FvH4_7g01940

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
2317709 .. 2321142
3434 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01940.t1

Sequence Viewer

Length: 1575 bp
ATGGAAATACTCTCTTACAGTTCTGCTTCGTGCTGTGATGTTGTAAATTTAAGGTGGAACTCAGCTGTAAAAGCTTCGAGTTTTGGTGGATCCAAGCTCCCAGCTTTTAGAAAGAGTAGAGTCATCTATGCTAATTTTAATTCCGCAAGTGAGGTTGTGAGCTGTTATCATATAAATCAGTCTTTCTCAAAGAAATTAAATCACCGGGGAGGTTTAAGGTCATTAGATTCCCATGAGAAGTTTAAACAAGTTGGTCCAATTATGTCAAGTGGAAGCTCAGGCTCTGATGGCTACGTTATTGGAGCGGAAGAGGATGCAAATATTTCAGAGACCGGTGAACCATTAACGAAAGTGTTGATTCCTGGTATACCGAACGAATCCAATGGTGAACTAAGTGCTCCTATAAGCAGTTGCTTTTGGGAATGGAAGCCCAAGTTCAACGTGCATTATGAGAAAGCAGGATCTGAAAACTTGGGCTCCCCACCAGTGCTGTTTCTTCCTGGTTTTGGGGTTGGTTCATTTCACTATGAGAAGCAAATGAAGGATTTGGGACGAGATTTTAGAGTGTGGGCAATTGATTTCCTCGGTCAGGGCATGTCCTTGCCATTGGAAGACCCTGCCCCTCGTACTAGGGAAGAAGGTATGACGGACAAGAACAATCTTGCTTGGGGCTTTGGAGATGAATCTGAACCATGGGCAAGTGAGCTTGTTTACTCAATTGATTTATGGCAGGATCAAGTTCGTTATTTCATAGAAGAGGTAATCGGCGAACCTGTATATATTACTGGAAACTCACTCGGAGGGTTCGTTGCTTTATATTTTGCTGCATGTAACCCTCATTTAGTGAAAGGTGTTACATTGCTCAATGCAACTCCTTTCTGGGGATTTCTACCTAATCCCATTAGATCTCCAACACTGGCAAAATTATTCCCATGGGCAGGAACATTTCCTCTACCTGCCAATGTGAGGAAGCTCGTAGAATTTGTTTGGCAAAAGATAAGTGATCCTAGGAGTATAGCACAGATACTCGAACAAGTTTATGCAGATCATTCAACAGATGTTGACAAAGTATTTTCCCGCATAGTTGAGACATCAGAACATCCGGCTGCTGCTGCATCATTTGCTTCAATCATGTTTGCTCCTCAGGGAGAATTATCATTTAAGGAGGCTTTATCCAGATGTCAAACAAGCAACATACCAGTTTGTCTCATGTATGGGAAAGAAGACCCATGGGTACAACCTATTTGGGGTTTTCAGGTTAAGAAGCAGGTGCCTGAAGCTCCATTTTATGAGATCAGTCCAGCTGGTCACTGCCCTCATGATGAAGTTCCTGAGGTTGTGAACTACTTGTTGCGTGGGTGGATCAGAAACGTAGAATCTCAGGGTTTAGTCGCATTACCTTTGCTTGATGCCCAAGAAAGTATGCAGATTAACATTGCCAGGGATTTGGAGTTCATCAGAGATGGATCAAAAAAGTCAGTGAAGGTGCGGTTCTTTGGATCGAAGTTCTCACTTTGGGACAAGATAAGCTCTTACATCAGTTCTCAGTTTGGGAAATTAGAGCTCAAATCATGA

Protein Analysis

525

Amino Acids

58.33

Weight (kDa)

5.7

Isoelectric Point (pI)

