Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8335935.1

Orthogroup ID

OG0005707

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 972

Gene Structure 972 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8335935.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 385 bp

attggaagaccctgcccctcgtactagggaagaaggtatgtcggacaagaacaatcttgcttggggctttggagatgaatccgaaccatgggcaagtgagcttgtttactccattgatttatggcaggatcaagttcgttatttcatagaagaggtaattggtgaacctgtctatattgctggaaactcactgggagggttcgttgctttatattttgctgcatgtaaccctcatttagtgaaaggtgttacattgctcaatgcaactcctttctggggatttctacctaatcccataagatctccaagactagcaaaaatatttccatgggcaggaacatttcctctacctgccaatgtcagaaagctcgtagaatttgtgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

127

Amino Acids

14.26

Weight (kDa)

4.78

Isoelectric Point (pI)

46.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13800 AT5G13800 AT5G13800 AT5G13800
fragaria_vesca	FvH4_7g01940 FvH4_7g01940
malus_domestica	MD02G1299000.v1.1 MD07G1025100.v1.1
prunus_persica	Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1
pyrus_communis	pycom02g25150 pycom02g25160 pycom07g01940
rosa_chinensis	RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891
rosa_laevigata	RLG00000030519
rosa_multiflora	Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013
rosa_roxburghii	Rroxscaffold_4G00328990
rosa_rugosa	Rorug01G0022600 Rorug01G0022700
rosa_samantha	Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700
rosa_wichuraiana	Rw1G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	359
AclWI	GGATC	1 cut(s)	136
AcsI	RAATTY	1 cut(s)	375
AfaI	GTAC	1 cut(s)	23
AfiI	CCNNNNNNNGG	3 cut(s)	88, 276, 333
AjuI	GAANNNNNNNTTGG	2 cut(s)	142, 174
AluBI	AGCT	2 cut(s)	101, 368
AluI	AGCT	2 cut(s)	101, 368
AlwI	GGATC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	219
ApoI	RAATTY	1 cut(s)	375
AsuHPI	GGTGA	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	13
BbvI	GCAGC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	25, 312
BfuAI	ACCTGC	1 cut(s)	359
BglII	AGATCT	1 cut(s)	300
BisI	GCNGC	1 cut(s)	220
BlsI	GCNGC	1 cut(s)	221
BmrI	ACTGGG	1 cut(s)	201
BmuI	ACTGGG	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	13
BsaJI	CCNNGG	2 cut(s)	87, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	88, 276, 333
Bse1I	ACTGG	1 cut(s)	196
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	2 cut(s)	87, 327
BseLI	CCNNNNNNNGG	3 cut(s)	88, 276, 333
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	206
BslI	CCNNNNNNNGG	3 cut(s)	88, 276, 333
Bsp143I	GATC	2 cut(s)	128, 300
Bsp19I	CCATGG	2 cut(s)	87, 327
BspMI	ACCTGC	1 cut(s)	359
BspPI	GGATC	1 cut(s)	136
BsrDI	GCAATG	1 cut(s)	252
BsrI	ACTGG	1 cut(s)	196
BssECI	CCNNGG	2 cut(s)	87, 327
BssMI	GATC	2 cut(s)	128, 300
BssT1I	CCWWGG	2 cut(s)	87, 327
Bst6I	CTCTTC	1 cut(s)	145
BstDSI	CCRYGG	2 cut(s)	87, 327
BstKTI	GATC	2 cut(s)	131, 303
BstMBI	GATC	2 cut(s)	128, 300
BstNSI	RCATGY	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	206
BstV2I	GAAGAC	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BtgI	CCRYGG	2 cut(s)	87, 327
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	3 cut(s)	88, 223, 328
CviJI	RGCY	3 cut(s)	67, 101, 368
CviKI_1	RGCY	3 cut(s)	67, 101, 368
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	130, 302
DpnII	GATC	2 cut(s)	128, 300
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	87, 327
EcoT14I	CCWWGG	2 cut(s)	87, 327
ErhI	CCWWGG	2 cut(s)	87, 327
FaeI	CATG	3 cut(s)	91, 226, 331
FaiI	YATR	9 cut(s)	39, 89, 122, 147, 175, 212, 224, 297, 329
FatI	CATG	3 cut(s)	87, 222, 327
Fnu4HI	GCNGC	1 cut(s)	220
Fsp4HI	GCNGC	1 cut(s)	220
FspBI	CTAG	2 cut(s)	25, 312
GluI	GCNGC	1 cut(s)	220
Hin1II	CATG	3 cut(s)	91, 226, 331
HinfI	GANTC	1 cut(s)	78
HphI	GGTGA	1 cut(s)	174
Hpy166II	GTNNAC	2 cut(s)	107, 165
Hpy188I	TCNGA	3 cut(s)	44, 83, 363
Hpy8I	GTNNAC	2 cut(s)	107, 165
HpyAV	CCTTC	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	222, 264
Hsp92II	CATG	3 cut(s)	91, 226, 331
Kzo9I	GATC	2 cut(s)	128, 300
LpnPI	CCDG	8 cut(s)	25, 111, 166, 177, 181, 260, 319, 364
Lsp1109I	GCAGC	1 cut(s)	206
MaeI	CTAG	2 cut(s)	25, 312
MaeIII	GTNAC	2 cut(s)	225, 248
MalI	GATC	2 cut(s)	130, 302
MboI	GATC	2 cut(s)	128, 300
MboII	GAAGA	3 cut(s)	18, 42, 162
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	2 cut(s)	157, 375
MmeI	TCCRAC	1 cut(s)	22
MnlI	CCTC	5 cut(s)	28, 146, 189, 241, 355
NcoI	CCATGG	2 cut(s)	87, 327
NdeII	GATC	2 cut(s)	128, 300
NlaIII	CATG	3 cut(s)	91, 226, 331
NspI	RCATGY	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	78
PkrI	GCNGC	1 cut(s)	221
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	1 cut(s)	220
Sau3AI	GATC	2 cut(s)	128, 300
SetI	ASST	8 cut(s)	38, 103, 157, 170, 248, 290, 353, 370
Sse9I	AATT	2 cut(s)	157, 375
SspI	AATATT	1 cut(s)	322
SspMI	CTAG	2 cut(s)	25, 312
StyI	CCWWGG	2 cut(s)	87, 327
TasI	AATT	2 cut(s)	157, 375
TfiI	GAWTC	1 cut(s)	78
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	1 cut(s)	219
TspDTI	ATGAA	2 cut(s)	91, 134
TspRI	CASTG	1 cut(s)	196
XapI	RAATTY	1 cut(s)	375
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	2 cut(s)	25, 312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.