Alpha/beta hydrolase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G13800 AT5G13800 AT5G13800 AT5G13800 |
| fragaria_vesca | FvH4_7g01940 FvH4_7g01940 |
| malus_domestica | MD02G1299000.v1.1 MD07G1025100.v1.1 |
| prunus_persica | Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1 |
| pyrus_communis | pycom02g25150 pycom02g25160 pycom07g01940 |
| rosa_chinensis | RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891 |
| rosa_laevigata | RLG00000030519 |
| rosa_multiflora | Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013 |
| rosa_roxburghii | Rroxscaffold_4G00328990 |
| rosa_rugosa | Rorug01G0022600 Rorug01G0022700 |
| rosa_samantha | Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700 |
| rosa_wichuraiana | Rw1G002790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1258 |
| Acc36I | ACCTGC | 2 cut(s) | 964, 1258 |
| AccB1I | GGYRCC | 1 cut(s) | 1270 |
| AccBSI | CCGCTC | 1 cut(s) | 305 |
| AccI | GTMKAC | 1 cut(s) | 367 |
| AciI | CCGC | 4 cut(s) | 144, 305, 1078, 1489 |
| AclWI | GGATC | 8 cut(s) | 84, 97, 469, 741, 998, 1370, 1474, 1507 |
| AcsI | RAATTY | 2 cut(s) | 46, 980 |
| AcuI | CTGAAG | 1 cut(s) | 1296 |
| AfaI | GTAC | 2 cut(s) | 628, 1236 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 506, 589, 881, 938, 966, 1247 |
| AgeI | ACCGGT | 1 cut(s) | 332 |
| AgsI | TTSAA | 3 cut(s) | 439, 1053, 1128 |
| AjnI | CCWGG | 3 cut(s) | 361, 499, 1439 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1436, 1468 |
| Alw21I | GWGCWC | 2 cut(s) | 400, 1566 |
| Alw26I | GTCTC | 3 cut(s) | 323, 1082, 1211 |
| AlwI | GGATC | 8 cut(s) | 84, 97, 469, 741, 998, 1370, 1474, 1507 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 284, 464 |
| ApeKI | GCWGC | 4 cut(s) | 824, 1106, 1109, 1112 |
| ApoI | RAATTY | 2 cut(s) | 46, 980 |
| AsiGI | ACCGGT | 1 cut(s) | 332 |
| AspA2I | CCTAGG | 1 cut(s) | 1007 |
| AspS9I | GGNCC | 1 cut(s) | 254 |
| AsuC2I | CCSGG | 1 cut(s) | 206 |
| AsuHPI | GGTGA | 3 cut(s) | 194, 347, 398 |
| AvaII | GGWCC | 1 cut(s) | 254 |
| AvrII | CCTAGG | 1 cut(s) | 1007 |
| AxyI | CCTNAGG | 2 cut(s) | 1143, 1332 |
| BamHI | GGATCC | 1 cut(s) | 89 |
| BanI | GGYRCC | 1 cut(s) | 1270 |
| BanII | GRGCYC | 2 cut(s) | 479, 1566 |
| BbsI | GAAGAC | 2 cut(s) | 618, 1230 |
| Bbv12I | GWGCWC | 2 cut(s) | 400, 1566 |
| BbvI | GCAGC | 4 cut(s) | 811, 1093, 1096, 1099 |
| BccI | CCATC | 2 cut(s) | 281, 1457 |
| BciT130I | CCWGG | 3 cut(s) | 363, 501, 1441 |
| BcnI | CCSGG | 1 cut(s) | 206 |
| BcoDI | GTCTC | 3 cut(s) | 323, 1082, 1211 |
| BfaI | CTAG | 2 cut(s) | 630, 1008 |
