Alpha/beta hydrolase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13800 AT5G13800 AT5G13800 AT5G13800 |
| fragaria_vesca | FvH4_7g01940 FvH4_7g01940 |
| malus_domestica | MD02G1299000.v1.1 MD07G1025100.v1.1 |
| prunus_persica | Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1 |
| pyrus_communis | pycom02g25150 pycom02g25160 pycom07g01940 |
| rosa_chinensis | RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891 |
| rosa_laevigata | RLG00000030519 |
| rosa_multiflora | Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013 |
| rosa_roxburghii | Rroxscaffold_4G00328990 |
| rosa_rugosa | Rorug01G0022600 Rorug01G0022700 |
| rosa_samantha | Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700 |
| rosa_wichuraiana | Rw1G002790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1252 |
| Acc36I | ACCTGC | 2 cut(s) | 958, 1252 |
| AccB1I | GGYRCC | 1 cut(s) | 1264 |
| AciI | CCGC | 1 cut(s) | 1072 |
| AclWI | GGATC | 9 cut(s) | 84, 97, 463, 735, 992, 1364, 1468, 1488, 1501 |
| AcoI | YGGCCR | 1 cut(s) | 580 |
| AcsI | RAATTY | 4 cut(s) | 46, 428, 974, 1445 |
| AcuI | CTGAAG | 1 cut(s) | 1290 |
| AfaI | GTAC | 2 cut(s) | 363, 622 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 150, 500, 583, 687, 875, 932, 1241 |
| AgsI | TTSAA | 3 cut(s) | 433, 1047, 1122 |
| AjnI | CCWGG | 3 cut(s) | 355, 493, 582 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 741, 773 |
| Alw21I | GWGCWC | 2 cut(s) | 394, 1560 |
| Alw26I | GTCTC | 2 cut(s) | 1076, 1377 |
| AlwI | GGATC | 9 cut(s) | 84, 97, 463, 735, 992, 1364, 1468, 1488, 1501 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 326, 458, 1021 |
| Ama87I | CYCGRG | 1 cut(s) | 76 |
| AoxI | GGCC | 1 cut(s) | 580 |
| ApeKI | GCWGC | 4 cut(s) | 818, 1100, 1103, 1106 |
| ApoI | RAATTY | 4 cut(s) | 46, 428, 974, 1445 |
| AspA2I | CCTAGG | 1 cut(s) | 1001 |
| AspLEI | GCGC | 2 cut(s) | 1015, 1485 |
| AspS9I | GGNCC | 1 cut(s) | 254 |
| AsuC2I | CCSGG | 1 cut(s) | 206 |
| AsuHPI | GGTGA | 5 cut(s) | 194, 392, 773, 1264, 1486 |
| AvaI | CYCGRG | 1 cut(s) | 76 |
| AvaII | GGWCC | 1 cut(s) | 254 |
| AvrII | CCTAGG | 1 cut(s) | 1001 |
| AxyI | CCTNAGG | 2 cut(s) | 1137, 1326 |
| BalI | TGGCCA | 1 cut(s) | 582 |
| BamHI | GGATCC | 2 cut(s) | 89, 1493 |
| BanI | GGYRCC | 1 cut(s) | 1264 |
| BanII | GRGCYC | 1 cut(s) | 1560 |
