Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0005707

Physical Location & Seq

Genomic Coordinates Forward (+)

5406628 .. 5791529

Gene Structure 384902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG035700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1038 bp

ATGAAGGATTTGGGACAAGATTTTAGAGTGTGGGCAATTGATTTCCTTGGCCAGGGCATGTCCTTGCCATTGGAAGACCCTGCCCCTCGTACTAGGGAAGAAGGTATGTCGGACAAGAACAATCTTGCTTGGGGCTTTGGAGATGAATCTGAACCATGGGCAAGTGAGCTTGTTTACTCCATTGATTTATGGCAGGATCAAGTTCGTTATTTCATAGAAGAGGTAATTGGTGAACCTGTCTATATTGCTGGAAACTCACTGGGAGGGTTCGTTGCTTTATATTTTGCTGCATGTAACCCTCATTTAGTGAAAGGTGTTACATTGCTCAATGCAACTCCTTTCTGGGGATTTCTACCTAATCCCATAAGATCTCCAAGACTAGCAAAAATATTTCCATGGGCAGGAACATTTCCTCTACCTGCCAATGTCAGAAAGCTCGTAGAATTTGTTTGGCAAAAGATAAGTGATCCTACGAGTATAGCACAGATACTGGAACAAGTTTATGCAGATCATTCAACAAACGTTGACAAAGTATTTTCGCGCATAGTCGAGACAGCAGAGCATCCGGCTGCTGCTGCATCATTTGCTTCAATTATGTTTGCTCCTCAGGGACAACTATCATTTAAGGAGGCTTTATCCAGATGTCAAACGAGCAACATACCAGTTTGTCTTATGTATGGGAAAGAAGACCCATGGGTACAACCTATTTGGGGTTTTCAGGTGAAGAAGCAGGTGCCTGAAGCTCTATTTTATGAGATCAGTCCAGCTGGTCACTGCCCTCATGATGAAGTTCCTGAGGTTGTGAATTACTTATTGCGTGGGTGGATCAAAAACCTAGAGTCTCAGGGTTTAGTCGCATTACCTTTGCTTGATGCCCAAGAAAGTGTGCAGATTAACATTGCGAGGGACTTGGAATTCATCAGAGATGGATCAAAAAAGTCGGTGAAGGTGCGCTTTTTTGGATCCAAGTTCTCACTTTGGGACAGGATAAGCTCTTACATCAGTTCTCACTTTGGGAAATTAGAGCTCAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

345

Amino Acids

38.83

Weight (kDa)

