Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005707

Physical Location & Seq

Genomic Coordinates Reverse (-)

3812618 .. 3815558

Gene Structure 2941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0022700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGAAATTGGTATTGGTTGCCATGATATGGCTAATCATTGCCGTTCAGGTATTGGTTGCCACAAGTGTTATCCAAATATTACAGGATGTGATGCACCTCATGAGTTGGGTTTCAATTATGAGTATCCTGGTAATGTTTCTTTTAACGGGGCTAAATGGATTCAATTTCTCATAGTTTCAATGTGGTTGCAGGAATCACTGTTGCAAATTCTGCCCAGACAAGGAATGAATGTTAAAGATAATAGTAACAATGCACACAGCAAGAATTCAAGATATCCAACCCTTAGAAAACGACCTCCAAATCAAAGTGCAGATACATTACCTATACTAACCGCAAGCATTACCCCTGGAACTGTGTTGATCATTCGGGCTGGAAGTATAATTAAGCTGAACCCTAACGACAATATACCCGCAGCATCGTGCGGGCCGCAATATCTAGTATCAGACTATTTTCCTGTGGTCTGCCGGAAAATCCAGGACTTGATTCTATCTTGGTGCCAAGCCAACAGGTTCCCTTTCAGAAAAAGAAGCTTTCAGTTTGTGCGTTTGAACTTTGAAGTGGCCTTCAAAGTGCTGCATGAAAAGATTAAGACCTTATATGTGGGCAATGACTTTATTGGAGATGTTCCTTTAACAAAGAAAATTCTTGCTGCATTAACTACAGGTGCTCTAGCAATCAGTGGCAAATCAACTGATCTTGTAAAAGTTAAGACTTCAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

240

Amino Acids

26.65

Weight (kDa)

9.37

Isoelectric Point (pI)

