RchiOBHm_Chr1g0318661

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
6213888 .. 6217449
3562 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54892

Sequence Viewer

Length: 1569 bp
ATGGAAATACTGTCATACAGTTCTGCTTCATGCTGTGATGTTGTAAATTTAAGGTGGAACTTGGTTGTAAAAAGCTCGAGTTTAAATGGATCCAAGCTCCCAGCTTTTAGAAAAAGTAGAGTTCTTTGCGCTAATTTTGATTCCACGAGTGGGGTTGTGAGCTGTTATCGTAGAAATCAGTCTTTCTCAAAGAAACTAAATCACCGGGGAGGTTTTAGGGCGTTAAACTCCCATGAGAAGTTTAAACAAGTCGGTCCAACTCTATCAAGTGGAAGCTCTGATGGCTATGTAATTGGTGTGGAAGAGGATGCAAATATTTCAGAAACCGGGGAATCAGTAACTAAAGTTTTGATTCCTGGTGTACCGGATGAATCCAATGGTGAAATAAGTGCTCCTATAAGTAGTTGCTTTTGGGAATGGAAGCCCAAATTCAATGTGCATTATGAGAAAGCAGGATCTGAAAACTTGGGCTCCCCACCAGTCCTGTTTCTTCCTGGTTTTGGAGTTGGTTCATTTCACTATGAGAAGCAAATGAAGGATTTGGGACGAGATTTTAGAGTGTGGGCAATTGATTTCCTTGGCCAGGGCATGTCCTTGCCATTGGAAGACCCTGCCCCTCGTACGAGGGAAGAAGGTATGTCGGATAGGAACAATCTTGCTTGGGGCTTTGGAGATGAATCTGAACCATGGGCAAGTGAGCTTGTTTACTCCATTGATTTATGGCAGGATCAAGTTCGTTATTTCATAGAAGAGATAATTGGTGAACCTGTCTATATTGCTGGAAACTCACTGGGAGGGTTCGTTGCTTTATATTTTGCTGCATGTAACCCTCATTTAGTGAAAGGTGTTACATTGCTCAATGCAACTCCTTTCTGGGGATTTCTACCTAATCCCATAAGATCTCCAAGATTAGCAAAAATATTTCCATGGGCAGGAACATTTCCTCTACCTGCCAATGTCAGAAAGCTCGTAGAATTTGTTTGGCAAAAGATAAGTGATCCTACGAGTATAGCACAGATACTGGAACAAGTTTATGCAGATCATTCAACAAACGTTGACAAAGTATTTTCCCGCATAGTCGAGACAGCAGAGCATCCGGCTGCTGCTGCATCATTTGCTTCAATTATGTTTGCTCCTCAGGGACAACTATCATTTAAGGAGGCTTTATCCAGATGTCAAACGAGCAACCTACCAGTTTGTCTTATGTATGGGAAAGAAGACCCATGGGTGCAACCTATTTGGGGTTTTCAGGTGAAGAAGCAGGTGCCTGAAGCTCTATTTTATGAGATCAGTCCAGCTGGTCACTGCCCTCATGATGAAGTTCCTGAGGTTGTGAATTACTTATTGCGTGGGTGGATCAAAAACCTAGAGTCTCAGGGTTTAGTCGCATTACCTTTGCTTGATGCCCAAGAAAGTGTGCAGATTAACATTGCGAGGGACTTGGAATTCATCAGAGATGGATCAAAAAAGTCGGTGAAGGTGCGCTTTTTTGGATCCAAGTTCTCACTTTGGGACAGGATAAGCTCTTACATCAGTTCTCACTTTGGGAAATTAGAGCTCAAGTCATGA

Protein Analysis

522

Amino Acids

58.2

Weight (kDa)

6.12

Isoelectric Point (pI)

