Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004303

Physical Location & Seq

Genomic Coordinates Forward (+)

25942612 .. 25944696

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGATACCTACCCAACATTCTATTCTTCTTCATCAACGCCACCTTCTGCTGCTGCTTCTTCGCTGTCATTGAACATGGTGAACACTCATCCTCATCATGCTTACAGTAACGATCATCAGTACCAAGCTAGCAACAACAAGGCAAATGGGTTCTTGGGGCTGATGTCAGAGATGGAGGTTTCGAACAGCATGAGTAGTATTACCCAGCAGAGCATGAAAAGCTTTGGGGAGGGTGAAAGTAATACAGCAGTAAGATTAGGGATGAAGAAGGGAGACAAGAAGATCAGGAAGCCGAGATATGCGTTTCAGACCAGGAGCCAAGTCGATATACTTGACGATGGATACAGGTGGAGAAAGTATGGCCAAAAAGCAGTCAAGAACAACAAGTTCCCAAGAAGCTACTATCGGTGCACGCATCAGGGTTGCAATGTGAAGAAGCAAGTTCAGAGACTAACCAGGGATGAAGGAGTTGTGGTGACTACATATGAAGGCATGCATTCTCATCCCATTGAGAAGTCTACCGATAACTTCGAGCATATTTTGACCCAGATGCAAATCTACACTTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010015 GO:0010053 GO:0010055 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022622 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0033554 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043620 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048519 GO:0048523 GO:0048527 GO:0048528 GO:0048583 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0060255 GO:0065007 GO:0080090 GO:0090558 GO:0090627 GO:0090696 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1990837 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

191

Amino Acids

21.67

Weight (kDa)

