Rh1AG037000

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
6498018 .. 6539042
41025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG037000.1

Sequence Viewer

Length: 1674 bp
ATGCCCTTCAGATTTTGTACTTCAGCACTTGCCATCCATTTGGATTTTCTCGGCAATCAATTACCGGGGCGTGACAATTTCCTCCAAATGACCATTGTTTTTCCATTTATTTATGGACAGTGTGCCATTATCATGTTGGATCTGACTGCTCATCTGACATACAAGAATGTTCCGACATGGCATCGTTACCTATGCAGAACATTGAACCTTCCACAAACGCACCCCAACTGTAATGAACCTTCTCTGCTCACTTTGAAGAATACAATTTCTGGGCATGGAAATACTTCTTTCTCAAAGAAACTAAATCACCGGGGAGGTTTTAAGGCATTAAACTCCCATGAGAAGTTTAAACAAGTTGGTCCAATTCTATCAAGTAGAAGCTCTGATGGCTACGTAATTGGTGTGGAAGAGGATGCAAATATTTCAGAAACTGGGGAATCAGTAACTAAAGTTTTGATTCCTGGTGTACCGGATGAATCCAATGGTGAAATATGTGCTCCTATAAGTAGTTGCTTTTGGGAATGGAAGCCCAAATTCAATGTGCATTATGAGAAAGCAGGATCTGAAAACTTAGGCTCCCCACCAGTGCTGTTTCTTCCTGGTTTTGGGGTTGGTTCATTTCACTATGAGAAGCAAATGAAGGATTTGGGACGAGATTTTAGAGTGTGGGCAATTGATTTCCTTGGCCAGGGCATGTCCTTGCCATTGGAAGACCCTGCCCCTCGTACTAGGGAAGAAGGTATGTCGGACAAGAACAATCTTGCTTGGGGCTTTGGAGATGAATCCGAACCATGGGCAAGTGAGCTTGTTTACTCCATTGATTTATGGCAGGATCAAGTTCGTTATTTCATAGAAGAGGTAATTGGTGAACCTGTCTATATTGCTGGAAACTCACTGGGAGGGTTCGTTGCTTTATATTTTGCTGCATGTAACCCTCATTTAGTGAAAGGTGTTACATTGCTCAATGCAACTCCTTTCTGGGGATTTCTACCTAATCCCATAAGATCTCCAAGACTAGCAAAAATATTTCCATGGGCAGGAACATTTCCTCTACCTGCCAATGTCAGAAAGCTCGTAGAATTTGTTTGGCAAAAGATCAGTGATCCTAGGAGTATAGTGCAGATACTGGAACAAGTTTATGCTGATCATTCAACAAACATTGACAAAGTATTTTCCCGCATAGTCGAGACAGCAGAACATCCGGCTGCTGCTGCATCATTTGCTTCAATTATGTTTGCTCCTAAGGGACAATTATCATTTAACGAGGCTTTATCCAGTTGTCAAATGAGCAACATACCAGTTTGTCTTATGTATGGGAAAGAAGACCCATGGGTGCAACCTATTTGGGGTTTTCAGGTGAAGAAGCAGGTGCCTGAAGCTCTCTTTTATGAGATCAGTCCAGCTGGTCACTGCCCTCATGATGAAGTTCCTGAGGTTGTGAATTACTTATTGCGTGGGTGGATCAAAAACCTAGAGTCTCAAGGTTTAGTCCCATTACCTTTGCTTGATGCCCAAGAAAGTGTGCAGATTAACATTGCGAGGGACTTGGAATTCATCAGAGATGGATCAAAAAAGTTGGTGAAGGTGCGCTTTTATGGATCCAAGTTCTCACGTTGGGACAGGATAAGCTCTTACATCAGTTCTCACTTTGGGAAATTAGAGCTCAAGTTATGA

Protein Analysis

557

Amino Acids

62.62

Weight (kDa)

6.23

Isoelectric Point (pI)

