AT5G13800

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
4451733 .. 4454813
3081 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G13800.1

Sequence Viewer

Length: 1455 bp
ATGGAGATAATCTCACTGAACGTTGTGCCCCAGTGCTCTGTGGTTACTTGGAGTAGTAAATTAGCAACGAAAAGATTGGTCCCAAATCGGTCAAGTTTGTTATTCTCAGGGGTCAAAAAATCCAGACTTGTGATTCGAAGTGGAAATTCCGATGGTTATGTTGTTGGTGAGAATGATGACTTGGGTCGTATAGCCAGAAGAGGAGAATCAACGTCAAAGGTTTTGATTCCTGGTTTGCCTGATGAATCAAATGGTGAAATTGCTGCTCGAATCAGTCATTCTCACTGCGAGTGGAAGCCCAAGCTTAGAGTACATTATGAGAAAGCCGGTTGTGACAATCTCGATGCTCCTGCGGTGTTGTTTCTTCCTGGCTTTGGCGTTGGTTCATTTCACTATGAGAAGCAGCTTACCGATTTGGGAAGGGATTATCGAGTATGGGCTATTGATTTTCTTGGACAGGGTTTATCTCTCCCTACTGAAGATCCTACTACCATGACTGAAGAAACCAGTTCCTCGGAAGATAAGGAACCATTTTGGGGATTTGGTGACAAAACTGAACCGTGGGCTGATCAACTTGTATTCTCTCTGGATCTCTGGAGGGATCAAGTTCAGTATTTTGTAGAAGAGGTTATCGGTGAGCCTGTGTACATTGCAGGGAACTCACTTGGAGGGTATGTAGCTCTCTACTTTGCAGCAACCCATCCTCACCTGGTTAAGGGTGTTACCTTGCTTAATGCAACACCTTTCTGGGGTTTCTTCCCTAATCCAGTAAGATCCCCAAAGCTAGCACGTCTCTTTCCATGGCCCGGAGCATTCCCTCTGCCGGAAAGAGTGAAAAAAATCACAGAATTGGTGTGGCAAAAGATAAGTGATCCTGAAAGCATAGCTGAGATACTTAAACAGGTCTACACAGACCATTCTATCAATGTGGATAAAGTATTCTCACGTATTGTGGAGGTCACACAGCATCCGGCTGCTGCAGCATCGTTTGCTTCAATCATGCTTGCTCCTGGTGGAGAGCTATCTTTCTCCGAAGCTTTATCTAGGTGTAAGGAAAACAATGTTCAGATATGTCTCATGTATGGAAGAGAAGATCCATGGGTGAGACCGTTATGGGGAAAGAAGATAAAGAAGGAAATCCCCAACGCTCCATACTACGAGATCAGCCCAGCGGGTCACTGCCCACACGATGAAGTCCCTGAGGTGGTGAACTATCTGATGCGCGGGTGGATCAAGCACCTGGAGTCTGGTGGTTTTGAAGCGCTCCCGCTTTTGGAGGACACTGAAGAAGATTGGGAGGAGTCCAGGATTGGTAGAGAAATTGAGTTCCCGAGAGATGGTTGGAAAAAAGCAGTGAATCTGTGGTTATATGGGTCAAACTATACGTACTGGAGAGGAGTTAGAGAATCTTTCAGATCCAGTTTTATAAGGGTGTTTGGAGGGAAGTCTGCATAG

Protein Analysis

484

Amino Acids

54.57

Weight (kDa)

5.77

Isoelectric Point (pI)

