Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

18072900 .. 18073693

Gene Structure 794 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12970.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGATCACAACAGCCAAATATTCTTCCTTGGTTCATCAGCATCCTCATCAGCATCTCCTATTTTTTCATCGAGTCAGTCAAGTTTTCCACTTTGTCTTGGTGACAGAAATGCAGGCATGATGAAGTCAGGAAGAAAAGAAGGTGATAAGGTGAACAAGAAGCAGAAATATGCATTTCAAACAAGGAGCCAGGTTGATATACTTGACGACGGCTACCGATGGCGAAAATACGGGCAAAAAGTTGTTAAGAACAATAAGTTTCCTAGAAGTTACTATAAGTGTACGCATCAAGGCTGCATGGTGAAGAAACAAGTCCAACGCCTGTCGAAGGACGAAGGGATTGTGGTAACGACATACGATGGAATCCATACGCATCGGATTGATGAGTATTCTGCCGAAAATCTTGAGCAGATAATTAGGCATATACAAGCATCTACTGTGCCTAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

151

Amino Acids

17.1

Weight (kDa)

9.56

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AfaI	GTAC	1 cut(s)	283
AfiI	CCNNNNNNNGG	1 cut(s)	328
AgsI	TTSAA	1 cut(s)	179
AjnI	CCWGG	1 cut(s)	189
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	294
AsuHPI	GGTGA	4 cut(s)	113, 155, 163, 313
BbvI	GCAGC	1 cut(s)	281
BccI	CCATC	2 cut(s)	213, 353
BceAI	ACGGC	1 cut(s)	226
BciT130I	CCWGG	1 cut(s)	191
BfaI	CTAG	1 cut(s)	264
BisI	GCNGC	1 cut(s)	295
BlsI	GCNGC	1 cut(s)	296
Bme1390I	CCNGG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	191
BmsI	GCATC	5 cut(s)	50, 62, 295, 382, 440
BpuEI	CTTGAG	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	28
Bsc4I	CCNNNNNNNGG	1 cut(s)	328
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	28
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	1 cut(s)	328
BseXI	GCAGC	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	328
Bsp143I	GATC	1 cut(s)	4
BspLI	GGNNCC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	4
BssT1I	CCWWGG	1 cut(s)	28
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	439
BstC8I	GCNNGC	1 cut(s)	115
BstENI	CCTNNNNNAGG	1 cut(s)	326
BstF5I	GGATG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	41
Cac8I	GCNNGC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	282
CviAII	CATG	2 cut(s)	118, 298
CviJI	RGCY	4 cut(s)	15, 189, 213, 294
CviKI_1	RGCY	4 cut(s)	15, 189, 213, 294
CviQI	GTAC	1 cut(s)	282
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eco130I	CCWWGG	1 cut(s)	28
EcoNI	CCTNNNNNAGG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	189
EcoT14I	CCWWGG	1 cut(s)	28
EcoT22I	ATGCAT	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	28
FaeI	CATG	2 cut(s)	121, 301
FaiI	YATR	9 cut(s)	119, 171, 200, 276, 299, 355, 369, 423, 425
FatI	CATG	2 cut(s)	117, 297
Fnu4HI	GCNGC	1 cut(s)	295
FokI	GGATG	1 cut(s)	28
Fsp4HI	GCNGC	1 cut(s)	295
FspBI	CTAG	1 cut(s)	264
GluI	GCNGC	1 cut(s)	295
Hin1II	CATG	2 cut(s)	121, 301
HinfI	GANTC	2 cut(s)	73, 363
HphI	GGTGA	4 cut(s)	113, 155, 163, 313
Hpy166II	GTNNAC	2 cut(s)	154, 282
Hpy188I	TCNGA	1 cut(s)	378
Hpy188III	TCNNGA	2 cut(s)	129, 404
Hpy8I	GTNNAC	2 cut(s)	154, 282
Hpy99I	CGWCG	1 cut(s)	212
HpyAV	CCTTC	3 cut(s)	134, 322, 329
HpyCH4III	ACNGT	1 cut(s)	439
HpyCH4V	TGCA	3 cut(s)	113, 173, 297
Hsp92II	CATG	2 cut(s)	121, 301
Kzo9I	GATC	1 cut(s)	4
LmnI	GCTCC	1 cut(s)	186
LpnPI	CCDG	5 cut(s)	99, 114, 176, 203, 335
Lsp1109I	GCAGC	1 cut(s)	281
LweI	GCATC	5 cut(s)	50, 62, 295, 382, 440
MaeI	CTAG	1 cut(s)	264
MaeIII	GTNAC	3 cut(s)	101, 269, 346
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	16, 144, 316
MluCI	AATT	2 cut(s)	414, 448
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	1 cut(s)	55
Mph1103I	ATGCAT	1 cut(s)	175
MseI	TTAA	2 cut(s)	246, 451
MspR9I	CCNGG	1 cut(s)	191
MvaI	CCWGG	1 cut(s)	191
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	2 cut(s)	121, 301
NlaIV	GGNNCC	1 cut(s)	188
NmuCI	GTSAC	1 cut(s)	101
NsiI	ATGCAT	1 cut(s)	175
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	1 cut(s)	296
PleI	GAGTC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	81
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	188
RsaI	GTAC	1 cut(s)	283
RsaNI	GTAC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	246, 451
SatI	GCNGC	1 cut(s)	295
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	191
SetI	ASST	3 cut(s)	145, 153, 195
SfaNI	GCATC	5 cut(s)	50, 62, 295, 382, 440
SmlI	CTYRAG	1 cut(s)	404
SmoI	CTYRAG	1 cut(s)	404
Sse9I	AATT	2 cut(s)	414, 448
SspI	AATATT	1 cut(s)	21
SspMI	CTAG	1 cut(s)	264
StyD4I	CCNGG	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	28
TaaI	ACNGT	1 cut(s)	439
TaqI	TCGA	2 cut(s)	71, 326
TasI	AATT	2 cut(s)	414, 448
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	2 cut(s)	246, 451
Tru9I	TTAA	2 cut(s)	246, 451
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	1 cut(s)	294
Tsp45I	GTSAC	1 cut(s)	101
TspDTI	ATGAA	3 cut(s)	24, 57, 137
XagI	CCTNNNNNAGG	1 cut(s)	326
XspI	CTAG	1 cut(s)	264
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.