44.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 159 - 440 7.1e-18 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 161 - 445 6.9e-19 Alpha/beta hydrolase family
Hydrolase_4 PF12146 161 - 412 5.9e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1252
Acc36I ACCTGC 2 cut(s) 958, 1252
AccB1I GGYRCC 1 cut(s) 1264
AciI CCGC 1 cut(s) 1072
AclI AACGTT 1 cut(s) 1053
AclWI GGATC 9 cut(s) 84, 97, 463, 735, 992, 1364, 1468, 1488, 1501
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 4 cut(s) 46, 428, 974, 1445
AcuI CTGAAG 1 cut(s) 1290
AfaI GTAC 2 cut(s) 363, 622
AfiI CCNNNNNNNGG 6 cut(s) 150, 500, 583, 875, 932, 1241
AgsI TTSAA 3 cut(s) 433, 1047, 1122
AjnI CCWGG 3 cut(s) 355, 493, 582
AjuI GAANNNNNNNTTGG 2 cut(s) 741, 773
Alw21I GWGCWC 2 cut(s) 394, 1560
Alw26I GTCTC 2 cut(s) 1076, 1377
AlwI GGATC 9 cut(s) 84, 97, 463, 735, 992, 1364, 1468, 1488, 1501
AlwNI CAGNNNCTG 2 cut(s) 458, 1021
Ama87I CYCGRG 1 cut(s) 76
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 4 cut(s) 818, 1100, 1103, 1106
ApoI RAATTY 4 cut(s) 46, 428, 974, 1445
AspLEI GCGC 2 cut(s) 131, 1485
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 2 cut(s) 206, 328
AsuHPI GGTGA 5 cut(s) 194, 392, 773, 1264, 1486
AvaI CYCGRG 1 cut(s) 76
AvaII GGWCC 1 cut(s) 254
AxyI CCTNAGG 2 cut(s) 1137, 1326
BalI TGGCCA 1 cut(s) 582
BamHI GGATCC 2 cut(s) 89, 1493
BanI GGYRCC 1 cut(s) 1264
BanII GRGCYC 2 cut(s) 473, 1560
BauI CACGAG 1 cut(s) 145
BbsI GAAGAC 2 cut(s) 612, 1224
Bbv12I GWGCWC 2 cut(s) 394, 1560
BbvI GCAGC 4 cut(s) 805, 1087, 1090, 1093
BccI CCATC 2 cut(s) 275, 1451
BciT130I CCWGG 3 cut(s) 357, 495, 584
BcnI CCSGG 2 cut(s) 206, 328
BcoDI GTCTC 2 cut(s) 1076, 1377
BfaI CTAG 1 cut(s) 1367
BfuAI ACCTGC 2 cut(s) 958, 1252
BglII AGATCT 1 cut(s) 899
BisI GCNGC 4 cut(s) 819, 1101, 1104, 1107
BlsI GCNGC 4 cut(s) 820, 1102, 1105, 1108
Bme1390I CCNGG 5 cut(s) 206, 328, 357, 495, 584
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 4 cut(s) 91, 472, 1266, 1495
BmrFI CCNGG 5 cut(s) 206, 328, 357, 495, 584
BmrI ACTGGG 1 cut(s) 800
BmsI GCATC 4 cut(s) 298, 1102, 1118, 1393
BmuI ACTGGG 1 cut(s) 800
BpiI GAAGAC 2 cut(s) 612, 1224
BpuEI CTTGAG 1 cut(s) 1544
BpuMI CCSGG 2 cut(s) 206, 328
BsaJI CCNNGG 7 cut(s) 205, 327, 577, 583, 686, 926, 1223
BsaWI WCCGGW 1 cut(s) 364
BsaXI ACNNNNNCTCC 4 cut(s) 455, 485, 786, 816
Bsc4I CCNNNNNNNGG 6 cut(s) 150, 500, 583, 875, 932, 1241
Bse1I ACTGG 4 cut(s) 479, 795, 1026, 1193
Bse21I CCTNAGG 2 cut(s) 1137, 1326
Bse3DI GCAATG 2 cut(s) 851, 1428
BseBI CCWGG 3 cut(s) 357, 495, 584
BseDI CCNNGG 7 cut(s) 205, 327, 577, 583, 686, 926, 1223