40.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 117 - 248 1.8e-15 alpha/beta hydrolase fold
Hydrolase_4 PF12146 118 - 246 6.7e-06 Serine aminopeptidase, S33
Abhydrolase_6 PF12697 119 - 403 2e-20 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1427
AccI GTMKAC 1 cut(s) 906
AccII CGCG 1 cut(s) 1224
AciI CCGC 4 cut(s) 353, 1172, 1224, 1268
AclI AACGTT 1 cut(s) 21
AclWI GGATC 8 cut(s) 476, 597, 609, 768, 866, 1088, 1238, 1410
AcsI RAATTY 1 cut(s) 145
AcuI CTGAAG 3 cut(s) 498, 519, 1305
AfaI GTAC 3 cut(s) 312, 647, 1388
AfeI AGCGCT 1 cut(s) 1263
AgsI TTSAA 2 cut(s) 996, 1259
AjiI CACGTC 1 cut(s) 791
AjnI CCWGG 6 cut(s) 229, 367, 708, 1009, 1239, 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 164, 196
AluBI AGCT 7 cut(s) 304, 406, 680, 784, 887, 1021, 1037
AluI AGCT 7 cut(s) 304, 406, 680, 784, 887, 1021, 1037
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 797, 1079, 1099
AlwI GGATC 8 cut(s) 476, 597, 609, 768, 866, 1088, 1238, 1410
Ama87I CYCGRG 1 cut(s) 1330
Aor51HI AGCGCT 1 cut(s) 1263
AoxI GGCC 1 cut(s) 803
ApeKI GCWGC 6 cut(s) 263, 403, 692, 974, 977, 980
ApoI RAATTY 1 cut(s) 145
ArsI GACNNNNNNTTYG 2 cut(s) 117, 149
AspLEI GCGC 2 cut(s) 1224, 1264
AspS9I GGNCC 2 cut(s) 79, 804
AsuC2I CCSGG 1 cut(s) 807
AsuHPI GGTGA 7 cut(s) 179, 266, 557, 647, 698, 1114, 1219
AsuII TTCGAA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 784
AvaI CYCGRG 1 cut(s) 1330
AvaII GGWCC 1 cut(s) 79
AxyI CCTNAGG 1 cut(s) 1200
BaeGI GKGCMC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 6 cut(s) 250, 415, 704, 961, 964, 992
BccI CCATC 3 cut(s) 146, 708, 1331
BcgI CGANNNNNNTGC 2 cut(s) 332, 366
BciT130I CCWGG 6 cut(s) 231, 369, 710, 1011, 1241, 1306
BclI TGATCA 1 cut(s) 568
BcnI CCSGG 1 cut(s) 807
BcoDI GTCTC 3 cut(s) 797, 1079, 1099
BfaI CTAG 2 cut(s) 785, 1044
BfmI CTRYAG 1 cut(s) 978
BfoI RGCGCY 1 cut(s) 1265
BisI GCNGC 6 cut(s) 264, 404, 693, 975, 978, 981
BlsI GCNGC 6 cut(s) 265, 405, 694, 976, 979, 982
Bme1390I CCNGG 7 cut(s) 231, 369, 710, 807, 1011, 1241, 1306
Bme18I GGWCC 1 cut(s) 79
BmeT110I CYCGRG 1 cut(s) 1330
BmgBI CACGTC 1 cut(s) 791
BmgT120I GGNCC 2 cut(s) 79, 804
BmiI GGNNCC 2 cut(s) 81, 528
BmrFI CCNGG 7 cut(s) 231, 369, 710, 807, 1011, 1241, 1306
BmrI ACTGGG 1 cut(s) 25
BmsI GCATC 4 cut(s) 334, 976, 992, 1209
BmtI GCTAGC 1 cut(s) 788
BmuI ACTGGG 1 cut(s) 25
BoxI GACNNNNGTC 1 cut(s) 183
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 3 cut(s) 616, 1262, 1411
Bpu14I TTCGAA 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 807
BsaAI YACGTR 2 cut(s) 947, 1386
BsaI GGTCTC 1 cut(s) 1099
BsaJI CCNNGG 4 cut(s) 513, 560, 800, 1097
BsaXI ACNNNNNCTCC 2 cut(s) 660, 690
Bse118I RCCGGY 1 cut(s) 326
Bse1I ACTGG 5 cut(s) 31, 507, 767, 1394, 1419
