Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

13576493 .. 13578196

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G148700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGAGCACAACCAAATACTTTTCCTGGCTTTACCAAAATCATCAGAGTCAGCCTCTCCTAATCTTTCATCAAACCCATCAAATATTTCTCAAGTGTTTCCTCGTTTTCACTTTGACAGCGCAGGCCTAATGAAGAAAGAAGCAAAAATTTATCAGCATTGTGGAACCTCTTATGGTTCAGTGGACAAGATGAAACCCGGCAAGAAAGAAGGTGGCAAAGAGACCAAGAAGCACAAATACGCATTTCAAACAAGGAGCCAGGTTGATATACTTGATGATGGGTACCGATGGCGAAAATACGGGCAAAAAACAGTTAAAAACAGTAAATTTCCTAGAAGCTACTATAGGTGCACGCATCAAGGGTGCATTGTCAAAAAGCAAGTCCAACGCCTTTCGAAAGATGAAGAGATTGTTGTGACGACATATGAAGGAATCCATTCACATCCCACTGATGAAACTTCCGCAGAAAACTTTGACCAGATACTGAGACATTTACAAACATATAATGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

171

Amino Acids

19.56

Weight (kDa)

9.42

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	282
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	1 cut(s)	462
AcsI	RAATTY	2 cut(s)	147, 326
AfaI	GTAC	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	2 cut(s)	24, 258
AluBI	AGCT	1 cut(s)	339
AluI	AGCT	1 cut(s)	339
Alw21I	GWGCWC	2 cut(s)	9, 353
Alw26I	GTCTC	2 cut(s)	215, 481
Alw44I	GTGCAC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	484
AoxI	GGCC	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	349
ApoI	RAATTY	2 cut(s)	147, 326
ArsI	GACNNNNNNTTYG	2 cut(s)	366, 398
Asp700I	GAANNNNTTC	1 cut(s)	436
Asp718I	GGTACC	1 cut(s)	282
AspLEI	GCGC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	198
AsuII	TTCGAA	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	282
BarI	GAAGNNNNNNTAC	2 cut(s)	221, 253
Bbv12I	GWGCWC	2 cut(s)	9, 353
BccI	CCATC	3 cut(s)	85, 272, 282
BciT130I	CCWGG	2 cut(s)	26, 260
BcnI	CCSGG	1 cut(s)	198
BcoDI	GTCTC	2 cut(s)	215, 481
BfaI	CTAG	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	343
Bme1390I	CCNGG	3 cut(s)	26, 198, 260
BmiI	GGNNCC	3 cut(s)	166, 257, 284
BmrFI	CCNGG	3 cut(s)	26, 198, 260
BmsI	GCATC	1 cut(s)	364
BplI	GAGNNNNNCTC	2 cut(s)	38, 70
Bpu14I	TTCGAA	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	26, 260
BseGI	GGATG	1 cut(s)	442
BseMII	CTCAG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	2 cut(s)	9, 353
BsiSI	CCGG	1 cut(s)	198
BsmAI	GTCTC	2 cut(s)	215, 481
BsnI	GGCC	1 cut(s)	126
Bso31I	GGTCTC	1 cut(s)	215
Bsp119I	TTCGAA	1 cut(s)	395
Bsp1286I	GDGCHC	2 cut(s)	9, 353
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	166, 257, 284
BspT104I	TTCGAA	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	282
BspTNI	GGTCTC	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	26, 260
Bst4CI	ACNGT	2 cut(s)	313, 323
Bst6I	CTCTTC	1 cut(s)	399
BstBI	TTCGAA	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	124, 353
BstDEI	CTNAG	1 cut(s)	485
BstF5I	GGATG	1 cut(s)	442
BstHHI	GCGC	1 cut(s)	122
BstMAI	GTCTC	2 cut(s)	215, 481
BstNI	CCWGG	2 cut(s)	26, 260
BstSCI	CCNGG	3 cut(s)	24, 196, 258
BstSFI	CTRYAG	1 cut(s)	343
BstSLI	GKGCMC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	2 cut(s)	186, 447