| BfuAI | ACCTGC | 2 cut(s) | 964, 1258 |
| BglII | AGATCT | 1 cut(s) | 905 |
| BisI | GCNGC | 4 cut(s) | 825, 1107, 1110, 1113 |
| BlnI | CCTAGG | 1 cut(s) | 1007 |
| BlsI | GCNGC | 4 cut(s) | 826, 1108, 1111, 1114 |
| Bme1390I | CCNGG | 4 cut(s) | 206, 363, 501, 1441 |
| Bme18I | GGWCC | 1 cut(s) | 254 |
| BmgT120I | GGNCC | 1 cut(s) | 254 |
| BmiI | GGNNCC | 3 cut(s) | 91, 478, 1272 |
| BmrFI | CCNGG | 4 cut(s) | 206, 363, 501, 1441 |
| BmsI | GCATC | 3 cut(s) | 304, 1124, 1399 |
| BpiI | GAAGAC | 2 cut(s) | 618, 1230 |
| Bpu10I | CCTNAGC | 1 cut(s) | 277 |
| BpuMI | CCSGG | 1 cut(s) | 206 |
| BsaI | GGTCTC | 1 cut(s) | 323 |
| BsaJI | CCNNGG | 7 cut(s) | 205, 583, 692, 932, 1007, 1229, 1440 |
| BsaWI | WCCGGW | 1 cut(s) | 332 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 461, 491, 792, 822 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 506, 589, 881, 938, 966, 1247 |
| Bse118I | RCCGGY | 1 cut(s) | 332 |
| Bse1I | ACTGG | 4 cut(s) | 485, 790, 921, 1199 |
| Bse21I | CCTNAGG | 2 cut(s) | 1143, 1332 |
| Bse3DI | GCAATG | 2 cut(s) | 857, 1434 |
| BseBI | CCWGG | 3 cut(s) | 363, 501, 1441 |
| BseDI | CCNNGG | 7 cut(s) | 205, 583, 692, 932, 1007, 1229, 1440 |
| BseGI | GGATG | 2 cut(s) | 319, 1099 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 506, 589, 881, 938, 966, 1247 |
| BseMI | GCAATG | 2 cut(s) | 857, 1434 |
| BseMII | CTCAG | 6 cut(s) | 75, 291, 1157, 1323, 1394, 1559 |
| BseNI | ACTGG | 4 cut(s) | 485, 790, 921, 1199 |
| BseRI | GAGGAG | 1 cut(s) | 1131 |
| BseXI | GCAGC | 4 cut(s) | 811, 1093, 1096, 1099 |
| BseYI | CCCAGC | 1 cut(s) | 100 |
| BshNI | GGYRCC | 1 cut(s) | 1270 |
| BshTI | ACCGGT | 1 cut(s) | 332 |
| BsiHKAI | GWGCWC | 2 cut(s) | 400, 1566 |
| BsiSI | CCGG | 3 cut(s) | 205, 333, 1103 |
| BslFI | GGGAC | 2 cut(s) | 564, 1532 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 506, 589, 881, 938, 966, 1247 |
| BsmAI | GTCTC | 3 cut(s) | 323, 1082, 1211 |
| BsmFI | GGGAC | 2 cut(s) | 564, 1532 |
| Bso31I | GGTCTC | 1 cut(s) | 323 |
| Bsp1286I | GDGCHC | 3 cut(s) | 400, 479, 1566 |
| Bsp19I | CCATGG | 3 cut(s) | 692, 932, 1229 |
| BspACI | CCGC | 4 cut(s) | 144, 305, 1078, 1489 |
| BspCNI | CTCAG | 6 cut(s) | 74, 290, 1156, 1324, 1393, 1558 |
| BspHI | TCATGA | 2 cut(s) | 1318, 1571 |
| BspLI | GGNNCC | 3 cut(s) | 91, 478, 1272 |
| BspMI | ACCTGC | 2 cut(s) | 964, 1258 |
| BspPI | GGATC | 8 cut(s) | 84, 97, 469, 741, 998, 1370, 1474, 1507 |
| BspT107I | GGYRCC | 1 cut(s) | 1270 |
| BspTNI | GGTCTC | 1 cut(s) | 323 |
| BsrBI | CCGCTC | 1 cut(s) | 305 |
| BsrDI | GCAATG | 2 cut(s) | 857, 1434 |