Bse21I CCTNAGG 1 cut(s) 1200
Bse3DI GCAATG 1 cut(s) 648
BseBI CCWGG 6 cut(s) 231, 369, 710, 1011, 1241, 1306
BseDI CCNNGG 4 cut(s) 513, 560, 800, 1097
BseGI GGATG 2 cut(s) 700, 967
BseMI GCAATG 1 cut(s) 648
BseMII CTCAG 3 cut(s) 120, 879, 1191
BseNI ACTGG 5 cut(s) 31, 507, 767, 1394, 1419
BseRI GAGGAG 3 cut(s) 216, 1313, 1410
BseSI GKGCMC 1 cut(s) 30
BseXI GCAGC 6 cut(s) 250, 415, 704, 961, 964, 992
BseYI CCCAGC 1 cut(s) 1168
Bsh1236I CGCG 1 cut(s) 1224
BshFI GGCC 1 cut(s) 805
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 1 cut(s) 1330
BsiSI CCGG 4 cut(s) 327, 807, 824, 971
BslFI GGGAC 2 cut(s) 65, 1181
BsmAI GTCTC 3 cut(s) 797, 1079, 1099
BsmBI CGTCTC 1 cut(s) 797
BsmFI GGGAC 2 cut(s) 65, 1181
BsmI GAATGC 1 cut(s) 812
BsnI GGCC 1 cut(s) 805
Bso31I GGTCTC 1 cut(s) 1099
BsoBI CYCGRG 1 cut(s) 1330
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 2 cut(s) 30, 38
Bsp1407I TGTACA 1 cut(s) 645
Bsp19I CCATGG 2 cut(s) 800, 1097
BspACI CCGC 4 cut(s) 353, 1172, 1224, 1268
BspANI GGCC 1 cut(s) 805
BspCNI CTCAG 3 cut(s) 119, 880, 1192
BspFNI CGCG 1 cut(s) 1224
BspLI GGNNCC 2 cut(s) 81, 528
BspMAI CTGCAG 1 cut(s) 982
BspOI GCTAGC 1 cut(s) 788
BspPI GGATC 8 cut(s) 476, 597, 609, 768, 866, 1088, 1238, 1410
BspT104I TTCGAA 1 cut(s) 136
BspTNI GGTCTC 1 cut(s) 1099
BsrDI GCAATG 1 cut(s) 648
BsrFI RCCGGY 1 cut(s) 326
BsrGI TGTACA 1 cut(s) 645
BsrI ACTGG 5 cut(s) 31, 507, 767, 1394, 1419
BssAI RCCGGY 1 cut(s) 326
BssECI CCNNGG 4 cut(s) 513, 560, 800, 1097
BssT1I CCWWGG 2 cut(s) 800, 1097
Bst2UI CCWGG 6 cut(s) 231, 369, 710, 1011, 1241, 1306
Bst4CI ACNGT 2 cut(s) 561, 1110
Bst6I CTCTTC 3 cut(s) 193, 618, 1081
BstAPI GCANNNNNTGC 1 cut(s) 989
BstAUI TGTACA 1 cut(s) 645
BstBAI YACGTR 2 cut(s) 947, 1386
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 786, 1005
BstDEI CTNAG 4 cut(s) 106, 305, 888, 1200
BstDSI CCRYGG 3 cut(s) 560, 800, 1097
BstENI CCTNNNNNAGG 1 cut(s) 713
BstF5I GGATG 2 cut(s) 700, 967
BstFNI CGCG 1 cut(s) 1224
BstH2I RGCGCY 1 cut(s) 1265
BstHHI GCGC 2 cut(s) 1224, 1264
BstMAI GTCTC 3 cut(s) 797, 1079, 1099
BstMWI GCNNNNNNNGC 2 cut(s) 980, 989
BstNI CCWGG 6 cut(s) 231, 369, 710, 1011, 1241, 1306
BstPAI GACNNNNGTC 1 cut(s) 183
BstSCI CCNGG 7 cut(s) 229, 367, 708, 805, 1009, 1239, 1304
BstSFI CTRYAG 1 cut(s) 978
BstSLI GKGCMC 1 cut(s) 30
BstSNI TACGTA 1 cut(s) 1386
BstUI CGCG 1 cut(s) 1224
BstV1I GCAGC 6 cut(s) 250, 415, 704, 961, 964, 992
BstX2I RGATCY 5 cut(s) 481, 589, 773, 1093, 1415
BstYI RGATCY 5 cut(s) 481, 589, 773, 1093, 1415
Bsu36I CCTNAGG 1 cut(s) 1200
BsuRI GGCC 1 cut(s) 805
BtgI CCRYGG 3 cut(s) 560, 800, 1097
BtrI CACGTC 1 cut(s) 791
BtsCI GGATG 2 cut(s) 700, 967
BtsI GCAGTG 3 cut(s) 283, 1177, 1359
BtsIMutI CAGTG 6 cut(s) 14, 38, 283, 1177, 1281, 1359