BseGI GGATG 3 cut(s) 313, 373, 1093
BseLI CCNNNNNNNGG 6 cut(s) 150, 500, 583, 875, 932, 1241
BseMI GCAATG 2 cut(s) 851, 1428
BseMII CTCAG 3 cut(s) 1151, 1317, 1388
BseNI ACTGG 4 cut(s) 479, 795, 1026, 1193
BseRI GAGGAG 1 cut(s) 1125
BseXI GCAGC 4 cut(s) 805, 1087, 1090, 1093
BseYI CCCAGC 1 cut(s) 100
BsgI GTGCAG 1 cut(s) 1439
BshFI GGCC 1 cut(s) 582
BshNI GGYRCC 1 cut(s) 1264
BsiHKAI GWGCWC 2 cut(s) 394, 1560
BsiHKCI CYCGRG 1 cut(s) 76
BsiSI CCGG 4 cut(s) 205, 327, 365, 1097
BsiWI CGTACG 1 cut(s) 620
BslFI GGGAC 4 cut(s) 558, 1155, 1451, 1526
BslI CCNNNNNNNGG 6 cut(s) 150, 500, 583, 875, 932, 1241
BsmAI GTCTC 2 cut(s) 1076, 1377
BsmFI GGGAC 4 cut(s) 558, 1155, 1451, 1526
BsnI GGCC 1 cut(s) 582
BsoBI CYCGRG 1 cut(s) 76
Bsp1286I GDGCHC 3 cut(s) 394, 473, 1560
Bsp19I CCATGG 3 cut(s) 686, 926, 1223
BspACI CCGC 1 cut(s) 1072
BspANI GGCC 1 cut(s) 582
BspCNI CTCAG 3 cut(s) 1150, 1318, 1387
BspHI TCATGA 2 cut(s) 1312, 1565
BspLI GGNNCC 4 cut(s) 91, 472, 1266, 1495
BspMI ACCTGC 2 cut(s) 958, 1252
BspPI GGATC 9 cut(s) 84, 97, 463, 735, 992, 1364, 1468, 1488, 1501
BspT107I GGYRCC 1 cut(s) 1264
BsrDI GCAATG 2 cut(s) 851, 1428
BsrI ACTGG 4 cut(s) 479, 795, 1026, 1193
BssECI CCNNGG 7 cut(s) 205, 327, 577, 583, 686, 926, 1223
BssSI CACGAG 1 cut(s) 145
BssT1I CCWWGG 4 cut(s) 577, 686, 926, 1223
Bst2BI CACGAG 1 cut(s) 145
Bst2UI CCWGG 3 cut(s) 357, 495, 584
Bst4CI ACNGT 2 cut(s) 12, 20
Bst6I CTCTTC 2 cut(s) 297, 744
BstAPI GCANNNNNTGC 1 cut(s) 1115
BstDEI CTNAG 3 cut(s) 1137, 1326, 1374
BstDSI CCRYGG 3 cut(s) 686, 926, 1223
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 3 cut(s) 313, 373, 1093
BstHHI GCGC 2 cut(s) 131, 1485
BstMAI GTCTC 2 cut(s) 1076, 1377
BstMWI GCNNNNNNNGC 3 cut(s) 282, 1106, 1115
BstNI CCWGG 3 cut(s) 357, 495, 584
BstNSI RCATGY 2 cut(s) 592, 825
BstSCI CCNGG 5 cut(s) 204, 326, 355, 493, 582
BstV1I GCAGC 4 cut(s) 805, 1087, 1090, 1093
BstV2I GAAGAC 2 cut(s) 612, 1224
BstX2I RGATCY 4 cut(s) 89, 455, 899, 1493
BstYI RGATCY 4 cut(s) 89, 455, 899, 1493
Bsu36I CCTNAGG 2 cut(s) 1137, 1326
BsuRI GGCC 1 cut(s) 582
BtgI CCRYGG 3 cut(s) 686, 926, 1223
BtsCI GGATG 3 cut(s) 313, 373, 1093
BtsI GCAGTG 1 cut(s) 1303
BtsIMutI CAGTG 2 cut(s) 788, 1303
BveI ACCTGC 2 cut(s) 958, 1252
CaiI CAGNNNCTG 2 cut(s) 458, 1021
CciI TCATGA 2 cut(s) 1312, 1565
CfoI GCGC 2 cut(s) 131, 1485
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 362, 621
CviAII CATG 9 cut(s) 30, 233, 589, 687, 822, 927, 1224, 1313, 1566
CviQI GTAC 2 cut(s) 362, 621
DdeI CTNAG 3 cut(s) 1137, 1326, 1374
DraI TTTAAA 2 cut(s) 84, 244
EaeI YGGCCR 1 cut(s) 580
Eam1104I CTCTTC 2 cut(s) 297, 744
EarI CTCTTC 2 cut(s) 297, 744