48.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 161 - 442 3.6e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 163 - 447 2.3e-18 Alpha/beta hydrolase family
Hydrolase_4 PF12146 163 - 414 9.3e-06 Serine aminopeptidase, S33
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1258
Acc36I ACCTGC 2 cut(s) 964, 1258
AccB1I GGYRCC 1 cut(s) 1270
AccBSI CCGCTC 1 cut(s) 305
AccI GTMKAC 1 cut(s) 367
AciI CCGC 4 cut(s) 144, 305, 1078, 1489
AclWI GGATC 8 cut(s) 84, 97, 469, 741, 998, 1370, 1474, 1507
AcsI RAATTY 2 cut(s) 46, 980
AcuI CTGAAG 1 cut(s) 1296
AfaI GTAC 2 cut(s) 628, 1236
AfiI CCNNNNNNNGG 6 cut(s) 506, 589, 881, 938, 966, 1247
AgeI ACCGGT 1 cut(s) 332
AgsI TTSAA 3 cut(s) 439, 1053, 1128
AjnI CCWGG 3 cut(s) 361, 499, 1439
AloI GAACNNNNNNTCC 2 cut(s) 1436, 1468
Alw21I GWGCWC 2 cut(s) 400, 1566
Alw26I GTCTC 3 cut(s) 323, 1082, 1211
AlwI GGATC 8 cut(s) 84, 97, 469, 741, 998, 1370, 1474, 1507
AlwNI CAGNNNCTG 2 cut(s) 284, 464
ApeKI GCWGC 4 cut(s) 824, 1106, 1109, 1112
ApoI RAATTY 2 cut(s) 46, 980
AsiGI ACCGGT 1 cut(s) 332
AspA2I CCTAGG 1 cut(s) 1007
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 206
AsuHPI GGTGA 3 cut(s) 194, 347, 398
AvaII GGWCC 1 cut(s) 254
AvrII CCTAGG 1 cut(s) 1007
AxyI CCTNAGG 2 cut(s) 1143, 1332
BamHI GGATCC 1 cut(s) 89
BanI GGYRCC 1 cut(s) 1270
BanII GRGCYC 2 cut(s) 479, 1566
BbsI GAAGAC 2 cut(s) 618, 1230
Bbv12I GWGCWC 2 cut(s) 400, 1566
BbvI GCAGC 4 cut(s) 811, 1093, 1096, 1099
BccI CCATC 2 cut(s) 281, 1457
BciT130I CCWGG 3 cut(s) 363, 501, 1441
BcnI CCSGG 1 cut(s) 206
BcoDI GTCTC 3 cut(s) 323, 1082, 1211
BfaI CTAG 2 cut(s) 630, 1008
BfuAI ACCTGC 2 cut(s) 964, 1258
BglII AGATCT 1 cut(s) 905
BisI GCNGC 4 cut(s) 825, 1107, 1110, 1113
BlnI CCTAGG 1 cut(s) 1007
BlsI GCNGC 4 cut(s) 826, 1108, 1111, 1114
Bme1390I CCNGG 4 cut(s) 206, 363, 501, 1441
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 3 cut(s) 91, 478, 1272
BmrFI CCNGG 4 cut(s) 206, 363, 501, 1441
BmsI GCATC 3 cut(s) 304, 1124, 1399
BpiI GAAGAC 2 cut(s) 618, 1230
Bpu10I CCTNAGC 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 206
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 7 cut(s) 205, 583, 692, 932, 1007, 1229, 1440
BsaWI WCCGGW 1 cut(s) 332
BsaXI ACNNNNNCTCC 4 cut(s) 461, 491, 792, 822
Bsc4I CCNNNNNNNGG 6 cut(s) 506, 589, 881, 938, 966, 1247
Bse118I RCCGGY 1 cut(s) 332
Bse1I ACTGG 4 cut(s) 485, 790, 921, 1199
Bse21I CCTNAGG 2 cut(s) 1143, 1332