5.38

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	3 - 263	6.8e-14	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	5 - 268	1.7e-15	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13800 AT5G13800 AT5G13800 AT5G13800
fragaria_vesca	FvH4_7g01940 FvH4_7g01940
malus_domestica	MD02G1299000.v1.1 MD07G1025100.v1.1
prunus_persica	Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1
pyrus_communis	pycom02g25150 pycom02g25160 pycom07g01940
rosa_chinensis	RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891
rosa_laevigata	RLG00000030519
rosa_multiflora	Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013
rosa_roxburghii	Rroxscaffold_4G00328990
rosa_rugosa	Rorug01G0022600 Rorug01G0022700
rosa_samantha	Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700
rosa_wichuraiana	Rw1G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	721
Acc36I	ACCTGC	2 cut(s)	427, 721
AccB1I	GGYRCC	1 cut(s)	733
AccII	CGCG	1 cut(s)	541
AclI	AACGTT	1 cut(s)	522
AclWI	GGATC	6 cut(s)	204, 461, 833, 937, 957, 970
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	443, 914
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	2 cut(s)	91, 699
AfiI	CCNNNNNNNGG	4 cut(s)	52, 344, 401, 710
AgsI	TTSAA	2 cut(s)	516, 591
AjnI	CCWGG	1 cut(s)	51
AjuI	GAANNNNNNNTTGG	2 cut(s)	210, 242
AluBI	AGCT	6 cut(s)	169, 436, 743, 767, 993, 1027
AluI	AGCT	6 cut(s)	169, 436, 743, 767, 993, 1027
Alw21I	GWGCWC	1 cut(s)	1029
Alw26I	GTCTC	2 cut(s)	545, 846
AlwI	GGATC	6 cut(s)	204, 461, 833, 937, 957, 970
AlwNI	CAGNNNCTG	1 cut(s)	490
AoxI	GGCC	1 cut(s)	49
ApeKI	GCWGC	4 cut(s)	287, 569, 572, 575
ApoI	RAATTY	2 cut(s)	443, 914
AspLEI	GCGC	2 cut(s)	543, 954
AsuHPI	GGTGA	3 cut(s)	242, 733, 955
AxyI	CCTNAGG	2 cut(s)	606, 795
BalI	TGGCCA	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	962
BanI	GGYRCC	1 cut(s)	733
BanII	GRGCYC	1 cut(s)	1029
BbsI	GAAGAC	2 cut(s)	81, 693
Bbv12I	GWGCWC	1 cut(s)	1029
BbvI	GCAGC	4 cut(s)	274, 556, 559, 562
BccI	CCATC	1 cut(s)	920
BciT130I	CCWGG	1 cut(s)	53
BcoDI	GTCTC	2 cut(s)	545, 846
BfaI	CTAG	3 cut(s)	93, 380, 836
BfuAI	ACCTGC	2 cut(s)	427, 721
BglII	AGATCT	1 cut(s)	368
BisI	GCNGC	4 cut(s)	288, 570, 573, 576
BlsI	GCNGC	4 cut(s)	289, 571, 574, 577
Bme1390I	CCNGG	1 cut(s)	53
BmiI	GGNNCC	2 cut(s)	735, 964
BmrFI	CCNGG	1 cut(s)	53
BmrI	ACTGGG	1 cut(s)	269
BmsI	GCATC	3 cut(s)	571, 587, 862
BmuI	ACTGGG	1 cut(s)	269
BpiI	GAAGAC	2 cut(s)	81, 693
BpuEI	CTTGAG	1 cut(s)	1013
BsaJI	CCNNGG	5 cut(s)	46, 52, 155, 395, 692
BsaXI	ACNNNNNCTCC	2 cut(s)	255, 285
Bsc4I	CCNNNNNNNGG	4 cut(s)	52, 344, 401, 710
Bse1I	ACTGG	3 cut(s)	264, 495, 662
Bse21I	CCTNAGG	2 cut(s)	606, 795
Bse3DI	GCAATG	2 cut(s)	320, 897
BseBI	CCWGG	1 cut(s)	53
BseDI	CCNNGG	5 cut(s)	46, 52, 155, 395, 692
BseGI	GGATG	1 cut(s)	562
BseLI	CCNNNNNNNGG	4 cut(s)	52, 344, 401, 710
BseMI	GCAATG	2 cut(s)	320, 897
BseMII	CTCAG	3 cut(s)	620, 786, 857
BseNI	ACTGG	3 cut(s)	264, 495, 662
BseRI	GAGGAG	1 cut(s)	594
BseXI	GCAGC	4 cut(s)	274, 556, 559, 562
BsgI	GTGCAG	1 cut(s)	908
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	1 cut(s)	51
BshNI	GGYRCC	1 cut(s)	733
BsiHKAI	GWGCWC	1 cut(s)	1029
BsiSI	CCGG	1 cut(s)	566
BslFI	GGGAC	4 cut(s)	27, 624, 920, 995
BslI	CCNNNNNNNGG	4 cut(s)	52, 344, 401, 710