Ecl136II GAGCTC 1 cut(s) 1558
Eco130I CCWWGG 4 cut(s) 577, 686, 926, 1223
Eco24I GRGCYC 2 cut(s) 473, 1560
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 1558
Eco57I CTGAAG 1 cut(s) 1290
Eco81I CCTNAGG 2 cut(s) 1137, 1326
Eco88I CYCGRG 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 1558
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 1445
EcoRII CCWGG 3 cut(s) 355, 493, 582
EcoT14I CCWWGG 4 cut(s) 577, 686, 926, 1223
EcoT38I GRGCYC 2 cut(s) 473, 1560
ErhI CCWWGG 4 cut(s) 577, 686, 926, 1223
FaeI CATG 9 cut(s) 33, 236, 592, 690, 825, 930, 1227, 1316, 1569
FalI AAGNNNNNCTT 2 cut(s) 1469, 1501
FaqI GGGAC 4 cut(s) 558, 1155, 1451, 1526
FatI CATG 9 cut(s) 29, 232, 588, 686, 821, 926, 1223, 1312, 1565
FauI CCCGC 1 cut(s) 1079
Fnu4HI GCNGC 4 cut(s) 819, 1101, 1104, 1107
FokI GGATG 3 cut(s) 320, 380, 1080
FriOI GRGCYC 2 cut(s) 473, 1560
Fsp4HI GCNGC 4 cut(s) 819, 1101, 1104, 1107
FspBI CTAG 1 cut(s) 1367
GlaI GCGC 2 cut(s) 130, 1484
GluI GCNGC 4 cut(s) 819, 1101, 1104, 1107
GsaI CCCAGC 1 cut(s) 104
HaeIII GGCC 1 cut(s) 582
HapII CCGG 4 cut(s) 205, 327, 365, 1097
HhaI GCGC 2 cut(s) 131, 1485
Hin1II CATG 9 cut(s) 33, 236, 592, 690, 825, 930, 1227, 1316, 1569
Hin6I GCGC 2 cut(s) 129, 1483
HinP1I GCGC 2 cut(s) 129, 1483
HincII GTYRAC 1 cut(s) 1057
HindII GTYRAC 1 cut(s) 1057
HinfI GANTC 6 cut(s) 140, 332, 352, 371, 677, 1370
HpaII CCGG 4 cut(s) 205, 327, 365, 1097
HphI GGTGA 5 cut(s) 194, 392, 773, 1264, 1486
Hpy166II GTNNAC 4 cut(s) 362, 706, 764, 1057
Hpy188I TCNGA 7 cut(s) 280, 322, 460, 643, 682, 962, 1454
Hpy188III TCNNGA 5 cut(s) 1081, 1170, 1313, 1325, 1566
Hpy8I GTNNAC 4 cut(s) 362, 706, 764, 1057
HpyAV CCTTC 3 cut(s) 529, 626, 1471
HpyCH4III ACNGT 2 cut(s) 12, 20
HpyCH4IV ACGT 1 cut(s) 1053
HpyCH4V TGCA 8 cut(s) 311, 439, 821, 863, 1037, 1109, 1231, 1420
HpyF10VI GCNNNNNNNGC 3 cut(s) 282, 1106, 1115
HpyF3I CTNAG 3 cut(s) 1137, 1326, 1374
HpySE526I ACGT 1 cut(s) 1053
Hsp92II CATG 9 cut(s) 33, 236, 592, 690, 825, 930, 1227, 1316, 1569
HspAI GCGC 2 cut(s) 129, 1483
LmnI GCTCC 4 cut(s) 102, 397, 476, 1138
Lsp1109I GCAGC 4 cut(s) 805, 1087, 1090, 1093
LweI GCATC 4 cut(s) 298, 1102, 1118, 1393
MaeI CTAG 1 cut(s) 1367
MaeII ACGT 1 cut(s) 1053
MaeIII GTNAC 4 cut(s) 337, 824, 847, 1301
MboII GAAGA 7 cut(s) 314, 482, 617, 641, 761, 1229, 1267
MfeI CAATTG 1 cut(s) 567
MflI RGATCY 4 cut(s) 89, 455, 899, 1493
MhlI GDGCHC 3 cut(s) 394, 473, 1560
MlsI TGGCCA 1 cut(s) 582
MluNI TGGCCA 1 cut(s) 582
MlyI GAGTC 1 cut(s) 1379
MmeI TCCRAC 2 cut(s) 281, 621
Mox20I TGGCCA 1 cut(s) 582
MscI TGGCCA 1 cut(s) 582
MseI TTAA 6 cut(s) 50, 83, 224, 243, 1155, 1425
