Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

40586055 .. 40588159

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0238600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGAACACGATGCACTACGCGGAGGTGAGCACCACCGGCGCCGGCGGCAAGCTCGACGAGGTCGACATCGAGTCCGGCGAGGTCTTGTACCCGGGCCTCAGCAAAGGCGAGAACCAGCTCCGTTGGGGTTTCATCCGCAAGGTCTACGGCATCTTATCCGCTCAGCTTCTTCTCACCACCGCCATCTCCTTCGTCACCGTCCTCTACACTCCCGTCAACGATCTCCTCAAGGGCAGCCCCGGCCTTCTCATGTTCTTCGCCTTCCTTCCTTTCGTCTTGTTGTGGCCCCTGCATGTTTACCAGCAAAGGCATCCCCTGAACTTTGTCTTCCTTGGACTTTTCACTGTGAGTCTCAGTGTCACTGTTGGTGTAGCGGTGGCGAATACTGATGGAGCAATAGTGCTTGAAGCATTGATTCTAACCTCTGGTGTGGTTGCATCTTTGACCGCTTACACCTTCTGGGCTTCGAAGAAGGGCAAGGACTTCAGCTTCCTTGGACCAGTCTTGTTCACTGGCCTCATGGTTCTCCTGCTAACCAGCTTCATGCAGATGTTCTTCCCTCTTGGTCCTACATCTAATGCCGTTATTGGTGGCGTGGGTGCTATTATTTTCTCTGGGTACATAGTCTATGATACCGAGAACCTCATCAAGCGGTTCACCTATGATGAGTACATCTGGGCCTCCATCACGCTTTATCTGGACATTCTGAACCTGTTCCTTACAATCCTGCGGATGCTGAGGTCGAGCGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

251

Amino Acids

27.67

Weight (kDa)

5.56

Isoelectric Point (pI)

