Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

23707911 .. 23710210

Gene Structure 2300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G223200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAAAATTACCAAACATTTTTTTCCTCGGCAGCAACACCACCAGCTTCTTCTTCCTTGTCATTGAACATGGGGAACCCTCATGGCGCTTACAGAACTACTGATCATCTTCAATTCCAAAATAACAAGTCACCACCACCAGCAAATGGGTTCTTGGGGCTGATGTCAGATATGGAGGTTTCAAACAATATTAACTCTTCTCAGAGCAAAAGCTTTGGGGGGCCTGAAACTGCTGTGAGGTTAGGGACGAAGAAGGGAGAAAAGAAGATAAGAAAACCCAGATATGCTTTTCAAACGAGGAGCCAAGTTGATATCCTTGATGATGGATATCGATGGAGGAAGTATGGTCAAAAAGCAGTGAAGAACAACAAGTTTCCAAGAAGCTACTACCGGTGCACGCATCAGGGGTGCAATGTGAAGAAGCAAGTTCAGAGGCTAACCAAAGATGAAGGCATTGTTGTGACAACTTATGAAGGCATGCACTCTCATCCCATCGAGAAATCTACCGATAACTTTGAGCATATTTTGAGCCAGATGCAAATCTACACTTCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

186

Amino Acids

20.98

Weight (kDa)

9.64

Isoelectric Point (pI)

