Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

15904169 .. 15904946

Gene Structure 778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g12860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATCAAAATAACCAAATATTCTTCCTCGGTTCATCAGCAACCTCACCAGCTTTTCTTACTTGTTCATCGAACCAGTCAAGCTTTCCTCATTTTCTCAGTGACAGAAGTGCAGGCCAGATGAAGTCAGGAAGAAAAGAAGGTGACAAAGAGAGCGAGAAGCACAAATATGCATTTCAAACAAGGAGCCAGGTTGATATACTTGATGACGGGTACCGGTGGCGAAAATACGGGCAAAAATTTGTTAAAAACAACAAATTTCCTAGAAGTTACTATAGGTGTACACATCAAGGATGCATCGTCAAGAAACAAGTCCAACGCCTTTCCAAAGACGAGGGGATTGTGGTAACAACATACGATGGAATCCATACGCATCGGGTTGATGAGAATTCTGCTGGAAATTTTGAGGAGGTACTAAGGCATATACAAGCATGTAATGTGCCTAATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

151

Amino Acids

17.2

Weight (kDa)

9.21

Isoelectric Point (pI)

49.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	69 - 125	1.4e-26	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	4 cut(s)	239, 257, 388, 400
AfaI	GTAC	3 cut(s)	215, 283, 414
AgeI	ACCGGT	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	2 cut(s)	53, 84
AluI	AGCT	2 cut(s)	53, 84
AlwI	GGATC	1 cut(s)	12
AoxI	GGCC	1 cut(s)	115
ApoI	RAATTY	4 cut(s)	239, 257, 388, 400
AsiGI	ACCGGT	1 cut(s)	216
Asp718I	GGTACC	1 cut(s)	213
AsuHPI	GGTGA	2 cut(s)	39, 155
BanI	GGYRCC	1 cut(s)	213
BccI	CCATC	1 cut(s)	353
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	264
BfmI	CTRYAG	1 cut(s)	274
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	2 cut(s)	188, 215
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	3 cut(s)	284, 306, 382
BsaJI	CCNNGG	1 cut(s)	28
BsaWI	WCCGGW	1 cut(s)	216
Bse118I	RCCGGY	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	299
BseMII	CTCAG	1 cut(s)	112
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	422
BsgI	GTGCAG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	117
BshNI	GGYRCC	1 cut(s)	213
BshTI	ACCGGT	1 cut(s)	216
BsiSI	CCGG	1 cut(s)	217
BsnI	GGCC	1 cut(s)	117
Bsp1407I	TGTACA	1 cut(s)	281
Bsp143I	GATC	1 cut(s)	4
BspANI	GGCC	1 cut(s)	117
BspCNI	CTCAG	1 cut(s)	111
BspLI	GGNNCC	2 cut(s)	188, 215
BspPI	GGATC	1 cut(s)	12
BspT107I	GGYRCC	1 cut(s)	213
BsrFI	RCCGGY	1 cut(s)	216
BsrGI	TGTACA	1 cut(s)	281
BsrI	ACTGG	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	216
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	4
Bst2UI	CCWGG	1 cut(s)	191
BstAUI	TGTACA	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	98, 416
BstF5I	GGATG	1 cut(s)	299
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	191
BstNSI	RCATGY	1 cut(s)	435
BstSCI	CCNGG	1 cut(s)	189
BstSFI	CTRYAG	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	117
BtsCI	GGATG	1 cut(s)	299
BtsIMutI	CAGTG	1 cut(s)	106
Cac8I	GCNNGC	1 cut(s)	115
Cfr10I	RCCGGY	1 cut(s)	216
Csp6I	GTAC	3 cut(s)	214, 282, 413
CspAI	ACCGGT	1 cut(s)	216
CviAII	CATG	1 cut(s)	432
CviJI	RGCY	4 cut(s)	53, 84, 117, 189
CviKI_1	RGCY	4 cut(s)	53, 84, 117, 189
CviQI	GTAC	3 cut(s)	214, 282, 413
DdeI	CTNAG	2 cut(s)	98, 416
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
EcoRI	GAATTC	1 cut(s)	388
EcoRII	CCWGG	1 cut(s)	189
EcoT22I	ATGCAT	2 cut(s)	175, 299
FaeI	CATG	1 cut(s)	435
FaiI	YATR	8 cut(s)	171, 200, 276, 355, 369, 423, 425, 433
FatI	CATG	1 cut(s)	431
FokI	GGATG	1 cut(s)	306
FspBI	CTAG	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	117
HapII	CCGG	1 cut(s)	217
Hin1II	CATG	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	217
HphI	GGTGA	2 cut(s)	39, 155
Hpy166II	GTNNAC	2 cut(s)	282, 284
Hpy188III	TCNNGA	2 cut(s)	129, 304
Hpy8I	GTNNAC	2 cut(s)	282, 284
HpyAV	CCTTC	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	113, 173, 297
HpyF3I	CTNAG	2 cut(s)	98, 416
Hsp92II	CATG	1 cut(s)	435
KpnI	GGTACC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	9 cut(s)	63, 89, 99, 114, 131, 176, 203, 230, 381
LweI	GCATC	3 cut(s)	284, 306, 382
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	4 cut(s)	101, 143, 269, 346
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	16, 144
MluCI	AATT	4 cut(s)	239, 257, 388, 400
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	6 cut(s)	38, 55, 99, 328, 400, 403
Mph1103I	ATGCAT	2 cut(s)	175, 299
MseI	TTAA	2 cut(s)	246, 451
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	1 cut(s)	217
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	2 cut(s)	188, 215
NmuCI	GTSAC	2 cut(s)	101, 143
NsiI	ATGCAT	2 cut(s)	175, 299
NspI	RCATGY	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	363
PinAI	ACCGGT	1 cut(s)	216
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	2 cut(s)	188, 215
RsaI	GTAC	3 cut(s)	215, 283, 414
RsaNI	GTAC	3 cut(s)	214, 282, 413
RseI	CAYNNNNRTG	1 cut(s)	168
SaqAI	TTAA	2 cut(s)	246, 451
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	7 cut(s)	47, 55, 86, 145, 195, 281, 414
SfaNI	GCATC	3 cut(s)	284, 306, 382
SfcI	CTRYAG	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	4 cut(s)	239, 257, 388, 400
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	189
TaqI	TCGA	1 cut(s)	71
TasI	AATT	4 cut(s)	239, 257, 388, 400
TatI	WGTACW	1 cut(s)	281
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	2 cut(s)	246, 451
Tru9I	TTAA	2 cut(s)	246, 451
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	2 cut(s)	101, 143
Tsp45I	GTSAC	2 cut(s)	101, 143
TspDTI	ATGAA	3 cut(s)	24, 57, 137
TspRI	CASTG	1 cut(s)	106
XapI	RAATTY	4 cut(s)	239, 257, 388, 400
XceI	RCATGY	1 cut(s)	435
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	2 cut(s)	175, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.