26.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Bax1-I	PF01027	43 - 246	8.9e-50	Inhibitor of apoptosis-promoting Bax1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	2 cut(s)	63, 144
AccII	CGCG	1 cut(s)	20
AciI	CCGC	9 cut(s)	20, 45, 136, 159, 180, 374, 447, 652, 730
AcuI	CTGAAG	1 cut(s)	469
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	3 cut(s)	89, 620, 671
AgsI	TTSAA	1 cut(s)	407
AhdI	GACNNNNNGTC	1 cut(s)	70
AluBI	AGCT	5 cut(s)	52, 118, 166, 489, 540
AluI	AGCT	5 cut(s)	52, 118, 166, 489, 540
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	1 cut(s)	356
Ama87I	CYCGRG	1 cut(s)	91
AoxI	GGCC	5 cut(s)	94, 241, 284, 514, 678
ApeKI	GCWGC	1 cut(s)	234
Asp700I	GAANNNNTTC	1 cut(s)	713
AspLEI	GCGC	1 cut(s)	41
AspS9I	GGNCC	5 cut(s)	94, 285, 497, 566, 678
AsuC2I	CCSGG	3 cut(s)	92, 93, 240
AsuHPI	GGTGA	4 cut(s)	37, 166, 187, 649
AsuII	TTCGAA	1 cut(s)	467
AvaI	CYCGRG	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	497, 566
BanI	GGYRCC	1 cut(s)	38
BbsI	GAAGAC	1 cut(s)	319
Bbv12I	GWGCWC	1 cut(s)	32
BbvCI	CCTCAGC	2 cut(s)	98, 737
BbvI	GCAGC	1 cut(s)	246
BccI	CCATC	3 cut(s)	191, 383, 692
BceAI	ACGGC	2 cut(s)	163, 566
BcnI	CCSGG	3 cut(s)	92, 93, 240
BcoDI	GTCTC	1 cut(s)	356
BfoI	RGCGCY	1 cut(s)	42
BisI	GCNGC	2 cut(s)	46, 235
BlpI	GCTNAGC	1 cut(s)	162
BlsI	GCNGC	2 cut(s)	47, 236
Bme1390I	CCNGG	3 cut(s)	92, 93, 240
Bme18I	GGWCC	2 cut(s)	497, 566
BmeRI	GACNNNNNGTC	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	91
BmgT120I	GGNCC	5 cut(s)	94, 285, 497, 566, 678
BmiI	GGNNCC	2 cut(s)	40, 287
BmrFI	CCNGG	3 cut(s)	92, 93, 240
BmsI	GCATC	4 cut(s)	159, 319, 446, 723
BpiI	GAAGAC	1 cut(s)	319
Bpu10I	CCTNAGC	2 cut(s)	98, 737
Bpu1102I	GCTNAGC	1 cut(s)	162
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	212
BpuMI	CCSGG	3 cut(s)	92, 93, 240
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	91, 238, 331, 493
BsaXI	ACNNNNNCTCC	2 cut(s)	384, 414
Bse118I	RCCGGY	2 cut(s)	35, 41
Bse1I	ACTGG	2 cut(s)	500, 517
BseDI	CCNNGG	4 cut(s)	91, 238, 331, 493
BseGI	GGATG	3 cut(s)	132, 310, 738
BseMII	CTCAG	4 cut(s)	112, 176, 367, 728
BseNI	ACTGG	2 cut(s)	500, 517
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	246
Bsh1236I	CGCG	1 cut(s)	20
BshFI	GGCC	5 cut(s)	96, 243, 286, 516, 680
BshNI	GGYRCC	1 cut(s)	38
BsiHKAI	GWGCWC	1 cut(s)	32
BsiHKCI	CYCGRG	1 cut(s)	91
BsiSI	CCGG	5 cut(s)	36, 42, 75, 92, 240
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	5 cut(s)	96, 243, 286, 516, 680
BsoBI	CYCGRG	1 cut(s)	91
Bsp119I	TTCGAA	1 cut(s)	467
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	1 cut(s)	162
BspACI	CCGC	9 cut(s)	20, 45, 136, 159, 180, 374, 447, 652, 730
BspANI	GGCC	5 cut(s)	96, 243, 286, 516, 680
BspCNI	CTCAG	4 cut(s)	111, 175, 366, 729
BspFNI	CGCG	1 cut(s)	20
BspLI	GGNNCC	2 cut(s)	40, 287
BspT104I	TTCGAA	1 cut(s)	467
BspT107I	GGYRCC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	161