Cac8I GCNNGC 2 cut(s) 786, 1005
CfoI GCGC 2 cut(s) 1224, 1264
Cfr10I RCCGGY 1 cut(s) 326
Cfr13I GGNCC 2 cut(s) 79, 804
CsiI ACCWGGT 1 cut(s) 708
Csp6I GTAC 3 cut(s) 311, 646, 1387
CviAII CATG 5 cut(s) 493, 801, 1000, 1078, 1098
CviQI GTAC 3 cut(s) 311, 646, 1387
DdeI CTNAG 4 cut(s) 106, 305, 888, 1200
Eam1104I CTCTTC 3 cut(s) 193, 618, 1081
EarI CTCTTC 3 cut(s) 193, 618, 1081
Eco105I TACGTA 1 cut(s) 1386
Eco130I CCWWGG 2 cut(s) 800, 1097
Eco31I GGTCTC 1 cut(s) 1099
Eco47I GGWCC 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 1263
Eco57I CTGAAG 3 cut(s) 498, 519, 1305
Eco81I CCTNAGG 1 cut(s) 1200
Eco88I CYCGRG 1 cut(s) 1330
EcoNI CCTNNNNNAGG 1 cut(s) 713
EcoRII CCWGG 6 cut(s) 229, 367, 708, 1009, 1239, 1304
EcoT14I CCWWGG 2 cut(s) 800, 1097
ErhI CCWWGG 2 cut(s) 800, 1097
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 5 cut(s) 496, 804, 1003, 1081, 1101
FaqI GGGAC 2 cut(s) 65, 1181
FatI CATG 5 cut(s) 492, 800, 999, 1077, 1097
FauI CCCGC 3 cut(s) 1165, 1217, 1275
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 906
Fnu4HI GCNGC 6 cut(s) 264, 404, 693, 975, 978, 981
FokI GGATG 2 cut(s) 687, 954
Fsp4HI GCNGC 6 cut(s) 264, 404, 693, 975, 978, 981
FspBI CTAG 2 cut(s) 785, 1044
GlaI GCGC 2 cut(s) 1223, 1263
GluI GCNGC 6 cut(s) 264, 404, 693, 975, 978, 981
GsaI CCCAGC 1 cut(s) 1172
GsuI CTGGAG 3 cut(s) 616, 1262, 1411
HaeII RGCGCY 1 cut(s) 1265
HaeIII GGCC 1 cut(s) 805
HapII CCGG 4 cut(s) 327, 807, 824, 971
HhaI GCGC 2 cut(s) 1224, 1264
Hin1II CATG 5 cut(s) 496, 804, 1003, 1081, 1101
Hin6I GCGC 2 cut(s) 1222, 1262
HinP1I GCGC 2 cut(s) 1222, 1262
HindIII AAGCTT 2 cut(s) 302, 1035
HinfI GANTC 9 cut(s) 133, 206, 226, 245, 270, 1244, 1301, 1357, 1406
HpaII CCGG 4 cut(s) 327, 807, 824, 971
HphI GGTGA 7 cut(s) 179, 266, 557, 647, 698, 1114, 1219
Hpy166II GTNNAC 3 cut(s) 646, 907, 1210
Hpy188I TCNGA 6 cut(s) 151, 517, 1033, 1068, 1218, 1415
Hpy188III TCNNGA 6 cut(s) 123, 341, 587, 595, 875, 1330
Hpy8I GTNNAC 3 cut(s) 646, 907, 1210
HpyAV CCTTC 2 cut(s) 414, 1126
HpyCH4III ACNGT 2 cut(s) 561, 1110
HpyCH4IV ACGT 5 cut(s) 21, 212, 790, 946, 1385
HpyCH4V TGCA 5 cut(s) 653, 692, 737, 980, 1451
HpyF10VI GCNNNNNNNGC 2 cut(s) 980, 989
HpyF3I CTNAG 4 cut(s) 106, 305, 888, 1200
HpySE526I ACGT 5 cut(s) 21, 212, 790, 946, 1385
Hsp92II CATG 5 cut(s) 496, 804, 1003, 1081, 1101
HspAI GCGC 2 cut(s) 1222, 1262
Ksp22I TGATCA 1 cut(s) 568
LmnI GCTCC 5 cut(s) 352, 809, 1012, 1153, 1269
Lsp1109I GCAGC 6 cut(s) 250, 415, 704, 961, 964, 992
LweI GCATC 4 cut(s) 334, 976, 992, 1209
MabI ACCWGGT 1 cut(s) 708
MaeI CTAG 2 cut(s) 785, 1044
MaeII ACGT 5 cut(s) 21, 212, 790, 946, 1385
MaeIII GTNAC 6 cut(s) 43, 332, 545, 721, 958, 1175
MflI RGATCY 5 cut(s) 481, 589, 773, 1093, 1415
MhlI GDGCHC 2 cut(s) 30, 38
