Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Reverse (-)

60544667 .. 60546228

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000004591

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGCACAACCAAATACGTTTCTTTGGTTTATCACCATCATTAGCTTCTCCTAATTTCTCATCGAGCACTGCTTCAAGTATTCCTCAATTGTTTCCTCATGTTCATAGTAGCAATGCAGTTCCGATGGACAAATGCGGAACCTCCTATAGTTCAGTGAACAAATTGAAATCGAGAAGGAAAGACTCTGGTGACAAGGAGACCAAGAAGCACAAAATTGCGTTTCAAACAAGGAGCCAAGTCGATGTACTTGATGATGGTTATCGGTGGCGAAAATATGGGCAAAAAACTGTTAAGAACAGTAACTTTCCCAGAAGTTACTACAAGTGTACACATCAAGGGTGCAATGTGAAAAAGCAAGTCCAACGCCTTTCCAAAGATGAGGAAATTGTGGTGACTACATATGAAGGAATACACATCCATCCCACAGAGAATTCTGATGAAACCTTTGAGCATATCTTAAGCCATATGAGGAAGACAGTCAAAGATGGCATAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

167

Amino Acids

19.02

Weight (kDa)

9.58

Isoelectric Point (pI)

48.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	85 - 142	1.5e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	433
AfaI	GTAC	2 cut(s)	249, 331
AflII	CTTAAG	1 cut(s)	460
AgsI	TTSAA	3 cut(s)	78, 169, 227
AluBI	AGCT	1 cut(s)	47
AluI	AGCT	1 cut(s)	47
Alw21I	GWGCWC	2 cut(s)	9, 71
Alw26I	GTCTC	1 cut(s)	194
ApoI	RAATTY	1 cut(s)	433
AsuHPI	GGTGA	3 cut(s)	27, 203, 406
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	2 cut(s)	9, 71
BccI	CCATC	5 cut(s)	46, 121, 251, 429, 482
BcoDI	GTCTC	1 cut(s)	194
BfmI	CTRYAG	1 cut(s)	148
BfrI	CTTAAG	1 cut(s)	460
BmiI	GGNNCC	2 cut(s)	142, 236
BpiI	GAAGAC	1 cut(s)	482
BsaBI	GATNNNNATC	1 cut(s)	261
BsaI	GGTCTC	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	121, 352
Bse8I	GATNNNNATC	1 cut(s)	261
BseGI	GGATG	2 cut(s)	417, 421
BseJI	GATNNNNATC	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	121, 352
BsiHKAI	GWGCWC	2 cut(s)	9, 71
BsmAI	GTCTC	1 cut(s)	194
Bso31I	GGTCTC	1 cut(s)	194
Bsp1286I	GDGCHC	2 cut(s)	9, 71
Bsp1407I	TGTACA	1 cut(s)	329
BspACI	CCGC	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	142, 236
BspTI	CTTAAG	1 cut(s)	460
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	2 cut(s)	121, 352
BsrGI	TGTACA	1 cut(s)	329
Bst4CI	ACNGT	3 cut(s)	292, 302, 481
BstAFI	CTTAAG	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	329
BstF5I	GGATG	2 cut(s)	417, 421
BstMAI	GTCTC	1 cut(s)	194
BstSFI	CTRYAG	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	482
BtsCI	GGATG	2 cut(s)	417, 421
BtsI	GCAGTG	1 cut(s)	69
BtsIMutI	CAGTG	2 cut(s)	69, 162
Csp6I	GTAC	2 cut(s)	248, 330
CviAII	CATG	1 cut(s)	101
CviJI	RGCY	3 cut(s)	47, 237, 465
CviKI_1	RGCY	3 cut(s)	47, 237, 465
CviQI	GTAC	2 cut(s)	248, 330
Eco31I	GGTCTC	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	433
FaeI	CATG	1 cut(s)	104
FatI	CATG	1 cut(s)	100
FauNDI	CATATG	2 cut(s)	403, 468
FokI	GGATG	2 cut(s)	404, 408
Hin1II	CATG	1 cut(s)	104
HinfI	GANTC	1 cut(s)	185
HphI	GGTGA	3 cut(s)	27, 203, 406
Hpy166II	GTNNAC	3 cut(s)	160, 330, 332
Hpy188I	TCNGA	2 cut(s)	126, 439
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	3 cut(s)	160, 330, 332
HpyAV	CCTTC	2 cut(s)	171, 401
HpyCH4III	ACNGT	3 cut(s)	292, 302, 481
HpyCH4IV	ACGT	1 cut(s)	19
HpyCH4V	TGCA	2 cut(s)	119, 345
HpySE526I	ACGT	1 cut(s)	19
Hsp92II	CATG	1 cut(s)	104
LmnI	GCTCC	2 cut(s)	4, 234
LpnPI	CCDG	2 cut(s)	174, 325
MaeII	ACGT	1 cut(s)	19
MaeIII	GTNAC	4 cut(s)	191, 302, 317, 394
MboII	GAAGA	1 cut(s)	487
MfeI	CAATTG	1 cut(s)	89
MhlI	GDGCHC	2 cut(s)	9, 71
MluCI	AATT	6 cut(s)	55, 89, 164, 216, 387, 433
MlyI	GAGTC	1 cut(s)	179
MmeI	TCCRAC	1 cut(s)	388
MnlI	CCTC	5 cut(s)	96, 108, 154, 376, 465
MseI	TTAA	2 cut(s)	294, 461
MspCI	CTTAAG	1 cut(s)	460
MunI	CAATTG	1 cut(s)	89
NdeI	CATATG	2 cut(s)	403, 468
NlaIII	CATG	1 cut(s)	104
NlaIV	GGNNCC	2 cut(s)	142, 236
NmuCI	GTSAC	2 cut(s)	191, 394
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PspN4I	GGNNCC	2 cut(s)	142, 236
RsaI	GTAC	2 cut(s)	249, 331
RsaNI	GTAC	2 cut(s)	248, 330
SaqAI	TTAA	2 cut(s)	294, 461
SchI	GAGTC	1 cut(s)	179
SduI	GDGCHC	2 cut(s)	9, 71
SetI	ASST	4 cut(s)	22, 49, 146, 449
SfcI	CTRYAG	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	460
SmoI	CTYRAG	1 cut(s)	460
Sse9I	AATT	6 cut(s)	55, 89, 164, 216, 387, 433
SsiI	CCGC	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	292, 302, 481
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	3 cut(s)	65, 173, 243
TasI	AATT	6 cut(s)	55, 89, 164, 216, 387, 433
TatI	WGTACW	2 cut(s)	247, 329
Tru1I	TTAA	2 cut(s)	294, 461
Tru9I	TTAA	2 cut(s)	294, 461
TscAI	CASTG	2 cut(s)	76, 162
TseFI	GTSAC	2 cut(s)	191, 394
Tsp45I	GTSAC	2 cut(s)	191, 394
TspDTI	ATGAA	3 cut(s)	95, 420, 456
TspRI	CASTG	2 cut(s)	76, 162
Vha464I	CTTAAG	1 cut(s)	460
XapI	RAATTY	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.