BsrFI	RCCGGY	2 cut(s)	35, 41
BsrI	ACTGG	2 cut(s)	500, 517
BssAI	RCCGGY	2 cut(s)	35, 41
BssECI	CCNNGG	4 cut(s)	91, 238, 331, 493
BssMI	GATC	1 cut(s)	220
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	331, 493
Bst4CI	ACNGT	3 cut(s)	199, 346, 364
BstACI	GRCGYC	1 cut(s)	39
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	2 cut(s)	43, 50
BstDEI	CTNAG	4 cut(s)	98, 162, 353, 737
BstF5I	GGATG	3 cut(s)	132, 310, 738
BstFNI	CGCG	1 cut(s)	20
BstH2I	RGCGCY	1 cut(s)	42
BstHHI	GCGC	1 cut(s)	41
BstKTI	GATC	1 cut(s)	223
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	36, 45, 240
BstNSI	RCATGY	1 cut(s)	296
BstSCI	CCNGG	3 cut(s)	90, 91, 238
BstUI	CGCG	1 cut(s)	20
BstV1I	GCAGC	1 cut(s)	246
BstV2I	GAAGAC	1 cut(s)	319
BsuRI	GGCC	5 cut(s)	96, 243, 286, 516, 680
BtsCI	GGATG	3 cut(s)	132, 310, 738
BtsIMutI	CAGTG	4 cut(s)	342, 360, 361, 510
Cac8I	GCNNGC	2 cut(s)	43, 50
CfoI	GCGC	1 cut(s)	41
Cfr10I	RCCGGY	2 cut(s)	35, 41
Cfr13I	GGNCC	5 cut(s)	94, 285, 497, 566, 678
Cfr9I	CCCGGG	1 cut(s)	91
Csp6I	GTAC	3 cut(s)	88, 619, 670
CviAII	CATG	4 cut(s)	250, 293, 520, 544
CviQI	GTAC	3 cut(s)	88, 619, 670
DdeI	CTNAG	4 cut(s)	98, 162, 353, 737
DinI	GGCGCC	1 cut(s)	40
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
DriI	GACNNNNNGTC	1 cut(s)	70
Eam1105I	GACNNNNNGTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	331, 493
Eco47I	GGWCC	2 cut(s)	497, 566
Eco57I	CTGAAG	1 cut(s)	469
Eco88I	CYCGRG	1 cut(s)	91
EcoT14I	CCWWGG	2 cut(s)	331, 493
EgeI	GGCGCC	1 cut(s)	40
EheI	GGCGCC	1 cut(s)	40
ErhI	CCWWGG	2 cut(s)	331, 493
FaeI	CATG	4 cut(s)	253, 296, 523, 547
FaiI	YATR	7 cut(s)	251, 294, 521, 545, 623, 630, 663
FatI	CATG	4 cut(s)	249, 292, 519, 543
FblI	GTMKAC	2 cut(s)	63, 144
Fnu4HI	GCNGC	2 cut(s)	46, 235
FokI	GGATG	3 cut(s)	119, 297, 745
Fsp4HI	GCNGC	2 cut(s)	46, 235
GlaI	GCGC	1 cut(s)	40
GluI	GCNGC	2 cut(s)	46, 235
HaeII	RGCGCY	1 cut(s)	42
HaeIII	GGCC	5 cut(s)	96, 243, 286, 516, 680
HapII	CCGG	5 cut(s)	36, 42, 75, 92, 240
HhaI	GCGC	1 cut(s)	41
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	4 cut(s)	253, 296, 523, 547
Hin6I	GCGC	1 cut(s)	39
HinP1I	GCGC	1 cut(s)	39
HincII	GTYRAC	2 cut(s)	64, 217
HindII	GTYRAC	2 cut(s)	64, 217
HinfI	GANTC	3 cut(s)	71, 349, 415
HpaII	CCGG	5 cut(s)	36, 42, 75, 92, 240
HphI	GGTGA	4 cut(s)	37, 166, 187, 649
Hpy166II	GTNNAC	6 cut(s)	64, 145, 217, 298, 510, 657
Hpy188I	TCNGA	1 cut(s)	708
Hpy188III	TCNNGA	1 cut(s)	698
Hpy8I	GTNNAC	6 cut(s)	64, 145, 217, 298, 510, 657
Hpy99I	CGWCG	1 cut(s)	59
HpyAV	CCTTC	6 cut(s)	199, 254, 271, 275, 466, 466
HpyCH4III	ACNGT	3 cut(s)	199, 346, 364
HpyCH4V	TGCA	4 cut(s)	13, 292, 437, 547
HpyF10VI	GCNNNNNNNGC	3 cut(s)	36, 45, 240
HpyF3I	CTNAG	4 cut(s)	98, 162, 353, 737
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	4 cut(s)	253, 296, 523, 547
HspAI	GCGC	1 cut(s)	39
KasI	GGCGCC	1 cut(s)	38
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