Bse3DI GCAATG 2 cut(s) 857, 1434
BseBI CCWGG 3 cut(s) 363, 501, 1441
BseDI CCNNGG 7 cut(s) 205, 583, 692, 932, 1007, 1229, 1440
BseGI GGATG 2 cut(s) 319, 1099
BseLI CCNNNNNNNGG 6 cut(s) 506, 589, 881, 938, 966, 1247
BseMI GCAATG 2 cut(s) 857, 1434
BseMII CTCAG 6 cut(s) 75, 291, 1157, 1323, 1394, 1559
BseNI ACTGG 4 cut(s) 485, 790, 921, 1199
BseRI GAGGAG 1 cut(s) 1131
BseXI GCAGC 4 cut(s) 811, 1093, 1096, 1099
BseYI CCCAGC 1 cut(s) 100
BshNI GGYRCC 1 cut(s) 1270
BshTI ACCGGT 1 cut(s) 332
BsiHKAI GWGCWC 2 cut(s) 400, 1566
BsiSI CCGG 3 cut(s) 205, 333, 1103
BslFI GGGAC 2 cut(s) 564, 1532
BslI CCNNNNNNNGG 6 cut(s) 506, 589, 881, 938, 966, 1247
BsmAI GTCTC 3 cut(s) 323, 1082, 1211
BsmFI GGGAC 2 cut(s) 564, 1532
Bso31I GGTCTC 1 cut(s) 323
Bsp1286I GDGCHC 3 cut(s) 400, 479, 1566
Bsp19I CCATGG 3 cut(s) 692, 932, 1229
BspACI CCGC 4 cut(s) 144, 305, 1078, 1489
BspCNI CTCAG 6 cut(s) 74, 290, 1156, 1324, 1393, 1558
BspHI TCATGA 2 cut(s) 1318, 1571
BspLI GGNNCC 3 cut(s) 91, 478, 1272
BspMI ACCTGC 2 cut(s) 964, 1258
BspPI GGATC 8 cut(s) 84, 97, 469, 741, 998, 1370, 1474, 1507
BspT107I GGYRCC 1 cut(s) 1270
BspTNI GGTCTC 1 cut(s) 323
BsrBI CCGCTC 1 cut(s) 305
BsrDI GCAATG 2 cut(s) 857, 1434
BsrFI RCCGGY 1 cut(s) 332
BsrI ACTGG 4 cut(s) 485, 790, 921, 1199
BssAI RCCGGY 1 cut(s) 332
BssECI CCNNGG 7 cut(s) 205, 583, 692, 932, 1007, 1229, 1440
BssNAI GTATAC 1 cut(s) 368
BssT1I CCWWGG 4 cut(s) 692, 932, 1007, 1229
Bst1107I GTATAC 1 cut(s) 368
Bst2UI CCWGG 3 cut(s) 363, 501, 1441
Bst4CI ACNGT 1 cut(s) 20
Bst6I CTCTTC 2 cut(s) 303, 750
BstAPI GCANNNNNTGC 1 cut(s) 1121
BstDEI CTNAG 7 cut(s) 61, 277, 392, 1143, 1332, 1380, 1545
BstDSI CCRYGG 3 cut(s) 692, 932, 1229
BstENI CCTNNNNNAGG 1 cut(s) 587
BstF5I GGATG 2 cut(s) 319, 1099
BstMAI GTCTC 3 cut(s) 323, 1082, 1211
BstMWI GCNNNNNNNGC 4 cut(s) 71, 288, 1112, 1121
BstNI CCWGG 3 cut(s) 363, 501, 1441
BstNSI RCATGY 2 cut(s) 598, 831
BstSCI CCNGG 4 cut(s) 204, 361, 499, 1439
BstV1I GCAGC 4 cut(s) 811, 1093, 1096, 1099
BstV2I GAAGAC 2 cut(s) 618, 1230
BstX2I RGATCY 3 cut(s) 89, 461, 905
BstXI CCANNNNNNTGG 1 cut(s) 1447
BstYI RGATCY 3 cut(s) 89, 461, 905
BstZ17I GTATAC 1 cut(s) 368
Bsu36I CCTNAGG 2 cut(s) 1143, 1332
BtgI CCRYGG 3 cut(s) 692, 932, 1229
BtsCI GGATG 2 cut(s) 319, 1099
BtsI GCAGTG 1 cut(s) 1309
BtsIMutI CAGTG 4 cut(s) 492, 914, 1309, 1485
BveI ACCTGC 2 cut(s) 964, 1258
CaiI CAGNNNCTG 2 cut(s) 284, 464
CciI TCATGA 2 cut(s) 1318, 1571