| BbsI | GAAGAC | 2 cut(s) | 612, 1224 |
| Bbv12I | GWGCWC | 2 cut(s) | 394, 1560 |
| BbvI | GCAGC | 4 cut(s) | 805, 1087, 1090, 1093 |
| BccI | CCATC | 2 cut(s) | 275, 1451 |
| BciT130I | CCWGG | 3 cut(s) | 357, 495, 584 |
| BclI | TGATCA | 1 cut(s) | 1039 |
| BcnI | CCSGG | 1 cut(s) | 206 |
| BcoDI | GTCTC | 2 cut(s) | 1076, 1377 |
| BfaI | CTAG | 4 cut(s) | 624, 911, 1002, 1367 |
| BfuAI | ACCTGC | 2 cut(s) | 958, 1252 |
| BglII | AGATCT | 1 cut(s) | 899 |
| BisI | GCNGC | 4 cut(s) | 819, 1101, 1104, 1107 |
| BlnI | CCTAGG | 1 cut(s) | 1001 |
| BlsI | GCNGC | 4 cut(s) | 820, 1102, 1105, 1108 |
| Bme1390I | CCNGG | 4 cut(s) | 206, 357, 495, 584 |
| Bme18I | GGWCC | 1 cut(s) | 254 |
| BmeT110I | CYCGRG | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 1 cut(s) | 254 |
| BmiI | GGNNCC | 4 cut(s) | 91, 472, 1266, 1495 |
| BmrFI | CCNGG | 4 cut(s) | 206, 357, 495, 584 |
| BmrI | ACTGGG | 2 cut(s) | 336, 800 |
| BmsI | GCATC | 3 cut(s) | 298, 1118, 1393 |
| BmuI | ACTGGG | 2 cut(s) | 336, 800 |
| BpiI | GAAGAC | 2 cut(s) | 612, 1224 |
| BpuEI | CTTGAG | 2 cut(s) | 1359, 1544 |
| BpuMI | CCSGG | 1 cut(s) | 206 |
| BsaAI | YACGTR | 1 cut(s) | 289 |
| BsaJI | CCNNGG | 7 cut(s) | 205, 577, 583, 686, 926, 1001, 1223 |
| BsaWI | WCCGGW | 1 cut(s) | 364 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 455, 485, 786, 816 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 150, 500, 583, 687, 875, 932, 1241 |
| Bse1I | ACTGG | 6 cut(s) | 331, 479, 795, 1026, 1170, 1193 |
| Bse21I | CCTNAGG | 2 cut(s) | 1137, 1326 |
| Bse3DI | GCAATG | 2 cut(s) | 851, 1428 |
| BseBI | CCWGG | 3 cut(s) | 357, 495, 584 |
| BseDI | CCNNGG | 7 cut(s) | 205, 577, 583, 686, 926, 1001, 1223 |
| BseGI | GGATG | 3 cut(s) | 313, 373, 1093 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 150, 500, 583, 687, 875, 932, 1241 |
| BseMI | GCAATG | 2 cut(s) | 851, 1428 |
| BseMII | CTCAG | 1 cut(s) | 1317 |
| BseNI | ACTGG | 6 cut(s) | 331, 479, 795, 1026, 1170, 1193 |
| BseXI | GCAGC | 4 cut(s) | 805, 1087, 1090, 1093 |
| BseYI | CCCAGC | 1 cut(s) | 100 |
| BsgI | GTGCAG | 1 cut(s) | 1439 |
| BshFI | GGCC | 1 cut(s) | 582 |
| BshNI | GGYRCC | 1 cut(s) | 1264 |
| BsiHKAI | GWGCWC | 2 cut(s) | 394, 1560 |
| BsiHKCI | CYCGRG | 1 cut(s) | 76 |
| BsiSI | CCGG | 3 cut(s) | 205, 365, 1097 |