38.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13800 AT5G13800 AT5G13800 AT5G13800
fragaria_vesca	FvH4_7g01940 FvH4_7g01940
malus_domestica	MD02G1299000.v1.1 MD07G1025100.v1.1
prunus_persica	Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1
pyrus_communis	pycom02g25150 pycom02g25160 pycom07g01940
rosa_chinensis	RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891
rosa_laevigata	RLG00000030519
rosa_multiflora	Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013
rosa_roxburghii	Rroxscaffold_4G00328990
rosa_rugosa	Rorug01G0022600 Rorug01G0022700
rosa_samantha	Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700
rosa_wichuraiana	Rw1G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	495
AccB7I	CCANNNNNTGG	1 cut(s)	28
AciI	CCGC	4 cut(s)	333, 411, 423, 428
AcsI	RAATTY	3 cut(s)	207, 265, 642
AfiI	CCNNNNNNNGG	2 cut(s)	28, 221
AgsI	TTSAA	8 cut(s)	115, 164, 180, 270, 550, 557, 568, 717
AjnI	CCWGG	3 cut(s)	127, 346, 474
AjuI	GAANNNNNNNTTGG	1 cut(s)	29
AluBI	AGCT	3 cut(s)	388, 531, 720
AluI	AGCT	3 cut(s)	388, 531, 720
Alw21I	GWGCWC	1 cut(s)	670
AoxI	GGCC	2 cut(s)	425, 561
ApeKI	GCWGC	3 cut(s)	413, 574, 650
ApoI	RAATTY	3 cut(s)	207, 265, 642
AspS9I	GGNCC	1 cut(s)	425
BanI	GGYRCC	1 cut(s)	495
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	425, 561, 637
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	3 cut(s)	129, 348, 476
BciVI	GTATCC	1 cut(s)	135
BclI	TGATCA	1 cut(s)	360
BfaI	CTAG	2 cut(s)	437, 671
BfmI	CTRYAG	1 cut(s)	660
BfuI	GTATCC	1 cut(s)	135
BisI	GCNGC	4 cut(s)	414, 428, 575, 651
BlsI	GCNGC	4 cut(s)	415, 429, 576, 652
Bme1390I	CCNGG	3 cut(s)	129, 348, 476
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	2 cut(s)	497, 512
BmrFI	CCNGG	3 cut(s)	129, 348, 476
BmsI	GCATC	2 cut(s)	82, 425
BsaJI	CCNNGG	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 221
Bse3DI	GCAATG	2 cut(s)	37, 613
BseBI	CCWGG	3 cut(s)	129, 348, 476
BseDI	CCNNGG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	92
BseLI	CCNNNNNNNGG	2 cut(s)	28, 221
BseMI	GCAATG	2 cut(s)	37, 613
BseXI	GCAGC	3 cut(s)	425, 561, 637
BsgI	GTGCAG	1 cut(s)	330
BshFI	GGCC	2 cut(s)	427, 563
BshNI	GGYRCC	1 cut(s)	495
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	466
BslI	CCNNNNNNNGG	2 cut(s)	28, 221
BsnI	GGCC	2 cut(s)	427, 563
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	2 cut(s)	360, 694
BspACI	CCGC	4 cut(s)	333, 411, 423, 428
BspANI	GGCC	2 cut(s)	427, 563
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	497, 512
BspT107I	GGYRCC	1 cut(s)	495
BsrDI	GCAATG	2 cut(s)	37, 613
BssECI	CCNNGG	1 cut(s)	346
BssMI	GATC	2 cut(s)	360, 694
Bst2UI	CCWGG	3 cut(s)	129, 348, 476
Bst4CI	ACNGT	2 cut(s)	201, 355
BstAPI	GCANNNNNTGC	1 cut(s)	211
BstC8I	GCNNGC	2 cut(s)	337, 425
BstDEI	CTNAG	1 cut(s)	284
BstF5I	GGATG	1 cut(s)	92
BstKTI	GATC	2 cut(s)	363, 697
BstMBI	GATC	2 cut(s)	360, 694
BstMWI	GCNNNNNNNGC	1 cut(s)	211
BstNI	CCWGG	3 cut(s)	129, 348, 476
BstSCI	CCNGG	3 cut(s)	127, 346, 474
BstSFI	CTRYAG	1 cut(s)	660
BstV1I	GCAGC	3 cut(s)	425, 561, 637
BsuI	GTATCC	1 cut(s)	135
BsuRI	GGCC	2 cut(s)	427, 563
BtsCI	GGATG	1 cut(s)	92
BtsIMutI	CAGTG	2 cut(s)	197, 685
Cac8I	GCNNGC	2 cut(s)	337, 425