43.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 194 - 475 1.6e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 196 - 480 1.2e-18 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1357
Acc36I ACCTGC 2 cut(s) 1063, 1357
AccB1I GGYRCC 1 cut(s) 1369
AciI CCGC 1 cut(s) 1177
AclWI GGATC 8 cut(s) 147, 568, 840, 1097, 1469, 1573, 1593, 1606
AcoI YGGCCR 1 cut(s) 685
AcsI RAATTY 3 cut(s) 533, 1079, 1550
AcuI CTGAAG 2 cut(s) 6, 1395
AfaI GTAC 3 cut(s) 19, 468, 727
AfiI CCNNNNNNNGG 6 cut(s) 605, 688, 792, 980, 1037, 1346
AgsI TTSAA 5 cut(s) 205, 256, 538, 1152, 1227
AjnI CCWGG 3 cut(s) 460, 598, 687
AjuI GAANNNNNNNTTGG 2 cut(s) 846, 878
AluBI AGCT 7 cut(s) 381, 805, 1072, 1379, 1403, 1629, 1663
AluI AGCT 7 cut(s) 381, 805, 1072, 1379, 1403, 1629, 1663
Alw21I GWGCWC 2 cut(s) 499, 1665
Alw26I GTCTC 2 cut(s) 1181, 1482
AlwI GGATC 8 cut(s) 147, 568, 840, 1097, 1469, 1573, 1593, 1606
AlwNI CAGNNNCTG 3 cut(s) 431, 563, 1126
AoxI GGCC 1 cut(s) 685
ApeKI GCWGC 4 cut(s) 923, 1205, 1208, 1211
ApoI RAATTY 3 cut(s) 533, 1079, 1550
Asp700I GAANNNNTTC 1 cut(s) 283
AspA2I CCTAGG 1 cut(s) 1106
AspLEI GCGC 1 cut(s) 1590
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 2 cut(s) 66, 311
AsuHPI GGTGA 5 cut(s) 299, 497, 878, 1369, 1591
AvaII GGWCC 1 cut(s) 359
AvrII CCTAGG 1 cut(s) 1106
AxyI CCTNAGG 2 cut(s) 1242, 1431
BalI TGGCCA 1 cut(s) 687
BamHI GGATCC 1 cut(s) 1598
BanI GGYRCC 1 cut(s) 1369
BanII GRGCYC 1 cut(s) 1665
BarI GAAGNNNNNNTAC 2 cut(s) 223, 255
BbsI GAAGAC 2 cut(s) 717, 1329
Bbv12I GWGCWC 2 cut(s) 499, 1665
BbvI GCAGC 4 cut(s) 910, 1192, 1195, 1198
BccI CCATC 3 cut(s) 41, 380, 1556
BciT130I CCWGG 3 cut(s) 462, 600, 689
BclI TGATCA 1 cut(s) 1144
BcnI CCSGG 2 cut(s) 66, 311
BcoDI GTCTC 2 cut(s) 1181, 1482
BfaI CTAG 4 cut(s) 729, 1016, 1107, 1472
BfuAI ACCTGC 2 cut(s) 1063, 1357
BglII AGATCT 1 cut(s) 1004
BisI GCNGC 4 cut(s) 924, 1206, 1209, 1212
BlnI CCTAGG 1 cut(s) 1106
BlsI GCNGC 4 cut(s) 925, 1207, 1210, 1213
Bme1390I CCNGG 5 cut(s) 66, 311, 462, 600, 689
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 3 cut(s) 577, 1371, 1600
BmrFI CCNGG 5 cut(s) 66, 311, 462, 600, 689
BmrI ACTGGG 2 cut(s) 441, 905
BmsI GCATC 4 cut(s) 190, 403, 1223, 1498