| BslFI | GGGAC | 5 cut(s) | 558, 1155, 1370, 1451, 1526 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 150, 500, 583, 687, 875, 932, 1241 |
| BsmAI | GTCTC | 2 cut(s) | 1076, 1377 |
| BsmFI | GGGAC | 5 cut(s) | 558, 1155, 1370, 1451, 1526 |
| BsnI | GGCC | 1 cut(s) | 582 |
| BsoBI | CYCGRG | 1 cut(s) | 76 |
| Bsp1286I | GDGCHC | 2 cut(s) | 394, 1560 |
| Bsp19I | CCATGG | 3 cut(s) | 686, 926, 1223 |
| BspACI | CCGC | 1 cut(s) | 1072 |
| BspANI | GGCC | 1 cut(s) | 582 |
| BspCNI | CTCAG | 1 cut(s) | 1318 |
| BspHI | TCATGA | 1 cut(s) | 1312 |
| BspLI | GGNNCC | 4 cut(s) | 91, 472, 1266, 1495 |
| BspMI | ACCTGC | 2 cut(s) | 958, 1252 |
| BspPI | GGATC | 9 cut(s) | 84, 97, 463, 735, 992, 1364, 1468, 1488, 1501 |
| BspT107I | GGYRCC | 1 cut(s) | 1264 |
| BsrDI | GCAATG | 2 cut(s) | 851, 1428 |
| BsrI | ACTGG | 6 cut(s) | 331, 479, 795, 1026, 1170, 1193 |
| BssECI | CCNNGG | 7 cut(s) | 205, 577, 583, 686, 926, 1001, 1223 |
| BssT1I | CCWWGG | 5 cut(s) | 577, 686, 926, 1001, 1223 |
| Bst2UI | CCWGG | 3 cut(s) | 357, 495, 584 |
| Bst4CI | ACNGT | 2 cut(s) | 12, 20 |
| Bst6I | CTCTTC | 2 cut(s) | 297, 744 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1115 |
| BstBAI | YACGTR | 1 cut(s) | 289 |
| BstDEI | CTNAG | 3 cut(s) | 466, 1137, 1326 |
| BstDSI | CCRYGG | 3 cut(s) | 686, 926, 1223 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 581 |
| BstF5I | GGATG | 3 cut(s) | 313, 373, 1093 |
| BstHHI | GCGC | 2 cut(s) | 1015, 1485 |
| BstMAI | GTCTC | 2 cut(s) | 1076, 1377 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 282, 1106, 1115 |
| BstNI | CCWGG | 3 cut(s) | 357, 495, 584 |
| BstNSI | RCATGY | 2 cut(s) | 592, 825 |
| BstSCI | CCNGG | 4 cut(s) | 204, 355, 493, 582 |
| BstSNI | TACGTA | 1 cut(s) | 289 |
| BstV1I | GCAGC | 4 cut(s) | 805, 1087, 1090, 1093 |
| BstV2I | GAAGAC | 2 cut(s) | 612, 1224 |
| BstX2I | RGATCY | 4 cut(s) | 89, 455, 899, 1493 |
| BstYI | RGATCY | 4 cut(s) | 89, 455, 899, 1493 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1137, 1326 |
| BsuRI | GGCC | 1 cut(s) | 582 |
| BtgI | CCRYGG | 3 cut(s) | 686, 926, 1223 |
| BtsCI | GGATG | 3 cut(s) | 313, 373, 1093 |
| BtsI | GCAGTG | 1 cut(s) | 1303 |
| BtsIMutI | CAGTG | 3 cut(s) | 486, 788, 1303 |
| BveI | ACCTGC | 2 cut(s) | 958, 1252 |
| CaiI | CAGNNNCTG | 3 cut(s) | 326, 458, 1021 |
| CciI | TCATGA | 1 cut(s) | 1312 |
| CfoI | GCGC | 2 cut(s) | 1015, 1485 |
