Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Reverse (-)

8821613 .. 8823564

Gene Structure 1952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1122400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGAAAATTACCCAACATTCTTTTCTTCATCCACATCGCCTGCTCCTTCTTCCTTGTCATTGAACATGGGGAACCCAGCTCATCATGCTTACAATAGTACTGATCTTCGCCAATTCCAAAGTAGTAAATCATCGAATGGGTTCTTAGGGCTGATGTCAGAGATGGGGGCTTCAAACAATATGATTAATAACAATTTTAGTTCTCAGGGAAAAAGCGTTGGAGGATCTGGAACTATTGATATACTTGATGATGGATATAGATGGAGGAAGTATGGTCAAAAAGCAGTGAAGAACAACAAATTTCCAAGAAGCTACTACCGATGCACCCATCAGGGCTGCAATGTGAAAAAGCAAGTTCAAAGGTTAACGAAAGATGAAGGAGTCGTTGTGACAACTTATGAAGGCATGCATTCTCATCCCATCGAGAAGAGTACTGATAACTTTGAGCATATTTTGAGCCAGATGCAAATCTACACTTCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

162

Amino Acids

18.04

Weight (kDa)

9.08

Isoelectric Point (pI)

49.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	83 - 140	2.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	299
AfaI	GTAC	2 cut(s)	100, 433
AgsI	TTSAA	3 cut(s)	64, 174, 359
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	2 cut(s)	80, 312
AluI	AGCT	2 cut(s)	80, 312
AlwI	GGATC	1 cut(s)	232
ApeKI	GCWGC	1 cut(s)	336
ApoI	RAATTY	1 cut(s)	299
AseI	ATTAAT	1 cut(s)	186
Asp700I	GAANNNNTTC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	323
BccI	CCATC	5 cut(s)	157, 245, 255, 336, 428
BisI	GCNGC	1 cut(s)	337
BlsI	GCNGC	1 cut(s)	338
BmcAI	AGTACT	2 cut(s)	100, 433
BmiI	GGNNCC	1 cut(s)	74
BmsI	GCATC	2 cut(s)	311, 453
BsaBI	GATNNNNATC	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	467
BseGI	GGATG	2 cut(s)	29, 415
BseJI	GATNNNNATC	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	218
BseXI	GCAGC	1 cut(s)	323
BseYI	CCCAGC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	409
Bsp143I	GATC	2 cut(s)	103, 224
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	74
BspPI	GGATC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	346
BssMI	GATC	2 cut(s)	103, 224
Bst6I	CTCTTC	1 cut(s)	422
BstC8I	GCNNGC	2 cut(s)	42, 407
BstDEI	CTNAG	2 cut(s)	145, 204
BstF5I	GGATG	2 cut(s)	29, 415
BstKTI	GATC	2 cut(s)	106, 227
BstMBI	GATC	2 cut(s)	103, 224
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNSI	RCATGY	1 cut(s)	409
BstV1I	GCAGC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	224
BstYI	RGATCY	1 cut(s)	224
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	2 cut(s)	29, 415
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	291
Cac8I	GCNNGC	2 cut(s)	42, 407
Csp6I	GTAC	2 cut(s)	99, 432
CviAII	CATG	3 cut(s)	67, 86, 406
CviJI	RGCY	6 cut(s)	80, 151, 170, 312, 336, 459
CviKI_1	RGCY	6 cut(s)	80, 151, 170, 312, 336, 459
CviQI	GTAC	2 cut(s)	99, 432
DdeI	CTNAG	2 cut(s)	145, 204
DpnI	GATC	2 cut(s)	105, 226
DpnII	GATC	2 cut(s)	103, 224