BsmAI	GTCTC	2 cut(s)	545, 846
BsmFI	GGGAC	4 cut(s)	27, 624, 920, 995
BsnI	GGCC	1 cut(s)	51
Bsp1286I	GDGCHC	1 cut(s)	1029
Bsp143I	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
Bsp19I	CCATGG	3 cut(s)	155, 395, 692
BspANI	GGCC	1 cut(s)	51
BspCNI	CTCAG	3 cut(s)	619, 787, 856
BspFNI	CGCG	1 cut(s)	541
BspHI	TCATGA	2 cut(s)	781, 1034
BspLI	GGNNCC	2 cut(s)	735, 964
BspMI	ACCTGC	2 cut(s)	427, 721
BspPI	GGATC	6 cut(s)	204, 461, 833, 937, 957, 970
BspT107I	GGYRCC	1 cut(s)	733
BsrDI	GCAATG	2 cut(s)	320, 897
BsrI	ACTGG	3 cut(s)	264, 495, 662
BssECI	CCNNGG	5 cut(s)	46, 52, 155, 395, 692
BssMI	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
BssT1I	CCWWGG	4 cut(s)	46, 155, 395, 692
Bst2UI	CCWGG	1 cut(s)	53
Bst6I	CTCTTC	1 cut(s)	213
BstAPI	GCANNNNNTGC	1 cut(s)	584
BstDEI	CTNAG	3 cut(s)	606, 795, 843
BstDSI	CCRYGG	3 cut(s)	155, 395, 692
BstENI	CCTNNNNNAGG	1 cut(s)	50
BstF5I	GGATG	1 cut(s)	562
BstFNI	CGCG	1 cut(s)	541
BstHHI	GCGC	2 cut(s)	543, 954
BstKTI	GATC	8 cut(s)	199, 371, 469, 511, 759, 828, 932, 965
BstMAI	GTCTC	2 cut(s)	545, 846
BstMBI	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
BstMWI	GCNNNNNNNGC	2 cut(s)	575, 584
BstNI	CCWGG	1 cut(s)	53
BstNSI	RCATGY	2 cut(s)	61, 294
BstSCI	CCNGG	1 cut(s)	51
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	4 cut(s)	274, 556, 559, 562
BstV2I	GAAGAC	2 cut(s)	81, 693
BstX2I	RGATCY	2 cut(s)	368, 962
BstYI	RGATCY	2 cut(s)	368, 962
Bsu36I	CCTNAGG	2 cut(s)	606, 795
BsuRI	GGCC	1 cut(s)	51
BtgI	CCRYGG	3 cut(s)	155, 395, 692
BtsCI	GGATG	1 cut(s)	562
BtsI	GCAGTG	1 cut(s)	772
BtsIMutI	CAGTG	2 cut(s)	257, 772
BveI	ACCTGC	2 cut(s)	427, 721
CaiI	CAGNNNCTG	1 cut(s)	490
CciI	TCATGA	2 cut(s)	781, 1034
CfoI	GCGC	2 cut(s)	543, 954
Csp6I	GTAC	2 cut(s)	90, 698
CviAII	CATG	7 cut(s)	58, 156, 291, 396, 693, 782, 1035
CviQI	GTAC	2 cut(s)	90, 698
DdeI	CTNAG	3 cut(s)	606, 795, 843
DpnI	GATC	8 cut(s)	198, 370, 468, 510, 758, 827, 931, 964
DpnII	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Ecl136II	GAGCTC	1 cut(s)	1027
Eco130I	CCWWGG	4 cut(s)	46, 155, 395, 692
Eco24I	GRGCYC	1 cut(s)	1029
Eco53kI	GAGCTC	1 cut(s)	1027
Eco57I	CTGAAG	1 cut(s)	759
Eco81I	CCTNAGG	2 cut(s)	606, 795
EcoICRI	GAGCTC	1 cut(s)	1027
EcoNI	CCTNNNNNAGG	1 cut(s)	50
EcoRI	GAATTC	1 cut(s)	914
EcoRII	CCWGG	1 cut(s)	51
EcoT14I	CCWWGG	4 cut(s)	46, 155, 395, 692
EcoT38I	GRGCYC	1 cut(s)	1029
ErhI	CCWWGG	4 cut(s)	46, 155, 395, 692
FaeI	CATG	7 cut(s)	61, 159, 294, 399, 696, 785, 1038
FalI	AAGNNNNNCTT	2 cut(s)	938, 970
FaqI	GGGAC	4 cut(s)	27, 624, 920, 995
FatI	CATG	7 cut(s)	57, 155, 290, 395, 692, 781, 1034
Fnu4HI	GCNGC	4 cut(s)	288, 570, 573, 576
FokI	GGATG	1 cut(s)	549
FriOI	GRGCYC	1 cut(s)	1029
Fsp4HI	GCNGC	4 cut(s)	288, 570, 573, 576
FspBI	CTAG	3 cut(s)	93, 380, 836
GlaI	GCGC	2 cut(s)	542, 953
GluI	GCNGC	4 cut(s)	288, 570, 573, 576
HaeIII	GGCC	1 cut(s)	51
HapII	CCGG	1 cut(s)	566
HhaI	GCGC	2 cut(s)	543, 954
Hin1II	CATG	7 cut(s)	61, 159, 294, 399, 696, 785, 1038
Hin6I	GCGC	2 cut(s)	541, 952
HinP1I	GCGC	2 cut(s)	541, 952
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	2 cut(s)	146, 839
HpaII	CCGG	1 cut(s)	566
HphI	GGTGA	3 cut(s)	242, 733, 955
Hpy166II	GTNNAC	3 cut(s)	175, 233, 526