Cac8I	GCNNGC	2 cut(s)	124, 353
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	283
CviJI	RGCY	5 cut(s)	29, 53, 126, 258, 339
CviKI_1	RGCY	5 cut(s)	29, 53, 126, 258, 339
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	485
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco147I	AGGCCT	1 cut(s)	126
Eco31I	GGTCTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	24, 258
FaiI	YATR	7 cut(s)	174, 269, 345, 424, 426, 502, 504
FauNDI	CATATG	1 cut(s)	424
FokI	GGATG	1 cut(s)	429
FspBI	CTAG	1 cut(s)	333
GlaI	GCGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	1 cut(s)	198
HhaI	GCGC	1 cut(s)	122
Hin6I	GCGC	1 cut(s)	120
HinP1I	GCGC	1 cut(s)	120
HinfI	GANTC	2 cut(s)	47, 432
HpaII	CCGG	1 cut(s)	198
Hpy166II	GTNNAC	2 cut(s)	184, 351
Hpy188I	TCNGA	1 cut(s)	46
Hpy8I	GTNNAC	2 cut(s)	184, 351
HpyAV	CCTTC	2 cut(s)	203, 422
HpyCH4III	ACNGT	2 cut(s)	313, 323
HpyCH4V	TGCA	2 cut(s)	351, 366
HpyF3I	CTNAG	1 cut(s)	485
HspAI	GCGC	1 cut(s)	120
KpnI	GGTACC	1 cut(s)	286
LmnI	GCTCC	2 cut(s)	4, 255
LpnPI	CCDG	7 cut(s)	11, 38, 108, 211, 245, 272, 491
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	415
MboII	GAAGA	2 cut(s)	145, 416
MhlI	GDGCHC	2 cut(s)	9, 353
MluCI	AATT	2 cut(s)	147, 326
MlyI	GAGTC	1 cut(s)	56
MmeI	TCCRAC	1 cut(s)	409
MnlI	CCTC	3 cut(s)	64, 111, 178
MroXI	GAANNNNTTC	1 cut(s)	436
MseI	TTAA	1 cut(s)	315
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	3 cut(s)	26, 198, 260
MvaI	CCWGG	2 cut(s)	26, 260
NciI	CCSGG	1 cut(s)	198
NdeI	CATATG	1 cut(s)	424
NlaIV	GGNNCC	3 cut(s)	166, 257, 284
NmuCI	GTSAC	1 cut(s)	415
NspV	TTCGAA	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	126
PdmI	GAANNNNTTC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	432
PleI	GAGTC	1 cut(s)	55
PpsI	GAGTC	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	24, 258
PspGI	CCWGG	2 cut(s)	24, 258
PspN4I	GGNNCC	3 cut(s)	166, 257, 284
PstNI	CAGNNNCTG	1 cut(s)	484
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SaqAI	TTAA	1 cut(s)	315
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	26, 198, 260
SduI	GDGCHC	2 cut(s)	9, 353
SetI	ASST	5 cut(s)	170, 214, 264, 341, 350
SfaNI	GCATC	1 cut(s)	364
SfcI	CTRYAG	1 cut(s)	343
SfuI	TTCGAA	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	2 cut(s)	147, 326
SseBI	AGGCCT	1 cut(s)	126
SsiI	CCGC	1 cut(s)	462
SspI	AATATT	1 cut(s)	85
SspMI	CTAG	1 cut(s)	333
StuI	AGGCCT	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	24, 196, 258
TaaI	ACNGT	2 cut(s)	313, 323
TaqI	TCGA	1 cut(s)	395
TasI	AATT	2 cut(s)	147, 326
TfiI	GAWTC	1 cut(s)	432
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TscAI	CASTG	2 cut(s)	186, 454
TseFI	GTSAC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	415
TspDTI	ATGAA	6 cut(s)	57, 146, 206, 417, 441, 468
TspRI	CASTG	2 cut(s)	186, 454
VneI	GTGCAC	1 cut(s)	349
XapI	RAATTY	2 cut(s)	147, 326
XmnI	GAANNNNTTC	1 cut(s)	436
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.