Eam1104I	CTCTTC	1 cut(s)	422
EarI	CTCTTC	1 cut(s)	422
EcoT22I	ATGCAT	1 cut(s)	411
FaeI	CATG	3 cut(s)	70, 89, 409
FaiI	YATR	9 cut(s)	68, 87, 182, 242, 258, 273, 399, 407, 450
FatI	CATG	3 cut(s)	66, 85, 405
Fnu4HI	GCNGC	1 cut(s)	337
FokI	GGATG	2 cut(s)	16, 402
Fsp4HI	GCNGC	1 cut(s)	337
GluI	GCNGC	1 cut(s)	337
GsaI	CCCAGC	1 cut(s)	80
Hin1II	CATG	3 cut(s)	70, 89, 409
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HinfI	GANTC	1 cut(s)	381
HpaI	GTTAAC	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	366
Hpy188I	TCNGA	1 cut(s)	160
Hpy188III	TCNNGA	2 cut(s)	228, 424
Hpy8I	GTNNAC	1 cut(s)	366
HpyAV	CCTTC	3 cut(s)	57, 371, 395
HpyCH4V	TGCA	4 cut(s)	324, 339, 409, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	145, 204
Hsp92II	CATG	3 cut(s)	70, 89, 409
KspAI	GTTAAC	1 cut(s)	366
Kzo9I	GATC	2 cut(s)	103, 224
LmnI	GCTCC	1 cut(s)	49
LpnPI	CCDG	6 cut(s)	54, 90, 191, 213, 317, 473
Lsp1109I	GCAGC	1 cut(s)	323
LweI	GCATC	2 cut(s)	311, 453
MaeIII	GTNAC	1 cut(s)	388
MalI	GATC	2 cut(s)	105, 226
MboI	GATC	2 cut(s)	103, 224
MboII	GAAGA	5 cut(s)	18, 42, 98, 301, 439
MflI	RGATCY	1 cut(s)	224
MluCI	AATT	4 cut(s)	7, 113, 193, 299
MlyI	GAGTC	1 cut(s)	390
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	2 cut(s)	215, 258
Mph1103I	ATGCAT	1 cut(s)	411
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	3 cut(s)	186, 365, 484
Mva1269I	GAATGC	1 cut(s)	409
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	2 cut(s)	103, 224
NlaIII	CATG	3 cut(s)	70, 89, 409
NlaIV	GGNNCC	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	388
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	409
PaeI	GCATGC	1 cut(s)	409
PctI	GAATGC	1 cut(s)	409
PdmI	GAANNNNTTC	1 cut(s)	140
PkrI	GCNGC	1 cut(s)	338
PleI	GAGTC	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	389
PshBI	ATTAAT	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	224
RsaI	GTAC	2 cut(s)	100, 433
RsaNI	GTAC	2 cut(s)	99, 432
SaqAI	TTAA	3 cut(s)	186, 365, 484
SatI	GCNGC	1 cut(s)	337
Sau3AI	GATC	2 cut(s)	103, 224
ScaI	AGTACT	2 cut(s)	100, 433
SchI	GAGTC	1 cut(s)	390
SetI	ASST	3 cut(s)	82, 314, 365
SfaNI	GCATC	2 cut(s)	311, 453
SphI	GCATGC	1 cut(s)	409
Sse9I	AATT	4 cut(s)	7, 113, 193, 299
TaqI	TCGA	2 cut(s)	134, 423
TasI	AATT	4 cut(s)	7, 113, 193, 299
TatI	WGTACW	2 cut(s)	98, 431
Tru1I	TTAA	3 cut(s)	186, 365, 484
Tru9I	TTAA	3 cut(s)	186, 365, 484
TscAI	CASTG	1 cut(s)	291
TseFI	GTSAC	1 cut(s)	388
TseI	GCWGC	1 cut(s)	336
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	4 cut(s)	18, 390, 414, 468
TspRI	CASTG	1 cut(s)	291
VspI	ATTAAT	1 cut(s)	186
XapI	RAATTY	1 cut(s)	299
XceI	RCATGY	1 cut(s)	409
XmnI	GAANNNNTTC	1 cut(s)	140
ZrmI	AGTACT	2 cut(s)	100, 433
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.