| Cfr13I | GGNCC | 1 cut(s) | 254 |
| Csp6I | GTAC | 2 cut(s) | 362, 621 |
| CviAII | CATG | 8 cut(s) | 30, 233, 589, 687, 822, 927, 1224, 1313 |
| CviQI | GTAC | 2 cut(s) | 362, 621 |
| DdeI | CTNAG | 3 cut(s) | 466, 1137, 1326 |
| DraI | TTTAAA | 2 cut(s) | 84, 244 |
| EaeI | YGGCCR | 1 cut(s) | 580 |
| Eam1104I | CTCTTC | 2 cut(s) | 297, 744 |
| EarI | CTCTTC | 2 cut(s) | 297, 744 |
| Ecl136II | GAGCTC | 1 cut(s) | 1558 |
| Eco105I | TACGTA | 1 cut(s) | 289 |
| Eco130I | CCWWGG | 5 cut(s) | 577, 686, 926, 1001, 1223 |
| Eco24I | GRGCYC | 1 cut(s) | 1560 |
| Eco47I | GGWCC | 1 cut(s) | 254 |
| Eco53kI | GAGCTC | 1 cut(s) | 1558 |
| Eco57I | CTGAAG | 1 cut(s) | 1290 |
| Eco81I | CCTNAGG | 2 cut(s) | 1137, 1326 |
| Eco88I | CYCGRG | 1 cut(s) | 76 |
| EcoICRI | GAGCTC | 1 cut(s) | 1558 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 581 |
| EcoRI | GAATTC | 1 cut(s) | 1445 |
| EcoRII | CCWGG | 3 cut(s) | 355, 493, 582 |
| EcoT14I | CCWWGG | 5 cut(s) | 577, 686, 926, 1001, 1223 |
| EcoT38I | GRGCYC | 1 cut(s) | 1560 |
| ErhI | CCWWGG | 5 cut(s) | 577, 686, 926, 1001, 1223 |
| FaeI | CATG | 8 cut(s) | 33, 236, 592, 690, 825, 930, 1227, 1316 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1469, 1501 |
| FaqI | GGGAC | 5 cut(s) | 558, 1155, 1370, 1451, 1526 |
| FatI | CATG | 8 cut(s) | 29, 232, 588, 686, 821, 926, 1223, 1312 |
| FauI | CCCGC | 1 cut(s) | 1079 |
| FbaI | TGATCA | 1 cut(s) | 1039 |
| Fnu4HI | GCNGC | 4 cut(s) | 819, 1101, 1104, 1107 |
| FokI | GGATG | 3 cut(s) | 320, 380, 1080 |
| FriOI | GRGCYC | 1 cut(s) | 1560 |
| Fsp4HI | GCNGC | 4 cut(s) | 819, 1101, 1104, 1107 |
| FspBI | CTAG | 4 cut(s) | 624, 911, 1002, 1367 |
| GlaI | GCGC | 2 cut(s) | 1014, 1484 |
| GluI | GCNGC | 4 cut(s) | 819, 1101, 1104, 1107 |
| GsaI | CCCAGC | 1 cut(s) | 104 |
| HaeIII | GGCC | 1 cut(s) | 582 |
| HapII | CCGG | 3 cut(s) | 205, 365, 1097 |
| HhaI | GCGC | 2 cut(s) | 1015, 1485 |
| Hin1II | CATG | 8 cut(s) | 33, 236, 592, 690, 825, 930, 1227, 1316 |
| Hin6I | GCGC | 2 cut(s) | 1013, 1483 |
| HinP1I | GCGC | 2 cut(s) | 1013, 1483 |
| HinfI | GANTC | 6 cut(s) | 140, 332, 352, 371, 677, 1370 |
| HpaII | CCGG | 3 cut(s) | 205, 365, 1097 |
| HphI | GGTGA | 5 cut(s) | 194, 392, 773, 1264, 1486 |
| Hpy166II | GTNNAC | 3 cut(s) | 362, 706, 764 |
| Hpy188I | TCNGA | 7 cut(s) | 280, 322, 460, 643, 682, 962, 1454 |