Hpy188I	TCNGA	4 cut(s)	112, 151, 431, 923
Hpy188III	TCNNGA	5 cut(s)	550, 639, 782, 794, 1035
Hpy8I	GTNNAC	3 cut(s)	175, 233, 526
HpyAV	CCTTC	2 cut(s)	95, 940
HpyCH4IV	ACGT	1 cut(s)	522
HpyCH4V	TGCA	5 cut(s)	290, 332, 506, 578, 889
HpyF10VI	GCNNNNNNNGC	2 cut(s)	575, 584
HpyF3I	CTNAG	3 cut(s)	606, 795, 843
HpySE526I	ACGT	1 cut(s)	522
Hsp92II	CATG	7 cut(s)	61, 159, 294, 399, 696, 785, 1038
HspAI	GCGC	2 cut(s)	541, 952
Kzo9I	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
LmnI	GCTCC	1 cut(s)	607
Lsp1109I	GCAGC	4 cut(s)	274, 556, 559, 562
LweI	GCATC	3 cut(s)	571, 587, 862
MaeI	CTAG	3 cut(s)	93, 380, 836
MaeII	ACGT	1 cut(s)	522
MaeIII	GTNAC	3 cut(s)	293, 316, 770
MalI	GATC	8 cut(s)	198, 370, 468, 510, 758, 827, 931, 964
MboI	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
MboII	GAAGA	5 cut(s)	86, 110, 230, 698, 736
MfeI	CAATTG	1 cut(s)	36
MflI	RGATCY	2 cut(s)	368, 962
MhlI	GDGCHC	1 cut(s)	1029
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	7 cut(s)	36, 225, 443, 591, 805, 914, 1019
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	848
MmeI	TCCRAC	1 cut(s)	90
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	2 cut(s)	624, 894
Msp20I	TGGCCA	1 cut(s)	51
MspA1I	CMGCKG	1 cut(s)	767
MspI	CCGG	1 cut(s)	566
MspR9I	CCNGG	1 cut(s)	53
MunI	CAATTG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	53
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	2 cut(s)	575, 584
NcoI	CCATGG	3 cut(s)	155, 395, 692
NdeII	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
NlaIII	CATG	7 cut(s)	61, 159, 294, 399, 696, 785, 1038
NlaIV	GGNNCC	2 cut(s)	735, 964
NmuCI	GTSAC	1 cut(s)	770
NspI	RCATGY	2 cut(s)	61, 294
PagI	TCATGA	2 cut(s)	781, 1034
PaqCI	CACCTGC	1 cut(s)	721
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	4 cut(s)	289, 571, 574, 577
PleI	GAGTC	1 cut(s)	847
PpsI	GAGTC	1 cut(s)	847
Psp124BI	GAGCTC	1 cut(s)	1029
Psp1406I	AACGTT	1 cut(s)	522
Psp6I	CCWGG	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	735, 964
PstNI	CAGNNNCTG	1 cut(s)	490
PsuI	RGATCY	2 cut(s)	368, 962
PvuII	CAGCTG	1 cut(s)	767
RsaI	GTAC	2 cut(s)	91, 699
RsaNI	GTAC	2 cut(s)	90, 698
SacI	GAGCTC	1 cut(s)	1029
SaqAI	TTAA	2 cut(s)	624, 894
SatI	GCNGC	4 cut(s)	288, 570, 573, 576
Sau3AI	GATC	8 cut(s)	196, 368, 466, 508, 756, 825, 929, 962
SchI	GAGTC	1 cut(s)	848
ScrFI	CCNGG	1 cut(s)	53
SduI	GDGCHC	1 cut(s)	1029
SfaNI	GCATC	3 cut(s)	571, 587, 862
SmlI	CTYRAG	1 cut(s)	1028
SmoI	CTYRAG	1 cut(s)	1028
Sse9I	AATT	7 cut(s)	36, 225, 443, 591, 805, 914, 1019
SspI	AATATT	1 cut(s)	390
SspMI	CTAG	3 cut(s)	93, 380, 836
SstI	GAGCTC	1 cut(s)	1029
StyD4I	CCNGG	1 cut(s)	51
StyI	CCWWGG	4 cut(s)	46, 155, 395, 692
TaiI	ACGT	1 cut(s)	525
TaqI	TCGA	1 cut(s)	549
TasI	AATT	7 cut(s)	36, 225, 443, 591, 805, 914, 1019
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	624, 894
Tru9I	TTAA	2 cut(s)	624, 894
TscAI	CASTG	2 cut(s)	264, 779
TseFI	GTSAC	1 cut(s)	770
TseI	GCWGC	4 cut(s)	287, 569, 572, 575
Tsp45I	GTSAC	1 cut(s)	770
TspDTI	ATGAA	5 cut(s)	17, 159, 202, 801, 907
TspRI	CASTG	2 cut(s)	264, 779
XagI	CCTNNNNNAGG	1 cut(s)	50
XapI	RAATTY	2 cut(s)	443, 914
XceI	RCATGY	2 cut(s)	61, 294
XspI	CTAG	3 cut(s)	93, 380, 836

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.