Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

54560564 .. 54562647

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39862

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAAACCTACCCAACATTTTATTCTTCTTCATCAACTACACCACCTGCTGCTGCTTCCTCTCTGTCATTGAACATGGTGAACAGTCATCCTCATCATGCTTATAGTAACGATCAGTACCAAGCTAGCAACAATAAGTCAAATGGGTTCTTGGGACTGATGTCAGAGATGGAGGTTTCGAACAGTATCAACAGCATGAGTAGTATTTCCCAGAGCATGAAAAGCTTTGGGGAGGGTGAAAGTAATACAGCAGTAAGGGCAGGGATGAAGAAGGGAGAGAAGAAGATCAGGAAGCCGAGATATGCGTTTCAGACCAGGAGCCAAGTCGATATACTTGACGATGGATACAGGTGGAGAAAGTATGGCCAAAAAGCAGTCAAGAACAACAAATTCCCAAGAAGCTACTATCGGTGCACGCATCAGGGCTGCAATGTGAAAAAGCAAGTTCAGAGACTAACCAAGGATGAAGGAGTTGTGGTGACTACATATGAAGGCATGCACTCTCATCCCATTGAGAAGTCTACCGATAACTTTGAGCATATTTTGACCCAGATGCAAATCTACACTTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

191

Amino Acids

21.68

Weight (kDa)