Cfr10I RCCGGY 1 cut(s) 332
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 2 cut(s) 627, 1235
CspAI ACCGGT 1 cut(s) 332
CviQI GTAC 2 cut(s) 627, 1235
DdeI CTNAG 7 cut(s) 61, 277, 392, 1143, 1332, 1380, 1545
DraI TTTAAA 1 cut(s) 244
Eam1104I CTCTTC 2 cut(s) 303, 750
EarI CTCTTC 2 cut(s) 303, 750
Ecl136II GAGCTC 1 cut(s) 1564
Eco130I CCWWGG 4 cut(s) 692, 932, 1007, 1229
Eco24I GRGCYC 2 cut(s) 479, 1566
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 1564
Eco57I CTGAAG 1 cut(s) 1296
Eco81I CCTNAGG 2 cut(s) 1143, 1332
EcoICRI GAGCTC 1 cut(s) 1564
EcoNI CCTNNNNNAGG 1 cut(s) 587
EcoRII CCWGG 3 cut(s) 361, 499, 1439
EcoT14I CCWWGG 4 cut(s) 692, 932, 1007, 1229
EcoT38I GRGCYC 2 cut(s) 479, 1566
ErhI CCWWGG 4 cut(s) 692, 932, 1007, 1229
FaqI GGGAC 2 cut(s) 564, 1532
FauI CCCGC 1 cut(s) 1085
FblI GTMKAC 1 cut(s) 367
Fnu4HI GCNGC 4 cut(s) 825, 1107, 1110, 1113
FokI GGATG 2 cut(s) 326, 1086
FriOI GRGCYC 2 cut(s) 479, 1566
Fsp4HI GCNGC 4 cut(s) 825, 1107, 1110, 1113
FspBI CTAG 2 cut(s) 630, 1008
GluI GCNGC 4 cut(s) 825, 1107, 1110, 1113
GsaI CCCAGC 1 cut(s) 104
HapII CCGG 3 cut(s) 205, 333, 1103
HincII GTYRAC 1 cut(s) 1063
HindII GTYRAC 1 cut(s) 1063
HindIII AAGCTT 1 cut(s) 72
HinfI GANTC 6 cut(s) 120, 227, 358, 377, 683, 1376
HpaII CCGG 3 cut(s) 205, 333, 1103
HphI GGTGA 3 cut(s) 194, 347, 398
Hpy166II GTNNAC 6 cut(s) 338, 368, 389, 712, 1063, 1342
Hpy188I TCNGA 8 cut(s) 286, 328, 466, 688, 800, 1096, 1367, 1460
Hpy188III TCNNGA 4 cut(s) 1176, 1319, 1331, 1572
Hpy8I GTNNAC 6 cut(s) 338, 368, 389, 712, 1063, 1342
HpyAV CCTTC 3 cut(s) 535, 632, 1477
HpyCH4III ACNGT 1 cut(s) 20
HpyCH4IV ACGT 3 cut(s) 294, 441, 1371
HpyCH4V TGCA 7 cut(s) 317, 445, 827, 869, 1043, 1115, 1426
HpyF10VI GCNNNNNNNGC 4 cut(s) 71, 288, 1112, 1121
HpyF3I CTNAG 7 cut(s) 61, 277, 392, 1143, 1332, 1380, 1545
HpySE526I ACGT 3 cut(s) 294, 441, 1371
LmnI GCTCC 6 cut(s) 102, 302, 403, 482, 1144, 1285
Lsp1109I GCAGC 4 cut(s) 811, 1093, 1096, 1099
LweI GCATC 3 cut(s) 304, 1124, 1399
MaeI CTAG 2 cut(s) 630, 1008
MaeII ACGT 3 cut(s) 294, 441, 1371
MaeIII GTNAC 3 cut(s) 830, 853, 1307
MbiI CCGCTC 1 cut(s) 305
MboII GAAGA 6 cut(s) 320, 488, 623, 647, 767, 1235
MfeI CAATTG 2 cut(s) 573, 717
MflI RGATCY 3 cut(s) 89, 461, 905
MhlI GDGCHC 3 cut(s) 400, 479, 1566
MlyI GAGTC 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 935
MseI TTAA 9 cut(s) 50, 138, 197, 215, 243, 344, 1161, 1260, 1431