Kzo9I	GATC	1 cut(s)	220
LmnI	GCTCC	2 cut(s)	123, 392
Lsp1109I	GCAGC	1 cut(s)	246
LweI	GCATC	4 cut(s)	159, 319, 446, 723
MaeIII	GTNAC	2 cut(s)	193, 358
MalI	GATC	1 cut(s)	222
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	1 cut(s)	220
MboII	GAAGA	5 cut(s)	161, 247, 319, 481, 547
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	1 cut(s)	751
Mly113I	GGCGCC	1 cut(s)	39
MlyI	GAGTC	2 cut(s)	80, 358
MreI	CGCCGGCG	1 cut(s)	41
MroNI	GCCGGC	1 cut(s)	41
MroXI	GAANNNNTTC	1 cut(s)	713
MslI	CAYNNNNRTG	1 cut(s)	548
MspI	CCGG	5 cut(s)	36, 42, 75, 92, 240
MspR9I	CCNGG	3 cut(s)	92, 93, 240
MvnI	CGCG	1 cut(s)	20
MwoI	GCNNNNNNNGC	3 cut(s)	36, 45, 240
NaeI	GCCGGC	1 cut(s)	43
NarI	GGCGCC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	92, 93, 240
NdeII	GATC	1 cut(s)	220
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	4 cut(s)	253, 296, 523, 547
NlaIV	GGNNCC	2 cut(s)	40, 287
NmuCI	GTSAC	2 cut(s)	193, 358
NspI	RCATGY	1 cut(s)	296
NspV	TTCGAA	1 cut(s)	467
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 75
PdiI	GCCGGC	1 cut(s)	43
PdmI	GAANNNNTTC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	415
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	2 cut(s)	47, 236
PleI	GAGTC	2 cut(s)	79, 357
PluTI	GGCGCC	1 cut(s)	42
PpsI	GAGTC	2 cut(s)	79, 357
PspN4I	GGNNCC	2 cut(s)	40, 287
PspPI	GGNCC	5 cut(s)	94, 285, 497, 566, 678
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	3 cut(s)	89, 620, 671
RsaNI	GTAC	3 cut(s)	88, 619, 670
RseI	CAYNNNNRTG	1 cut(s)	548
SalI	GTCGAC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	46, 235
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	5 cut(s)	94, 285, 497, 566, 678
SchI	GAGTC	2 cut(s)	80, 358
ScrFI	CCNGG	3 cut(s)	92, 93, 240
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	4 cut(s)	159, 319, 446, 723
SfoI	GGCGCC	1 cut(s)	40
SfuI	TTCGAA	1 cut(s)	467
SgrAI	CRCCGGYG	2 cut(s)	35, 41
SinI	GGWCC	2 cut(s)	497, 566
SmaI	CCCGGG	1 cut(s)	93
SmiMI	CAYNNNNRTG	1 cut(s)	548
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	751
SsiI	CCGC	9 cut(s)	20, 45, 136, 159, 180, 374, 447, 652, 730
SspDI	GGCGCC	1 cut(s)	38
StyD4I	CCNGG	3 cut(s)	90, 91, 238
StyI	CCWWGG	2 cut(s)	331, 493
TaaI	ACNGT	3 cut(s)	199, 346, 364
TaqI	TCGA	5 cut(s)	54, 63, 69, 467, 743
TasI	AATT	1 cut(s)	751
TatI	WGTACW	1 cut(s)	669
TauI	GCSGC	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	415
TscAI	CASTG	4 cut(s)	349, 361, 367, 517
TseFI	GTSAC	2 cut(s)	193, 358
TseI	GCWGC	1 cut(s)	234
Tsp45I	GTSAC	2 cut(s)	193, 358
TspDTI	ATGAA	3 cut(s)	17, 121, 532
TspGWI	ACGGA	1 cut(s)	110
TspMI	CCCGGG	1 cut(s)	91
TspRI	CASTG	4 cut(s)	349, 361, 367, 517
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	497, 566
XceI	RCATGY	1 cut(s)	296
XmaI	CCCGGG	1 cut(s)	91
XmiI	GTMKAC	2 cut(s)	63, 144
XmnI	GAANNNNTTC	1 cut(s)	713

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.