| Hpy188III | TCNNGA | 3 cut(s) | 1081, 1313, 1325 |
| Hpy8I | GTNNAC | 3 cut(s) | 362, 706, 764 |
| HpyAV | CCTTC | 3 cut(s) | 529, 626, 1471 |
| HpyCH4III | ACNGT | 2 cut(s) | 12, 20 |
| HpyCH4IV | ACGT | 2 cut(s) | 288, 1507 |
| HpyCH4V | TGCA | 7 cut(s) | 311, 439, 821, 863, 1109, 1231, 1420 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 282, 1106, 1115 |
| HpyF3I | CTNAG | 3 cut(s) | 466, 1137, 1326 |
| HpySE526I | ACGT | 2 cut(s) | 288, 1507 |
| Hsp92II | CATG | 8 cut(s) | 33, 236, 592, 690, 825, 930, 1227, 1316 |
| HspAI | GCGC | 2 cut(s) | 1013, 1483 |
| Ksp22I | TGATCA | 1 cut(s) | 1039 |
| LmnI | GCTCC | 3 cut(s) | 397, 476, 1138 |
| Lsp1109I | GCAGC | 4 cut(s) | 805, 1087, 1090, 1093 |
| LweI | GCATC | 3 cut(s) | 298, 1118, 1393 |
| MaeI | CTAG | 4 cut(s) | 624, 911, 1002, 1367 |
| MaeII | ACGT | 2 cut(s) | 288, 1507 |
| MaeIII | GTNAC | 4 cut(s) | 337, 824, 847, 1301 |
| MboII | GAAGA | 7 cut(s) | 314, 482, 617, 641, 761, 1229, 1267 |
| MfeI | CAATTG | 1 cut(s) | 567 |
| MflI | RGATCY | 4 cut(s) | 89, 455, 899, 1493 |
| MhlI | GDGCHC | 2 cut(s) | 394, 1560 |
| MlsI | TGGCCA | 1 cut(s) | 582 |
| MluNI | TGGCCA | 1 cut(s) | 582 |
| MlyI | GAGTC | 1 cut(s) | 1379 |
| MmeI | TCCRAC | 1 cut(s) | 621 |
| Mox20I | TGGCCA | 1 cut(s) | 582 |
| MscI | TGGCCA | 1 cut(s) | 582 |
| MseI | TTAA | 7 cut(s) | 50, 83, 216, 224, 243, 1155, 1425 |
| Msp20I | TGGCCA | 1 cut(s) | 582 |
| MspA1I | CMGCKG | 1 cut(s) | 1298 |
| MspI | CCGG | 3 cut(s) | 205, 365, 1097 |
| MspR9I | CCNGG | 4 cut(s) | 206, 357, 495, 584 |
| MssI | GTTTAAAC | 1 cut(s) | 244 |
| MunI | CAATTG | 1 cut(s) | 567 |
| MvaI | CCWGG | 3 cut(s) | 357, 495, 584 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 282, 1106, 1115 |
| NciI | CCSGG | 1 cut(s) | 206 |
| NcoI | CCATGG | 3 cut(s) | 686, 926, 1223 |
| NlaIII | CATG | 8 cut(s) | 33, 236, 592, 690, 825, 930, 1227, 1316 |
| NlaIV | GGNNCC | 4 cut(s) | 91, 472, 1266, 1495 |
| NmuCI | GTSAC | 1 cut(s) | 1301 |
| NspI | RCATGY | 2 cut(s) | 592, 825 |
| PaeR7I | CTCGAG | 1 cut(s) | 76 |
| PagI | TCATGA | 1 cut(s) | 1312 |
| PaqCI | CACCTGC | 1 cut(s) | 1252 |
| PfeI | GAWTC | 5 cut(s) | 140, 332, 352, 371, 677 |
| PkrI | GCNGC | 4 cut(s) | 820, 1102, 1105, 1108 |
| PleI | GAGTC | 1 cut(s) | 1378 |
| PmeI | GTTTAAAC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 1378 |