| BsrFI | RCCGGY | 1 cut(s) | 332 |
| BsrI | ACTGG | 4 cut(s) | 485, 790, 921, 1199 |
| BssAI | RCCGGY | 1 cut(s) | 332 |
| BssECI | CCNNGG | 7 cut(s) | 205, 583, 692, 932, 1007, 1229, 1440 |
| BssNAI | GTATAC | 1 cut(s) | 368 |
| BssT1I | CCWWGG | 4 cut(s) | 692, 932, 1007, 1229 |
| Bst1107I | GTATAC | 1 cut(s) | 368 |
| Bst2UI | CCWGG | 3 cut(s) | 363, 501, 1441 |
| Bst4CI | ACNGT | 1 cut(s) | 20 |
| Bst6I | CTCTTC | 2 cut(s) | 303, 750 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 1121 |
| BstDEI | CTNAG | 7 cut(s) | 61, 277, 392, 1143, 1332, 1380, 1545 |
| BstDSI | CCRYGG | 3 cut(s) | 692, 932, 1229 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 587 |
| BstF5I | GGATG | 2 cut(s) | 319, 1099 |
| BstMAI | GTCTC | 3 cut(s) | 323, 1082, 1211 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 288, 1112, 1121 |
| BstNI | CCWGG | 3 cut(s) | 363, 501, 1441 |
| BstNSI | RCATGY | 2 cut(s) | 598, 831 |
| BstSCI | CCNGG | 4 cut(s) | 204, 361, 499, 1439 |
| BstV1I | GCAGC | 4 cut(s) | 811, 1093, 1096, 1099 |
| BstV2I | GAAGAC | 2 cut(s) | 618, 1230 |
| BstX2I | RGATCY | 3 cut(s) | 89, 461, 905 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1447 |
| BstYI | RGATCY | 3 cut(s) | 89, 461, 905 |
| BstZ17I | GTATAC | 1 cut(s) | 368 |
| Bsu36I | CCTNAGG | 2 cut(s) | 1143, 1332 |
| BtgI | CCRYGG | 3 cut(s) | 692, 932, 1229 |
| BtsCI | GGATG | 2 cut(s) | 319, 1099 |
| BtsI | GCAGTG | 1 cut(s) | 1309 |
| BtsIMutI | CAGTG | 4 cut(s) | 492, 914, 1309, 1485 |
| BveI | ACCTGC | 2 cut(s) | 964, 1258 |
| CaiI | CAGNNNCTG | 2 cut(s) | 284, 464 |
| CciI | TCATGA | 2 cut(s) | 1318, 1571 |
| Cfr10I | RCCGGY | 1 cut(s) | 332 |
| Cfr13I | GGNCC | 1 cut(s) | 254 |
| Csp6I | GTAC | 2 cut(s) | 627, 1235 |
| CspAI | ACCGGT | 1 cut(s) | 332 |
| CviQI | GTAC | 2 cut(s) | 627, 1235 |
| DdeI | CTNAG | 7 cut(s) | 61, 277, 392, 1143, 1332, 1380, 1545 |
| DraI | TTTAAA | 1 cut(s) | 244 |
| Eam1104I | CTCTTC | 2 cut(s) | 303, 750 |
| EarI | CTCTTC | 2 cut(s) | 303, 750 |
| Ecl136II | GAGCTC | 1 cut(s) | 1564 |
| Eco130I | CCWWGG | 4 cut(s) | 692, 932, 1007, 1229 |
| Eco24I | GRGCYC | 2 cut(s) | 479, 1566 |
| Eco31I | GGTCTC | 1 cut(s) | 323 |
| Eco47I | GGWCC | 1 cut(s) | 254 |
| Eco53kI | GAGCTC | 1 cut(s) | 1564 |
| Eco57I | CTGAAG | 1 cut(s) | 1296 |
| Eco81I | CCTNAGG | 2 cut(s) | 1143, 1332 |
| EcoICRI | GAGCTC | 1 cut(s) | 1564 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 587 |
| EcoRII | CCWGG | 3 cut(s) | 361, 499, 1439 |
| EcoT14I | CCWWGG | 4 cut(s) | 692, 932, 1007, 1229 |
| EcoT38I | GRGCYC | 2 cut(s) | 479, 1566 |