46.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	146
AfiI	CCNNNNNNNGG	1 cut(s)	146
AgeI	ACCGGT	1 cut(s)	390
AgsI	TTSAA	5 cut(s)	67, 113, 183, 293, 552
AluBI	AGCT	3 cut(s)	47, 213, 384
AluI	AGCT	3 cut(s)	47, 213, 384
Alw21I	GWGCWC	1 cut(s)	398
Alw44I	GTGCAC	1 cut(s)	394
AoxI	GGCC	1 cut(s)	221
ApaLI	GTGCAC	1 cut(s)	394
ApeKI	GCWGC	1 cut(s)	32
AsiGI	ACCGGT	1 cut(s)	390
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	221
AsuHPI	GGTGA	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	398
BbvI	GCAGC	1 cut(s)	44
BccI	CCATC	3 cut(s)	317, 327, 500
BclI	TGATCA	1 cut(s)	103
BfoI	RGCGCY	1 cut(s)	90
BisI	GCNGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	34
BmgT120I	GGNCC	1 cut(s)	221
BmiI	GGNNCC	3 cut(s)	77, 222, 302
BmsI	GCATC	2 cut(s)	409, 525
Bsa29I	ATCGAT	1 cut(s)	331
BsaBI	GATNNNNATC	2 cut(s)	327, 539
BsaJI	CCNNGG	1 cut(s)	27
BsaWI	WCCGGW	1 cut(s)	390
Bsc4I	CCNNNNNNNGG	1 cut(s)	146
Bse118I	RCCGGY	1 cut(s)	390
Bse3DI	GCAATG	1 cut(s)	418
Bse8I	GATNNNNATC	2 cut(s)	327, 539
BseCI	ATCGAT	1 cut(s)	331
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	1 cut(s)	487
BseJI	GATNNNNATC	2 cut(s)	327, 539
BseLI	CCNNNNNNNGG	1 cut(s)	146
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	1 cut(s)	215
BseRI	GAGGAG	1 cut(s)	313
BseSI	GKGCMC	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	44
BshFI	GGCC	1 cut(s)	223
BshTI	ACCGGT	1 cut(s)	390
BshVI	ATCGAT	1 cut(s)	331
BsiHKAI	GWGCWC	1 cut(s)	398
BsiSI	CCGG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	259
BslI	CCNNNNNNNGG	1 cut(s)	146
BsmFI	GGGAC	1 cut(s)	259
BsnI	GGCC	1 cut(s)	223
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp143I	GATC	1 cut(s)	103
BspANI	GGCC	1 cut(s)	223
BspCNI	CTCAG	1 cut(s)	214
BspDI	ATCGAT	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	77, 222, 302
BsrDI	GCAATG	1 cut(s)	418
BsrFI	RCCGGY	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	27
BssMI	GATC	1 cut(s)	103
Bst6I	CTCTTC	1 cut(s)	202
BstC8I	GCNNGC	2 cut(s)	398, 479
BstDEI	CTNAG	1 cut(s)	201
BstF5I	GGATG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	90
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	1 cut(s)	106
BstMBI	GATC	1 cut(s)	103
BstNSI	RCATGY	1 cut(s)	481
BstSLI	GKGCMC	1 cut(s)	398
BstV1I	GCAGC	1 cut(s)	44
Bsu15I	ATCGAT	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	331
BtsCI	GGATG	1 cut(s)	487
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	1 cut(s)	363
Cac8I	GCNNGC	2 cut(s)	398, 479
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	390
Cfr13I	GGNCC	1 cut(s)	221
ClaI	ATCGAT	1 cut(s)	331
CspAI	ACCGGT	1 cut(s)	390
CviAII	CATG	3 cut(s)	70, 83, 478
CviJI	RGCY	8 cut(s)	47, 160, 213, 223, 303, 384, 436, 531
CviKI_1	RGCY	8 cut(s)	47, 160, 213, 223, 303, 384, 436, 531
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	1 cut(s)	105
DpnII	GATC	1 cut(s)	103
Eam1104I	CTCTTC	1 cut(s)	202
EarI	CTCTTC	1 cut(s)	202
Eco32I	GATATC	2 cut(s)	313, 329
EcoO109I	RGGNCCY	1 cut(s)	221
EcoRV	GATATC	2 cut(s)	313, 329
FaeI	CATG	3 cut(s)	73, 86, 481
FaiI	YATR	8 cut(s)	71, 84, 173, 285, 345, 471, 479, 522
FaqI	GGGAC	1 cut(s)	259
FatI	CATG	3 cut(s)	69, 82, 477
FbaI	TGATCA	1 cut(s)	103
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	474
Fsp4HI	GCNGC	1 cut(s)	33
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	33
HaeII	RGCGCY	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	391
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	3 cut(s)	73, 86, 481
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HindIII	AAGCTT	1 cut(s)	211
HpaII	CCGG	1 cut(s)	391
HphI	GGTGA	1 cut(s)	123
Hpy166II	GTNNAC	1 cut(s)	396
Hpy188I	TCNGA	3 cut(s)	169, 204, 432
Hpy188III	TCNNGA	1 cut(s)	496
Hpy8I	GTNNAC	1 cut(s)	396
HpyAV	CCTTC	3 cut(s)	247, 443, 467
HpyCH4V	TGCA	4 cut(s)	396, 411, 481, 538
HpyF3I	CTNAG	1 cut(s)	201
Hsp92II	CATG	3 cut(s)	73, 86, 481
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	103
LmnI	GCTCC	1 cut(s)	300
LpnPI	CCDG	7 cut(s)	57, 153, 237, 292, 389, 404, 545
Lsp1109I	GCAGC	1 cut(s)	44
LweI	GCATC	2 cut(s)	409, 525
MaeIII	GTNAC	2 cut(s)	129, 460
MalI	GATC	1 cut(s)	105
MboI	GATC	1 cut(s)	103
MboII	GAAGA	8 cut(s)	42, 45, 101, 189, 262, 277, 373, 430
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	3 cut(s)	7, 113, 552
MnlI	CCTC	7 cut(s)	37, 90, 169, 231, 291, 330, 426
MseI	TTAA	2 cut(s)	192, 556
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	1 cut(s)	391
NdeII	GATC	1 cut(s)	103
NlaIII	CATG	3 cut(s)	73, 86, 481
NlaIV	GGNNCC	3 cut(s)	77, 222, 302
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	129, 460
NspI	RCATGY	1 cut(s)	481
PaeI	GCATGC	1 cut(s)	481
PflMI	CCANNNNNTGG	1 cut(s)	146
PinAI	ACCGGT	1 cut(s)	390
PkrI	GCNGC	1 cut(s)	34
PspN4I	GGNNCC	3 cut(s)	77, 222, 302
PspPI	GGNCC	1 cut(s)	221
RseI	CAYNNNNRTG	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	192, 556
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	1 cut(s)	103
Sau96I	GGNCC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	398
SetI	ASST	5 cut(s)	49, 180, 215, 242, 386
SfaNI	GCATC	2 cut(s)	409, 525
SmiMI	CAYNNNNRTG	1 cut(s)	458
SphI	GCATGC	1 cut(s)	481
Sse9I	AATT	3 cut(s)	7, 113, 552
SspI	AATATT	1 cut(s)	190
TaqI	TCGA	2 cut(s)	331, 495
TasI	AATT	3 cut(s)	7, 113, 552
Tru1I	TTAA	2 cut(s)	192, 556
Tru9I	TTAA	2 cut(s)	192, 556
TscAI	CASTG	1 cut(s)	363
TseFI	GTSAC	2 cut(s)	129, 460
TseI	GCWGC	1 cut(s)	32
Tsp45I	GTSAC	2 cut(s)	129, 460
TspDTI	ATGAA	2 cut(s)	462, 486
TspRI	CASTG	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	146
VneI	GTGCAC	1 cut(s)	394
XceI	RCATGY	1 cut(s)	481

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.