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	425
CviAII	CATG	3 cut(s)	23, 101, 578
CviJI	RGCY	9 cut(s)	32, 152, 371, 388, 427, 503, 531, 563, 720
CviKI_1	RGCY	9 cut(s)	32, 152, 371, 388, 427, 503, 531, 563, 720
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	2 cut(s)	362, 696
DpnII	GATC	2 cut(s)	360, 694
Eco32I	GATATC	1 cut(s)	275
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	3 cut(s)	127, 346, 474
EcoRV	GATATC	1 cut(s)	275
FaeI	CATG	3 cut(s)	26, 104, 581
FatI	CATG	3 cut(s)	22, 100, 577
FauI	CCCGC	2 cut(s)	416, 418
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	4 cut(s)	414, 428, 575, 651
FokI	GGATG	1 cut(s)	99
Fsp4HI	GCNGC	4 cut(s)	414, 428, 575, 651
FspBI	CTAG	2 cut(s)	437, 671
GluI	GCNGC	4 cut(s)	414, 428, 575, 651
HaeIII	GGCC	2 cut(s)	427, 563
HapII	CCGG	1 cut(s)	466
Hin1II	CATG	3 cut(s)	26, 104, 581
HindIII	AAGCTT	1 cut(s)	529
HinfI	GANTC	3 cut(s)	160, 194, 484
HpaII	CCGG	1 cut(s)	466
Hpy188I	TCNGA	2 cut(s)	445, 521
Hpy188III	TCNNGA	2 cut(s)	101, 270
HpyAV	CCTTC	1 cut(s)	574
HpyCH4III	ACNGT	2 cut(s)	201, 355
HpyCH4V	TGCA	7 cut(s)	95, 190, 205, 254, 311, 577, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	211
HpyF3I	CTNAG	1 cut(s)	284
Hsp92II	CATG	3 cut(s)	26, 104, 581
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 694
Lsp1109I	GCAGC	3 cut(s)	425, 561, 637
LweI	GCATC	2 cut(s)	82, 425
MaeI	CTAG	2 cut(s)	437, 671
MaeIII	GTNAC	1 cut(s)	245
MalI	GATC	2 cut(s)	362, 696
MboI	GATC	2 cut(s)	360, 694
MhlI	GDGCHC	1 cut(s)	670
MluCI	AATT	7 cut(s)	6, 115, 164, 207, 265, 381, 642
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	2 cut(s)	108, 306
MseI	TTAA	7 cut(s)	144, 234, 384, 588, 632, 656, 708
MspI	CCGG	1 cut(s)	466
MspR9I	CCNGG	3 cut(s)	129, 348, 476
MvaI	CCWGG	3 cut(s)	129, 348, 476
MwoI	GCNNNNNNNGC	1 cut(s)	211
NdeII	GATC	2 cut(s)	360, 694
NlaIII	CATG	3 cut(s)	26, 104, 581
NlaIV	GGNNCC	2 cut(s)	497, 512
PagI	TCATGA	1 cut(s)	100
PfeI	GAWTC	3 cut(s)	160, 194, 484
PflMI	CCANNNNNTGG	1 cut(s)	28
PfoI	TCCNGGA	1 cut(s)	474
PkrI	GCNGC	4 cut(s)	415, 429, 576, 652
Psp6I	CCWGG	3 cut(s)	127, 346, 474
PspGI	CCWGG	3 cut(s)	127, 346, 474
PspN4I	GGNNCC	2 cut(s)	497, 512
PspPI	GGNCC	1 cut(s)	425
SaqAI	TTAA	7 cut(s)	144, 234, 384, 588, 632, 656, 708
SatI	GCNGC	4 cut(s)	414, 428, 575, 651
Sau3AI	GATC	2 cut(s)	360, 694
Sau96I	GGNCC	1 cut(s)	425
ScrFI	CCNGG	3 cut(s)	129, 348, 476
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	82, 425
SfcI	CTRYAG	1 cut(s)	660
Sse9I	AATT	7 cut(s)	6, 115, 164, 207, 265, 381, 642
SsiI	CCGC	4 cut(s)	333, 411, 423, 428
SspI	AATATT	1 cut(s)	79
SspMI	CTAG	2 cut(s)	437, 671
StyD4I	CCNGG	3 cut(s)	127, 346, 474
TaaI	ACNGT	2 cut(s)	201, 355
TasI	AATT	7 cut(s)	6, 115, 164, 207, 265, 381, 642
TauI	GCSGC	1 cut(s)	430
TfiI	GAWTC	3 cut(s)	160, 194, 484
Tru1I	TTAA	7 cut(s)	144, 234, 384, 588, 632, 656, 708
Tru9I	TTAA	7 cut(s)	144, 234, 384, 588, 632, 656, 708
TscAI	CASTG	2 cut(s)	204, 685
TseI	GCWGC	3 cut(s)	413, 574, 650
TspDTI	ATGAA	2 cut(s)	242, 594
TspRI	CASTG	2 cut(s)	204, 685
Van91I	CCANNNNNTGG	1 cut(s)	28
XapI	RAATTY	3 cut(s)	207, 265, 642
XspI	CTAG	2 cut(s)	437, 671

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.