MluCI AATT 5 cut(s) 59, 145, 258, 848, 1320
MlyI GAGTC 2 cut(s) 1253, 1310
MmeI TCCRAC 1 cut(s) 1322
MseI TTAA 3 cut(s) 714, 732, 897
MspA1I CMGCKG 1 cut(s) 1172
MspI CCGG 4 cut(s) 327, 807, 824, 971
MspR9I CCNGG 7 cut(s) 231, 369, 710, 807, 1011, 1241, 1306
Mva1269I GAATGC 1 cut(s) 812
MvaI CCWGG 6 cut(s) 231, 369, 710, 1011, 1241, 1306
MvnI CGCG 1 cut(s) 1224
MwoI GCNNNNNNNGC 2 cut(s) 980, 989
NciI CCSGG 1 cut(s) 807
NcoI CCATGG 2 cut(s) 800, 1097
NheI GCTAGC 1 cut(s) 784
NlaIII CATG 5 cut(s) 496, 804, 1003, 1081, 1101
NlaIV GGNNCC 2 cut(s) 81, 528
NmuCI GTSAC 4 cut(s) 332, 545, 958, 1175
NspV TTCGAA 1 cut(s) 136
PctI GAATGC 1 cut(s) 812
PfeI GAWTC 7 cut(s) 133, 206, 226, 245, 270, 1357, 1406
PfoI TCCNGGA 1 cut(s) 1304
PkrI GCNGC 6 cut(s) 265, 405, 694, 976, 979, 982
PleI GAGTC 2 cut(s) 1252, 1309
PpsI GAGTC 2 cut(s) 1252, 1309
Ppu21I YACGTR 2 cut(s) 947, 1386
PshAI GACNNNNGTC 1 cut(s) 183
PsiI TTATAA 1 cut(s) 1427
Psp1406I AACGTT 1 cut(s) 21
Psp6I CCWGG 6 cut(s) 229, 367, 708, 1009, 1239, 1304
PspFI CCCAGC 1 cut(s) 1168
PspGI CCWGG 6 cut(s) 229, 367, 708, 1009, 1239, 1304
PspN4I GGNNCC 2 cut(s) 81, 528
PspPI GGNCC 2 cut(s) 79, 804
PstI CTGCAG 1 cut(s) 982
PsuI RGATCY 5 cut(s) 481, 589, 773, 1093, 1415
RsaI GTAC 3 cut(s) 312, 647, 1388
RsaNI GTAC 3 cut(s) 311, 646, 1387
SaqAI TTAA 3 cut(s) 714, 732, 897
SatI GCNGC 6 cut(s) 264, 404, 693, 975, 978, 981
Sau96I GGNCC 2 cut(s) 79, 804
SchI GAGTC 2 cut(s) 1253, 1310
ScrFI CCNGG 7 cut(s) 231, 369, 710, 807, 1011, 1241, 1306
SduI GDGCHC 2 cut(s) 30, 38
SexAI ACCWGGT 1 cut(s) 708
SfaNI GCATC 4 cut(s) 334, 976, 992, 1209
SfcI CTRYAG 1 cut(s) 978
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 1 cut(s) 79
SnaBI TACGTA 1 cut(s) 1386
Sse9I AATT 5 cut(s) 59, 145, 258, 848, 1320
SsiI CCGC 4 cut(s) 353, 1172, 1224, 1268
SspMI CTAG 2 cut(s) 785, 1044
StyD4I CCNGG 7 cut(s) 229, 367, 708, 805, 1009, 1239, 1304
StyI CCWWGG 2 cut(s) 800, 1097
TaaI ACNGT 2 cut(s) 561, 1110
TaiI ACGT 5 cut(s) 24, 215, 793, 949, 1388
TaqI TCGA 4 cut(s) 136, 268, 342, 430
TaqII GACCGA 1 cut(s) 78
TasI AATT 5 cut(s) 59, 145, 258, 848, 1320
TatI WGTACW 2 cut(s) 310, 645
TfiI GAWTC 7 cut(s) 133, 206, 226, 245, 270, 1357, 1406
Tru1I TTAA 3 cut(s) 714, 732, 897
Tru9I TTAA 3 cut(s) 714, 732, 897
TscAI CASTG 6 cut(s) 21, 38, 290, 1184, 1288, 1359
TseFI GTSAC 4 cut(s) 332, 545, 958, 1175
TseI GCWGC 6 cut(s) 263, 403, 692, 974, 977, 980
Tsp45I GTSAC 4 cut(s) 332, 545, 958, 1175
TspDTI ATGAA 3 cut(s) 258, 375, 1206
TspRI CASTG 6 cut(s) 21, 38, 290, 1184, 1288, 1359
VpaK11BI GGWCC 1 cut(s) 79
XagI CCTNNNNNAGG 1 cut(s) 713
XapI RAATTY 1 cut(s) 145
XmiI GTMKAC 1 cut(s) 906
XspI CTAG 2 cut(s) 785, 1044
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.