9.43

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	113 - 170	3.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	55
Acc36I	ACCTGC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	521
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	389
AfaI	GTAC	1 cut(s)	119
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	314
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	125, 225, 402
AluI	AGCT	3 cut(s)	125, 225, 402
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	445
Alw44I	GTGCAC	1 cut(s)	412
AoxI	GGCC	1 cut(s)	364
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	3 cut(s)	50, 53, 426
ApoI	RAATTY	1 cut(s)	389
AsuHPI	GGTGA	3 cut(s)	91, 248, 490
AsuII	TTCGAA	1 cut(s)	179
AsuNHI	GCTAGC	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	3 cut(s)	37, 40, 413
BccI	CCATC	2 cut(s)	163, 335
BciT130I	CCWGG	1 cut(s)	316
BciVI	GTATCC	1 cut(s)	338
BcoDI	GTCTC	1 cut(s)	445
BfaI	CTAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	55
BfuI	GTATCC	1 cut(s)	338
BisI	GCNGC	3 cut(s)	51, 54, 427
BlsI	GCNGC	3 cut(s)	52, 55, 428
Bme1390I	CCNGG	1 cut(s)	316
BmiI	GGNNCC	1 cut(s)	320
BmrFI	CCNGG	1 cut(s)	316
BmsI	GCATC	2 cut(s)	427, 543
BmtI	GCTAGC	1 cut(s)	129
BoxI	GACNNNNGTC	1 cut(s)	160
Bpu14I	TTCGAA	1 cut(s)	179
BsaBI	GATNNNNATC	1 cut(s)	557
BsaJI	CCNNGG	1 cut(s)	459
BsaXI	ACNNNNNCTCC	2 cut(s)	462, 492
Bse3DI	GCAATG	1 cut(s)	436
Bse8I	GATNNNNATC	1 cut(s)	557
BseBI	CCWGG	1 cut(s)	316
BseDI	CCNNGG	1 cut(s)	459
BseGI	GGATG	4 cut(s)	88, 270, 469, 505
BseJI	GATNNNNATC	1 cut(s)	557
BseMI	GCAATG	1 cut(s)	436
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	3 cut(s)	37, 40, 413
BshFI	GGCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	416
BslFI	GGGAC	1 cut(s)	168
BsmAI	GTCTC	1 cut(s)	445
BsmFI	GGGAC	1 cut(s)	168
BsnI	GGCC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	179
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	2 cut(s)	112, 285
BspANI	GGCC	1 cut(s)	366
BspLI	GGNNCC	1 cut(s)	320
BspMI	ACCTGC	1 cut(s)	55
BspOI	GCTAGC	1 cut(s)	129
BspT104I	TTCGAA	1 cut(s)	179
BsrDI	GCAATG	1 cut(s)	436
BssECI	CCNNGG	1 cut(s)	459
BssMI	GATC	2 cut(s)	112, 285
BssT1I	CCWWGG	1 cut(s)	459
Bst2UI	CCWGG	1 cut(s)	316
Bst4CI	ACNGT	2 cut(s)	86, 185
BstBI	TTCGAA	1 cut(s)	179
BstC8I	GCNNGC	3 cut(s)	127, 416, 497
BstF5I	GGATG	4 cut(s)	88, 270, 469, 505
BstKTI	GATC	2 cut(s)	115, 288
BstMAI	GTCTC	1 cut(s)	445
BstMBI	GATC	2 cut(s)	112, 285
BstMWI	GCNNNNNNNGC	2 cut(s)	222, 257
BstNI	CCWGG	1 cut(s)	316
BstNSI	RCATGY	1 cut(s)	499
BstPAI	GACNNNNGTC	1 cut(s)	160
BstSCI	CCNGG	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	37, 40, 413
BsuI	GTATCC	1 cut(s)	338
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	4 cut(s)	88, 270, 469, 505
BveI	ACCTGC	1 cut(s)	55
Cac8I	GCNNGC	3 cut(s)	127, 416, 497
Csp6I	GTAC	1 cut(s)	118
CviAII	CATG	5 cut(s)	76, 98, 196, 217, 496
CviJI	RGCY	7 cut(s)	125, 225, 295, 321, 366, 402, 426
CviKI_1	RGCY	7 cut(s)	125, 225, 295, 321, 366, 402, 426
CviQI	GTAC	1 cut(s)	118
DpnI	GATC	2 cut(s)	114, 287
DpnII	GATC	2 cut(s)	112, 285
EaeI	YGGCCR	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	459
EcoRII	CCWGG	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	459
FaeI	CATG	5 cut(s)	79, 101, 199, 220, 499
FaqI	GGGAC	1 cut(s)	168
FatI	CATG	5 cut(s)	75, 97, 195, 216, 495
FauNDI	CATATG	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	521
Fnu4HI	GCNGC	3 cut(s)	51, 54, 427
FokI	GGATG	4 cut(s)	75, 277, 476, 492
Fsp4HI	GCNGC	3 cut(s)	51, 54, 427
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	51, 54, 427
HaeIII	GGCC	1 cut(s)	366
Hin1II	CATG	5 cut(s)	79, 101, 199, 220, 499
HindIII	AAGCTT	1 cut(s)	223
HphI	GGTGA	3 cut(s)	91, 248, 490
Hpy166II	GTNNAC	3 cut(s)	82, 414, 522
Hpy188I	TCNGA	4 cut(s)	166, 312, 450, 575
Hpy188III	TCNNGA	2 cut(s)	289, 379
Hpy8I	GTNNAC	3 cut(s)	82, 414, 522
HpyAV	CCTTC	3 cut(s)	265, 461, 485
HpyCH4III	ACNGT	2 cut(s)	86, 185
HpyCH4V	TGCA	4 cut(s)	414, 429, 499, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	222, 257
Hsp92II	CATG	5 cut(s)	79, 101, 199, 220, 499
Kzo9I	GATC	2 cut(s)	112, 285
LmnI	GCTCC	1 cut(s)	318
LpnPI	CCDG	9 cut(s)	60, 224, 246, 274, 301, 328, 334, 407, 563
Lsp1109I	GCAGC	3 cut(s)	37, 40, 413
LweI	GCATC	2 cut(s)	427, 543
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	107, 478
MalI	GATC	2 cut(s)	114, 287
MboI	GATC	2 cut(s)	112, 285
MboII	GAAGA	5 cut(s)	18, 21, 280, 292, 295
MhlI	GDGCHC	1 cut(s)	416
MlsI	TGGCCA	1 cut(s)	366
MluCI	AATT	1 cut(s)	389
MluNI	TGGCCA	1 cut(s)	366
MnlI	CCTC	4 cut(s)	70, 102, 166, 226
Mox20I	TGGCCA	1 cut(s)	366
MscI	TGGCCA	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	366
MspR9I	CCNGG	1 cut(s)	316
MvaI	CCWGG	1 cut(s)	316
MwoI	GCNNNNNNNGC	2 cut(s)	222, 257
NdeI	CATATG	1 cut(s)	487
NdeII	GATC	2 cut(s)	112, 285
NheI	GCTAGC	1 cut(s)	125
NlaIII	CATG	5 cut(s)	79, 101, 199, 220, 499
NlaIV	GGNNCC	1 cut(s)	320
NmeAIII	GCCGAG	1 cut(s)	321
NmuCI	GTSAC	1 cut(s)	478
NspI	RCATGY	1 cut(s)	499
NspV	TTCGAA	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	499
PaqCI	CACCTGC	1 cut(s)	55
PkrI	GCNGC	3 cut(s)	52, 55, 428
PshAI	GACNNNNGTC	1 cut(s)	160
Psp6I	CCWGG	1 cut(s)	314
PspGI	CCWGG	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	320
RsaI	GTAC	1 cut(s)	119
RsaNI	GTAC	1 cut(s)	118
SatI	GCNGC	3 cut(s)	51, 54, 427
Sau3AI	GATC	2 cut(s)	112, 285
ScrFI	CCNGG	1 cut(s)	316
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	7 cut(s)	11, 49, 127, 177, 227, 353, 404
SfaNI	GCATC	2 cut(s)	427, 543
SfuI	TTCGAA	1 cut(s)	179
SphI	GCATGC	1 cut(s)	499
Sse9I	AATT	1 cut(s)	389
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	1 cut(s)	314
StyI	CCWWGG	1 cut(s)	459
TaaI	ACNGT	2 cut(s)	86, 185
TaqI	TCGA	2 cut(s)	179, 327
TasI	AATT	1 cut(s)	389
TseFI	GTSAC	1 cut(s)	478
TseI	GCWGC	3 cut(s)	50, 53, 426
Tsp45I	GTSAC	1 cut(s)	478
TspDTI	ATGAA	5 cut(s)	21, 233, 281, 480, 504
VneI	GTGCAC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	389
XceI	RCATGY	1 cut(s)	499
XmiI	GTMKAC	1 cut(s)	521
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.