| ErhI | CCWWGG | 4 cut(s) | 692, 932, 1007, 1229 |
| FaqI | GGGAC | 2 cut(s) | 564, 1532 |
| FauI | CCCGC | 1 cut(s) | 1085 |
| FblI | GTMKAC | 1 cut(s) | 367 |
| Fnu4HI | GCNGC | 4 cut(s) | 825, 1107, 1110, 1113 |
| FokI | GGATG | 2 cut(s) | 326, 1086 |
| FriOI | GRGCYC | 2 cut(s) | 479, 1566 |
| Fsp4HI | GCNGC | 4 cut(s) | 825, 1107, 1110, 1113 |
| FspBI | CTAG | 2 cut(s) | 630, 1008 |
| GluI | GCNGC | 4 cut(s) | 825, 1107, 1110, 1113 |
| GsaI | CCCAGC | 1 cut(s) | 104 |
| HapII | CCGG | 3 cut(s) | 205, 333, 1103 |
| HincII | GTYRAC | 1 cut(s) | 1063 |
| HindII | GTYRAC | 1 cut(s) | 1063 |
| HindIII | AAGCTT | 1 cut(s) | 72 |
| HinfI | GANTC | 6 cut(s) | 120, 227, 358, 377, 683, 1376 |
| HpaII | CCGG | 3 cut(s) | 205, 333, 1103 |
| HphI | GGTGA | 3 cut(s) | 194, 347, 398 |
| Hpy166II | GTNNAC | 6 cut(s) | 338, 368, 389, 712, 1063, 1342 |
| Hpy188I | TCNGA | 8 cut(s) | 286, 328, 466, 688, 800, 1096, 1367, 1460 |
| Hpy188III | TCNNGA | 4 cut(s) | 1176, 1319, 1331, 1572 |
| Hpy8I | GTNNAC | 6 cut(s) | 338, 368, 389, 712, 1063, 1342 |
| HpyAV | CCTTC | 3 cut(s) | 535, 632, 1477 |
| HpyCH4III | ACNGT | 1 cut(s) | 20 |
| HpyCH4IV | ACGT | 3 cut(s) | 294, 441, 1371 |
| HpyCH4V | TGCA | 7 cut(s) | 317, 445, 827, 869, 1043, 1115, 1426 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 288, 1112, 1121 |
| HpyF3I | CTNAG | 7 cut(s) | 61, 277, 392, 1143, 1332, 1380, 1545 |
| HpySE526I | ACGT | 3 cut(s) | 294, 441, 1371 |
| LmnI | GCTCC | 6 cut(s) | 102, 302, 403, 482, 1144, 1285 |
| Lsp1109I | GCAGC | 4 cut(s) | 811, 1093, 1096, 1099 |
| LweI | GCATC | 3 cut(s) | 304, 1124, 1399 |
| MaeI | CTAG | 2 cut(s) | 630, 1008 |
| MaeII | ACGT | 3 cut(s) | 294, 441, 1371 |
| MaeIII | GTNAC | 3 cut(s) | 830, 853, 1307 |
| MbiI | CCGCTC | 1 cut(s) | 305 |
| MboII | GAAGA | 6 cut(s) | 320, 488, 623, 647, 767, 1235 |
| MfeI | CAATTG | 2 cut(s) | 573, 717 |
| MflI | RGATCY | 3 cut(s) | 89, 461, 905 |
| MhlI | GDGCHC | 3 cut(s) | 400, 479, 1566 |
| MlyI | GAGTC | 1 cut(s) | 129 |
| MmeI | TCCRAC | 1 cut(s) | 935 |
| MseI | TTAA | 9 cut(s) | 50, 138, 197, 215, 243, 344, 1161, 1260, 1431 |
| MspA1I | CMGCKG | 2 cut(s) | 65, 1304 |
| MspI | CCGG | 3 cut(s) | 205, 333, 1103 |
| MspR9I | CCNGG | 4 cut(s) | 206, 363, 501, 1441 |
| MssI | GTTTAAAC | 1 cut(s) | 244 |
| MunI | CAATTG | 2 cut(s) | 573, 717 |
| MvaI | CCWGG | 3 cut(s) | 363, 501, 1441 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 288, 1112, 1121 |
| NciI | CCSGG | 1 cut(s) | 206 |
| NcoI | CCATGG | 3 cut(s) | 692, 932, 1229 |
| NlaIV | GGNNCC | 3 cut(s) | 91, 478, 1272 |