MspA1I CMGCKG 2 cut(s) 65, 1304
MspI CCGG 3 cut(s) 205, 333, 1103
MspR9I CCNGG 4 cut(s) 206, 363, 501, 1441
MssI GTTTAAAC 1 cut(s) 244
MunI CAATTG 2 cut(s) 573, 717
MvaI CCWGG 3 cut(s) 363, 501, 1441
MwoI GCNNNNNNNGC 4 cut(s) 71, 288, 1112, 1121
NciI CCSGG 1 cut(s) 206
NcoI CCATGG 3 cut(s) 692, 932, 1229
NlaIV GGNNCC 3 cut(s) 91, 478, 1272
NmuCI GTSAC 1 cut(s) 1307
NspI RCATGY 2 cut(s) 598, 831
PagI TCATGA 2 cut(s) 1318, 1571
PaqCI CACCTGC 1 cut(s) 1258
PcsI WCGNNNNNNNCGW 1 cut(s) 804
PfeI GAWTC 5 cut(s) 227, 358, 377, 683, 1376
PinAI ACCGGT 1 cut(s) 332
PkrI GCNGC 4 cut(s) 826, 1108, 1111, 1114
PleI GAGTC 1 cut(s) 128
PmeI GTTTAAAC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 128
Psp124BI GAGCTC 1 cut(s) 1566
Psp6I CCWGG 3 cut(s) 361, 499, 1439
PspFI CCCAGC 1 cut(s) 100
PspGI CCWGG 3 cut(s) 361, 499, 1439
PspN4I GGNNCC 3 cut(s) 91, 478, 1272
PspPI GGNCC 1 cut(s) 254
PstNI CAGNNNCTG 2 cut(s) 284, 464
PsuI RGATCY 3 cut(s) 89, 461, 905
PvuII CAGCTG 2 cut(s) 65, 1304
RsaI GTAC 2 cut(s) 628, 1236
RsaNI GTAC 2 cut(s) 627, 1235
SacI GAGCTC 1 cut(s) 1566
SaqAI TTAA 9 cut(s) 50, 138, 197, 215, 243, 344, 1161, 1260, 1431
SatI GCNGC 4 cut(s) 825, 1107, 1110, 1113
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 129
ScrFI CCNGG 4 cut(s) 206, 363, 501, 1441
SduI GDGCHC 3 cut(s) 400, 479, 1566
SfaNI GCATC 3 cut(s) 304, 1124, 1399
SinI GGWCC 1 cut(s) 254
SsiI CCGC 4 cut(s) 144, 305, 1078, 1489
SspI AATATT 1 cut(s) 322
SspMI CTAG 2 cut(s) 630, 1008
SstI GAGCTC 1 cut(s) 1566
StyD4I CCNGG 4 cut(s) 204, 361, 499, 1439
StyI CCWWGG 4 cut(s) 692, 932, 1007, 1229
TaaI ACNGT 1 cut(s) 20
TaiI ACGT 3 cut(s) 297, 444, 1374
TaqI TCGA 3 cut(s) 77, 1029, 1502
TaqII GACCGA 1 cut(s) 575
TfiI GAWTC 5 cut(s) 227, 358, 377, 683, 1376
Tru1I TTAA 9 cut(s) 50, 138, 197, 215, 243, 344, 1161, 1260, 1431
Tru9I TTAA 9 cut(s) 50, 138, 197, 215, 243, 344, 1161, 1260, 1431
TscAI CASTG 4 cut(s) 492, 921, 1316, 1485
TseFI GTSAC 1 cut(s) 1307
TseI GCWGC 4 cut(s) 824, 1106, 1109, 1112
Tsp45I GTSAC 1 cut(s) 1307
TspDTI ATGAA 6 cut(s) 507, 554, 696, 739, 1338, 1444
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 4 cut(s) 492, 921, 1316, 1485
VpaK11BI GGWCC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 587
XapI RAATTY 2 cut(s) 46, 980
XceI RCATGY 2 cut(s) 598, 831
XmaJI CCTAGG 1 cut(s) 1007
XmiI GTMKAC 1 cut(s) 367
XspI CTAG 2 cut(s) 630, 1008
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.