9.45

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	112 - 169	3.7e-27	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004303)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13080
fragaria_vesca	FvH4_4g23480 FvH4_5g08610
malus_domestica	MD06G1138500.v1.1 MD13G1122100.v1.1 MD14G1154500.v1.1 MD16G1122400.v1.1
prunus_persica	Prupe.1G223200_v2.0.a1 Prupe.5G148700_v2.0.a1 Prupe.5G148700_v2.0.a1
pyrus_communis	pycom06g12970 pycom13g10630 pycom14g12860 pycom16g10490
rosa_chinensis	RchiOBHm_Chr4g0429851 RchiOBHm_Chr7g0189781
rosa_laevigata	RLG00000004591 RLG00000007038
rosa_multiflora	Rmu_sc0002225.1_g000001
rosa_roxburghii	Rroxscaffold_3G00265170 Rroxscaffold_5G00371610
rosa_rugosa	Rorug04G0238600 Rorug06G0499800
rosa_samantha	Rh4AG295000 Rh4BG301400 Rh4CG316600 Rh4DG298300 Rh7AG104900 Rh7CG109500 Rh7DG107900
rosa_wichuraiana	Rw4G025530 Rw7G009080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	518
AcoI	YGGCCR	1 cut(s)	361
AfaI	GTAC	1 cut(s)	122
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	2 cut(s)	311, 455
AjuI	GAANNNNNNNTTGG	2 cut(s)	7, 39
AluBI	AGCT	3 cut(s)	128, 222, 399
AluI	AGCT	3 cut(s)	128, 222, 399
Alw21I	GWGCWC	1 cut(s)	413
Alw26I	GTCTC	2 cut(s)	267, 442
Alw44I	GTGCAC	1 cut(s)	409
AoxI	GGCC	1 cut(s)	361
ApaLI	GTGCAC	1 cut(s)	409
ApeKI	GCWGC	2 cut(s)	50, 53
AsuHPI	GGTGA	3 cut(s)	91, 245, 487
AsuII	TTCGAA	1 cut(s)	182
AsuNHI	GCTAGC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	413
BalI	TGGCCA	1 cut(s)	363
Bbv12I	GWGCWC	1 cut(s)	413
BbvI	GCAGC	2 cut(s)	37, 40
BccI	CCATC	2 cut(s)	166, 332
BciT130I	CCWGG	2 cut(s)	313, 457
BciVI	GTATCC	1 cut(s)	335
BcoDI	GTCTC	2 cut(s)	267, 442
BfaI	CTAG	1 cut(s)	129
BfuI	GTATCC	1 cut(s)	335
BisI	GCNGC	2 cut(s)	51, 54
BlsI	GCNGC	2 cut(s)	52, 55
Bme1390I	CCNGG	2 cut(s)	313, 457
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	2 cut(s)	313, 457
BmsI	GCATC	2 cut(s)	424, 540
BmtI	GCTAGC	1 cut(s)	132
Bpu14I	TTCGAA	1 cut(s)	182
BsaBI	GATNNNNATC	1 cut(s)	554
BsaJI	CCNNGG	1 cut(s)	456
BsaXI	ACNNNNNCTCC	2 cut(s)	459, 489
Bse3DI	GCAATG	1 cut(s)	433
Bse8I	GATNNNNATC	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	313, 457
BseDI	CCNNGG	1 cut(s)	456
BseGI	GGATG	4 cut(s)	88, 267, 466, 502
BseJI	GATNNNNATC	1 cut(s)	554
BseMI	GCAATG	1 cut(s)	433
BseSI	GKGCMC	1 cut(s)	413
BseXI	GCAGC	2 cut(s)	37, 40
BseYI	CCCAGC	1 cut(s)	204
BshFI	GGCC	1 cut(s)	363
BsiHKAI	GWGCWC	1 cut(s)	413
BsmAI	GTCTC	2 cut(s)	267, 442
BsmI	GAATGC	1 cut(s)	496
BsnI	GGCC	1 cut(s)	363
Bsp119I	TTCGAA	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp143I	GATC	2 cut(s)	112, 282
BspANI	GGCC	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	317
BspOI	GCTAGC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	182
BsrDI	GCAATG	1 cut(s)	433
BssECI	CCNNGG	1 cut(s)	456
BssMI	GATC	2 cut(s)	112, 282
Bst2UI	CCWGG	2 cut(s)	313, 457
Bst4CI	ACNGT	1 cut(s)	107
BstBI	TTCGAA	1 cut(s)	182
BstC8I	GCNNGC	3 cut(s)	130, 413, 494
BstF5I	GGATG	4 cut(s)	88, 267, 466, 502
BstKTI	GATC	2 cut(s)	115, 285
BstMAI	GTCTC	2 cut(s)	267, 442
BstMBI	GATC	2 cut(s)	112, 282
BstMWI	GCNNNNNNNGC	1 cut(s)	219
BstNI	CCWGG	2 cut(s)	313, 457
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	2 cut(s)	311, 455
BstSLI	GKGCMC	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	37, 40
BsuI	GTATCC	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	4 cut(s)	88, 267, 466, 502
Cac8I	GCNNGC	3 cut(s)	130, 413, 494
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	5 cut(s)	76, 98, 190, 214, 493
CviJI	RGCY	7 cut(s)	128, 160, 222, 292, 318, 363, 399
CviKI_1	RGCY	7 cut(s)	128, 160, 222, 292, 318, 363, 399
CviQI	GTAC	1 cut(s)	121
DpnI	GATC	2 cut(s)	114, 284
DpnII	GATC	2 cut(s)	112, 282
EaeI	YGGCCR	1 cut(s)	361
EcoRII	CCWGG	2 cut(s)	311, 455
EcoT22I	ATGCAT	1 cut(s)	498
FaeI	CATG	5 cut(s)	79, 101, 193, 217, 496
FatI	CATG	5 cut(s)	75, 97, 189, 213, 492
FauNDI	CATATG	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	518
Fnu4HI	GCNGC	2 cut(s)	51, 54
FokI	GGATG	4 cut(s)	75, 274, 473, 489
Fsp4HI	GCNGC	2 cut(s)	51, 54
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	2 cut(s)	51, 54
GsaI	CCCAGC	1 cut(s)	208
HaeIII	GGCC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	79, 101, 193, 217, 496
HindIII	AAGCTT	1 cut(s)	220
HphI	GGTGA	3 cut(s)	91, 245, 487
Hpy166II	GTNNAC	3 cut(s)	82, 411, 519
Hpy188I	TCNGA	4 cut(s)	169, 309, 447, 572
Hpy188III	TCNNGA	2 cut(s)	286, 376
Hpy8I	GTNNAC	3 cut(s)	82, 411, 519
HpyAV	CCTTC	4 cut(s)	54, 262, 458, 482
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	4 cut(s)	411, 426, 496, 553
HpyF10VI	GCNNNNNNNGC	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	79, 101, 193, 217, 496
Kzo9I	GATC	2 cut(s)	112, 282
LmnI	GCTCC	1 cut(s)	315
LpnPI	CCDG	9 cut(s)	218, 271, 298, 325, 331, 404, 442, 469, 560
Lsp1109I	GCAGC	2 cut(s)	37, 40
LweI	GCATC	2 cut(s)	424, 540
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	2 cut(s)	107, 475
MalI	GATC	2 cut(s)	114, 284
MboI	GATC	2 cut(s)	112, 282
MboII	GAAGA	6 cut(s)	18, 21, 51, 277, 292, 445
MhlI	GDGCHC	1 cut(s)	413
MlsI	TGGCCA	1 cut(s)	363
MluNI	TGGCCA	1 cut(s)	363
MnlI	CCTC	3 cut(s)	102, 169, 223
Mox20I	TGGCCA	1 cut(s)	363
Mph1103I	ATGCAT	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	363
Msp20I	TGGCCA	1 cut(s)	363
MspR9I	CCNGG	2 cut(s)	313, 457
Mva1269I	GAATGC	1 cut(s)	496
MvaI	CCWGG	2 cut(s)	313, 457
MwoI	GCNNNNNNNGC	1 cut(s)	219
NdeI	CATATG	1 cut(s)	484
NdeII	GATC	2 cut(s)	112, 282
NheI	GCTAGC	1 cut(s)	128
NlaIII	CATG	5 cut(s)	79, 101, 193, 217, 496
NlaIV	GGNNCC	1 cut(s)	317
NmeAIII	GCCGAG	1 cut(s)	318
NmuCI	GTSAC	1 cut(s)	475
NsiI	ATGCAT	1 cut(s)	498
NspI	RCATGY	1 cut(s)	496
NspV	TTCGAA	1 cut(s)	182
PaeI	GCATGC	1 cut(s)	496
PctI	GAATGC	1 cut(s)	496
PkrI	GCNGC	2 cut(s)	52, 55
Psp6I	CCWGG	2 cut(s)	311, 455
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	311, 455
PspN4I	GGNNCC	1 cut(s)	317
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SatI	GCNGC	2 cut(s)	51, 54
Sau3AI	GATC	2 cut(s)	112, 282
ScrFI	CCNGG	2 cut(s)	313, 457
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	7 cut(s)	11, 46, 130, 180, 224, 350, 401
SfaNI	GCATC	2 cut(s)	424, 540
SfuI	TTCGAA	1 cut(s)	182
SphI	GCATGC	1 cut(s)	496
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	311, 455
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	3 cut(s)	182, 324, 531
TseFI	GTSAC	1 cut(s)	475
TseI	GCWGC	2 cut(s)	50, 53
Tsp45I	GTSAC	1 cut(s)	475
TspDTI	ATGAA	5 cut(s)	21, 230, 278, 477, 501
VneI	GTGCAC	1 cut(s)	409
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	518
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.