Msp20I TGGCCA 1 cut(s) 582
MspA1I CMGCKG 1 cut(s) 1298
MspI CCGG 4 cut(s) 205, 327, 365, 1097
MspR9I CCNGG 5 cut(s) 206, 328, 357, 495, 584
MssI GTTTAAAC 1 cut(s) 244
MunI CAATTG 1 cut(s) 567
MvaI CCWGG 3 cut(s) 357, 495, 584
MwoI GCNNNNNNNGC 3 cut(s) 282, 1106, 1115
NciI CCSGG 2 cut(s) 206, 328
NcoI CCATGG 3 cut(s) 686, 926, 1223
NlaIII CATG 9 cut(s) 33, 236, 592, 690, 825, 930, 1227, 1316, 1569
NlaIV GGNNCC 4 cut(s) 91, 472, 1266, 1495
NmuCI GTSAC 1 cut(s) 1301
NspI RCATGY 2 cut(s) 592, 825
PaeR7I CTCGAG 1 cut(s) 76
PagI TCATGA 2 cut(s) 1312, 1565
PaqCI CACCTGC 1 cut(s) 1252
PfeI GAWTC 5 cut(s) 140, 332, 352, 371, 677
Pfl23II CGTACG 1 cut(s) 620
PkrI GCNGC 4 cut(s) 820, 1102, 1105, 1108
PleI GAGTC 1 cut(s) 1378
PmeI GTTTAAAC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 1378
Psp124BI GAGCTC 1 cut(s) 1560
Psp1406I AACGTT 1 cut(s) 1053
Psp6I CCWGG 3 cut(s) 355, 493, 582
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 3 cut(s) 355, 493, 582
PspLI CGTACG 1 cut(s) 620
PspN4I GGNNCC 4 cut(s) 91, 472, 1266, 1495
PspPI GGNCC 1 cut(s) 254
PspXI VCTCGAGB 1 cut(s) 76
PstNI CAGNNNCTG 2 cut(s) 458, 1021
PsuI RGATCY 4 cut(s) 89, 455, 899, 1493
PvuII CAGCTG 1 cut(s) 1298
RsaI GTAC 2 cut(s) 363, 622
RsaNI GTAC 2 cut(s) 362, 621
SacI GAGCTC 1 cut(s) 1560
SaqAI TTAA 6 cut(s) 50, 83, 224, 243, 1155, 1425
SatI GCNGC 4 cut(s) 819, 1101, 1104, 1107
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 1379
ScrFI CCNGG 5 cut(s) 206, 328, 357, 495, 584
SduI GDGCHC 3 cut(s) 394, 473, 1560
SfaNI GCATC 4 cut(s) 298, 1102, 1118, 1393
Sfr274I CTCGAG 1 cut(s) 76
SinI GGWCC 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 76
SmlI CTYRAG 2 cut(s) 76, 1559
SmoI CTYRAG 2 cut(s) 76, 1559
SsiI CCGC 1 cut(s) 1072
SspI AATATT 2 cut(s) 316, 921
SspMI CTAG 1 cut(s) 1367
SstI GAGCTC 1 cut(s) 1560
StyD4I CCNGG 5 cut(s) 204, 326, 355, 493, 582
StyI CCWWGG 4 cut(s) 577, 686, 926, 1223
TaaI ACNGT 2 cut(s) 12, 20
TaiI ACGT 1 cut(s) 1056
TaqI TCGA 2 cut(s) 77, 1080
TaqII GACCGA 1 cut(s) 242
TfiI GAWTC 5 cut(s) 140, 332, 352, 371, 677
Tru1I TTAA 6 cut(s) 50, 83, 224, 243, 1155, 1425
Tru9I TTAA 6 cut(s) 50, 83, 224, 243, 1155, 1425
TscAI CASTG 2 cut(s) 795, 1310
TseFI GTSAC 1 cut(s) 1301
TseI GCWGC 4 cut(s) 818, 1100, 1103, 1106
Tsp45I GTSAC 1 cut(s) 1301
TspDTI ATGAA 8 cut(s) 18, 384, 501, 548, 690, 733, 1332, 1438
TspRI CASTG 2 cut(s) 795, 1310
VpaK11BI GGWCC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 4 cut(s) 46, 428, 974, 1445
XceI RCATGY 2 cut(s) 592, 825
XhoI CTCGAG 1 cut(s) 76
XspI CTAG 1 cut(s) 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.