| Ppu21I | YACGTR | 1 cut(s) | 289 |
| Psp124BI | GAGCTC | 1 cut(s) | 1560 |
| Psp6I | CCWGG | 3 cut(s) | 355, 493, 582 |
| PspFI | CCCAGC | 1 cut(s) | 100 |
| PspGI | CCWGG | 3 cut(s) | 355, 493, 582 |
| PspN4I | GGNNCC | 4 cut(s) | 91, 472, 1266, 1495 |
| PspPI | GGNCC | 1 cut(s) | 254 |
| PspXI | VCTCGAGB | 1 cut(s) | 76 |
| PstNI | CAGNNNCTG | 3 cut(s) | 326, 458, 1021 |
| PsuI | RGATCY | 4 cut(s) | 89, 455, 899, 1493 |
| PvuII | CAGCTG | 1 cut(s) | 1298 |
| RsaI | GTAC | 2 cut(s) | 363, 622 |
| RsaNI | GTAC | 2 cut(s) | 362, 621 |
| SacI | GAGCTC | 1 cut(s) | 1560 |
| SaqAI | TTAA | 7 cut(s) | 50, 83, 216, 224, 243, 1155, 1425 |
| SatI | GCNGC | 4 cut(s) | 819, 1101, 1104, 1107 |
| Sau96I | GGNCC | 1 cut(s) | 254 |
| SchI | GAGTC | 1 cut(s) | 1379 |
| ScrFI | CCNGG | 4 cut(s) | 206, 357, 495, 584 |
| SduI | GDGCHC | 2 cut(s) | 394, 1560 |
| SfaNI | GCATC | 3 cut(s) | 298, 1118, 1393 |
| Sfr274I | CTCGAG | 1 cut(s) | 76 |
| SinI | GGWCC | 1 cut(s) | 254 |
| SlaI | CTCGAG | 1 cut(s) | 76 |
| SmlI | CTYRAG | 3 cut(s) | 76, 1374, 1559 |
| SmoI | CTYRAG | 3 cut(s) | 76, 1374, 1559 |
| SnaBI | TACGTA | 1 cut(s) | 289 |
| SsiI | CCGC | 1 cut(s) | 1072 |
| SspI | AATATT | 2 cut(s) | 316, 921 |
| SspMI | CTAG | 4 cut(s) | 624, 911, 1002, 1367 |
| SstI | GAGCTC | 1 cut(s) | 1560 |
| StyD4I | CCNGG | 4 cut(s) | 204, 355, 493, 582 |
| StyI | CCWWGG | 5 cut(s) | 577, 686, 926, 1001, 1223 |
| TaaI | ACNGT | 2 cut(s) | 12, 20 |
| TaiI | ACGT | 2 cut(s) | 291, 1510 |
| TaqI | TCGA | 2 cut(s) | 77, 1080 |
| TfiI | GAWTC | 5 cut(s) | 140, 332, 352, 371, 677 |
| Tru1I | TTAA | 7 cut(s) | 50, 83, 216, 224, 243, 1155, 1425 |
| Tru9I | TTAA | 7 cut(s) | 50, 83, 216, 224, 243, 1155, 1425 |
| TscAI | CASTG | 3 cut(s) | 486, 795, 1310 |
| TseFI | GTSAC | 1 cut(s) | 1301 |
| TseI | GCWGC | 4 cut(s) | 818, 1100, 1103, 1106 |
| Tsp45I | GTSAC | 1 cut(s) | 1301 |
| TspDTI | ATGAA | 8 cut(s) | 18, 384, 501, 548, 690, 733, 1332, 1438 |
| TspRI | CASTG | 3 cut(s) | 486, 795, 1310 |
| VpaK11BI | GGWCC | 1 cut(s) | 254 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 581 |
| XapI | RAATTY | 4 cut(s) | 46, 428, 974, 1445 |
| XceI | RCATGY | 2 cut(s) | 592, 825 |
| XhoI | CTCGAG | 1 cut(s) | 76 |
| XmaJI | CCTAGG | 1 cut(s) | 1001 |
| XspI | CTAG | 4 cut(s) | 624, 911, 1002, 1367 |