| NmuCI | GTSAC | 1 cut(s) | 1307 |
| NspI | RCATGY | 2 cut(s) | 598, 831 |
| PagI | TCATGA | 2 cut(s) | 1318, 1571 |
| PaqCI | CACCTGC | 1 cut(s) | 1258 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 804 |
| PfeI | GAWTC | 5 cut(s) | 227, 358, 377, 683, 1376 |
| PinAI | ACCGGT | 1 cut(s) | 332 |
| PkrI | GCNGC | 4 cut(s) | 826, 1108, 1111, 1114 |
| PleI | GAGTC | 1 cut(s) | 128 |
| PmeI | GTTTAAAC | 1 cut(s) | 244 |
| PpsI | GAGTC | 1 cut(s) | 128 |
| Psp124BI | GAGCTC | 1 cut(s) | 1566 |
| Psp6I | CCWGG | 3 cut(s) | 361, 499, 1439 |
| PspFI | CCCAGC | 1 cut(s) | 100 |
| PspGI | CCWGG | 3 cut(s) | 361, 499, 1439 |
| PspN4I | GGNNCC | 3 cut(s) | 91, 478, 1272 |
| PspPI | GGNCC | 1 cut(s) | 254 |
| PstNI | CAGNNNCTG | 2 cut(s) | 284, 464 |
| PsuI | RGATCY | 3 cut(s) | 89, 461, 905 |
| PvuII | CAGCTG | 2 cut(s) | 65, 1304 |
| RsaI | GTAC | 2 cut(s) | 628, 1236 |
| RsaNI | GTAC | 2 cut(s) | 627, 1235 |
| SacI | GAGCTC | 1 cut(s) | 1566 |
| SaqAI | TTAA | 9 cut(s) | 50, 138, 197, 215, 243, 344, 1161, 1260, 1431 |
| SatI | GCNGC | 4 cut(s) | 825, 1107, 1110, 1113 |
| Sau96I | GGNCC | 1 cut(s) | 254 |
| SchI | GAGTC | 1 cut(s) | 129 |
| ScrFI | CCNGG | 4 cut(s) | 206, 363, 501, 1441 |
| SduI | GDGCHC | 3 cut(s) | 400, 479, 1566 |
| SfaNI | GCATC | 3 cut(s) | 304, 1124, 1399 |
| SinI | GGWCC | 1 cut(s) | 254 |
| SsiI | CCGC | 4 cut(s) | 144, 305, 1078, 1489 |
| SspI | AATATT | 1 cut(s) | 322 |
| SspMI | CTAG | 2 cut(s) | 630, 1008 |
| SstI | GAGCTC | 1 cut(s) | 1566 |
| StyD4I | CCNGG | 4 cut(s) | 204, 361, 499, 1439 |
| StyI | CCWWGG | 4 cut(s) | 692, 932, 1007, 1229 |
| TaaI | ACNGT | 1 cut(s) | 20 |
| TaiI | ACGT | 3 cut(s) | 297, 444, 1374 |
| TaqI | TCGA | 3 cut(s) | 77, 1029, 1502 |
| TaqII | GACCGA | 1 cut(s) | 575 |
| TfiI | GAWTC | 5 cut(s) | 227, 358, 377, 683, 1376 |
| Tru1I | TTAA | 9 cut(s) | 50, 138, 197, 215, 243, 344, 1161, 1260, 1431 |
| Tru9I | TTAA | 9 cut(s) | 50, 138, 197, 215, 243, 344, 1161, 1260, 1431 |
| TscAI | CASTG | 4 cut(s) | 492, 921, 1316, 1485 |
| TseFI | GTSAC | 1 cut(s) | 1307 |
| TseI | GCWGC | 4 cut(s) | 824, 1106, 1109, 1112 |
| Tsp45I | GTSAC | 1 cut(s) | 1307 |
| TspDTI | ATGAA | 6 cut(s) | 507, 554, 696, 739, 1338, 1444 |
| TspGWI | ACGGA | 1 cut(s) | 662 |
| TspRI | CASTG | 4 cut(s) | 492, 921, 1316, 1485 |
| VpaK11BI | GGWCC | 1 cut(s) | 254 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 587 |
| XapI | RAATTY | 2 cut(s) | 46, 980 |
| XceI | RCATGY | 2 cut(s) | 598, 831 |
| XmaJI | CCTAGG | 1 cut(s) | 1007 |
| XmiI | GTMKAC | 1 cut(s) | 367 |
| XspI | CTAG | 2 cut(s) | 630, 1008 |