)	325
AvrII	CCTAGG	1 cut(s)	257
BalI	TGGCCA	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	95
BbvI	GCAGC	1 cut(s)	57
BccI	CCATC	3 cut(s)	197, 207, 380
BceAI	ACGGC	1 cut(s)	221
BfaI	CTAG	2 cut(s)	258, 436
BfmI	CTRYAG	1 cut(s)	268
BisI	GCNGC	1 cut(s)	71
BlnI	CCTAGG	1 cut(s)	257
BlsI	GCNGC	1 cut(s)	72
Bme18I	GGWCC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	325
BmiI	GGNNCC	1 cut(s)	182
BmsI	GCATC	3 cut(s)	82, 278, 376
Bpu14I	TTCGAA	2 cut(s)	59, 119
Bsa29I	ATCGAT	1 cut(s)	211
BsaBI	GATNNNNATC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	334
Bse3DI	GCAATG	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	207
BseCI	ATCGAT	1 cut(s)	211
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	2 cut(s)	293, 367
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	334
BseMI	GCAATG	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	57
BshFI	GGCC	2 cut(s)	228, 236
BshVI	ATCGAT	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	334
BsmI	GAATGC	1 cut(s)	361
BsnI	GGCC	2 cut(s)	228, 236
Bsp119I	TTCGAA	2 cut(s)	59, 119
Bsp1286I	GDGCHC	1 cut(s)	95
Bsp1407I	TGTACA	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	104
BspANI	GGCC	2 cut(s)	228, 236
BspDI	ATCGAT	1 cut(s)	211
BspLI	GGNNCC	1 cut(s)	182
BspT104I	TTCGAA	2 cut(s)	59, 119
BsrDI	GCAATG	1 cut(s)	298
BsrGI	TGTACA	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	104
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	322
Bst6I	CTCTTC	2 cut(s)	81, 433
BstAUI	TGTACA	1 cut(s)	275
BstBI	TTCGAA	2 cut(s)	59, 119
BstF5I	GGATG	2 cut(s)	293, 367
BstKTI	GATC	1 cut(s)	107
BstMBI	GATC	1 cut(s)	104
BstSFI	CTRYAG	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	57
Bsu15I	ATCGAT	1 cut(s)	211
BsuRI	GGCC	2 cut(s)	228, 236
BsuTUI	ATCGAT	1 cut(s)	211
BtsCI	GGATG	2 cut(s)	293, 367
BtsIMutI	CAGTG	1 cut(s)	327
Cfr13I	GGNCC	1 cut(s)	325
ClaI	ATCGAT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	276
CviJI	RGCY	5 cut(s)	70, 93, 183, 228, 236
CviKI_1	RGCY	5 cut(s)	70, 93, 183, 228, 236
CviQI	GTAC	1 cut(s)	276
DpnI	GATC	1 cut(s)	106
DpnII	GATC	1 cut(s)	104
EaeI	YGGCCR	1 cut(s)	226
Eam1104I	CTCTTC	2 cut(s)	81, 433
EarI	CTCTTC	2 cut(s)	81, 433
Ecl136II	GAGCTC	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	325
Eco53kI	GAGCTC	1 cut(s)	93
EcoICRI	GAGCTC	1 cut(s)	93
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	95
ErhI	CCWWGG	1 cut(s)	257
FaiI	YATR	8 cut(s)	12, 30, 165, 225, 270, 280, 282, 402
FauNDI	CATATG	1 cut(s)	280
Fnu4HI	GCNGC	1 cut(s)	71
FokI	GGATG	2 cut(s)	300, 354
FriOI	GRGCYC	1 cut(s)	95
Fsp4HI	GCNGC	1 cut(s)	71
FspBI	CTAG	2 cut(s)	258, 436
GluI	GCNGC	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	228, 236
HinfI	GANTC	1 cut(s)	131
Hpy166II	GTNNAC	2 cut(s)	276, 325
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	4 cut(s)	197, 241, 340, 376
Hpy8I	GTNNAC	2 cut(s)	276, 325
Hpy99I	CGWCG	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	104, 139, 347
HpyCH4III	ACNGT	1 cut(s)	322
HpyCH4V	TGCA	5 cut(s)	73, 291, 310, 361, 418
Kzo9I	GATC	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	37, 180
LpnPI	CCDG	1 cut(s)	78
Lsp1109I	GCAGC	1 cut(s)	57
LweI	GCATC	3 cut(s)	82, 278, 376
MaeI	CTAG	2 cut(s)	258, 436
MaeIII	GTNAC	2 cut(s)	263, 340
MalI	GATC	1 cut(s)	106
MboI	GATC	1 cut(s)	104
MboII	GAAGA	5 cut(s)	95, 98, 163, 310, 420
MhlI	GDGCHC	1 cut(s)	95
MlsI	TGGCCA	1 cut(s)	228
MluNI	TGGCCA	1 cut(s)	228
MlyI	GAGTC	1 cut(s)	140
MnlI	CCTC	2 cut(s)	210, 278
Mox20I	TGGCCA	1 cut(s)	228
MscI	TGGCCA	1 cut(s)	228
MseI	TTAA	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	413
Msp20I	TGGCCA	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	361
NdeI	CATATG	1 cut(s)	280
NdeII	GATC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	1 cut(s)	340
NspV	TTCGAA	2 cut(s)	59, 119
PctI	GAATGC	1 cut(s)	361
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	1 cut(s)	72
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp124BI	GAGCTC	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	182
PspPI	GGNCC	1 cut(s)	325
RsaI	GTAC	1 cut(s)	277
RsaNI	GTAC	1 cut(s)	276
RseI	CAYNNNNRTG	1 cut(s)	413
SacI	GAGCTC	1 cut(s)	95
SaqAI	TTAA	1 cut(s)	317
SatI	GCNGC	1 cut(s)	71
Sau3AI	GATC	1 cut(s)	104
Sau96I	GGNCC	1 cut(s)	325
SchI	GAGTC	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	95
SetI	ASST	7 cut(s)	72, 95, 102, 115, 164, 275, 350
SfaNI	GCATC	3 cut(s)	82, 278, 376
SfcI	CTRYAG	1 cut(s)	268
SfuI	TTCGAA	2 cut(s)	59, 119
SinI	GGWCC	1 cut(s)	325
SmiMI	CAYNNNNRTG	1 cut(s)	413
SspMI	CTAG	2 cut(s)	258, 436
SstI	GAGCTC	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	1 cut(s)	322
TaqI	TCGA	6 cut(s)	59, 119, 137, 211, 375, 396
TatI	WGTACW	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	317
Tru9I	TTAA	1 cut(s)	317
TscAI	CASTG	1 cut(s)	327
TseFI	GTSAC	1 cut(s)	340
TseI	GCWGC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	340
TspRI	CASTG	1 cut(s)	327
Van91I	CCANNNNNTGG	1 cut(s)	334
VpaK11BI	GGWCC	1 cut(s)	325
XmaJI	CCTAGG	1 cut(s)	257
XspI	CTAG	2 cut(s)	258, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.