BmuI ACTGGG 2 cut(s) 441, 905
BpiI GAAGAC 2 cut(s) 717, 1329
BpuEI CTTGAG 2 cut(s) 1464, 1649
BpuMI CCSGG 2 cut(s) 66, 311
BsaAI YACGTR 1 cut(s) 394
BsaJI CCNNGG 8 cut(s) 65, 310, 682, 688, 791, 1031, 1106, 1328
BsaWI WCCGGW 1 cut(s) 469
BsaXI ACNNNNNCTCC 4 cut(s) 560, 590, 891, 921
Bsc4I CCNNNNNNNGG 6 cut(s) 605, 688, 792, 980, 1037, 1346
Bse1I ACTGG 6 cut(s) 436, 584, 900, 1131, 1275, 1298
Bse21I CCTNAGG 2 cut(s) 1242, 1431
Bse3DI GCAATG 2 cut(s) 956, 1533
BseBI CCWGG 3 cut(s) 462, 600, 689
BseDI CCNNGG 8 cut(s) 65, 310, 682, 688, 791, 1031, 1106, 1328
BseGI GGATG 4 cut(s) 33, 418, 478, 1198
BseLI CCNNNNNNNGG 6 cut(s) 605, 688, 792, 980, 1037, 1346
BseMI GCAATG 2 cut(s) 956, 1533
BseMII CTCAG 1 cut(s) 1422
BseNI ACTGG 6 cut(s) 436, 584, 900, 1131, 1275, 1298
BseXI GCAGC 4 cut(s) 910, 1192, 1195, 1198
BsgI GTGCAG 2 cut(s) 1139, 1544
BshFI GGCC 1 cut(s) 687
BshNI GGYRCC 1 cut(s) 1369
BsiHKAI GWGCWC 2 cut(s) 499, 1665
BsiSI CCGG 4 cut(s) 65, 310, 470, 1202
BslFI GGGAC 5 cut(s) 663, 1260, 1475, 1556, 1631
BslI CCNNNNNNNGG 6 cut(s) 605, 688, 792, 980, 1037, 1346
BsmAI GTCTC 2 cut(s) 1181, 1482
BsmFI GGGAC 5 cut(s) 663, 1260, 1475, 1556, 1631
BsnI GGCC 1 cut(s) 687
Bsp1286I GDGCHC 2 cut(s) 499, 1665
Bsp19I CCATGG 3 cut(s) 791, 1031, 1328
BspACI CCGC 1 cut(s) 1177
BspANI GGCC 1 cut(s) 687
BspCNI CTCAG 1 cut(s) 1423
BspHI TCATGA 1 cut(s) 1417
BspLI GGNNCC 3 cut(s) 577, 1371, 1600
BspMI ACCTGC 2 cut(s) 1063, 1357
BspPI GGATC 8 cut(s) 147, 568, 840, 1097, 1469, 1573, 1593, 1606
BspT107I GGYRCC 1 cut(s) 1369
BsrDI GCAATG 2 cut(s) 956, 1533
BsrI ACTGG 6 cut(s) 436, 584, 900, 1131, 1275, 1298
BssECI CCNNGG 8 cut(s) 65, 310, 682, 688, 791, 1031, 1106, 1328
BssT1I CCWWGG 5 cut(s) 682, 791, 1031, 1106, 1328
Bst2UI CCWGG 3 cut(s) 462, 600, 689
Bst4CI ACNGT 2 cut(s) 120, 230
Bst6I CTCTTC 2 cut(s) 402, 849
BstAPI GCANNNNNTGC 1 cut(s) 1220
BstBAI YACGTR 1 cut(s) 394
BstDEI CTNAG 3 cut(s) 571, 1242, 1431
BstDSI CCRYGG 3 cut(s) 791, 1031, 1328
BstENI CCTNNNNNAGG 1 cut(s) 686
BstF5I GGATG 4 cut(s) 33, 418, 478, 1198
BstHHI GCGC 1 cut(s) 1590
BstMAI GTCTC 2 cut(s) 1181, 1482
BstMWI GCNNNNNNNGC 3 cut(s) 387, 1211, 1220
BstNI CCWGG 3 cut(s) 462, 600, 689
BstNSI RCATGY 2 cut(s) 697, 930
BstSCI CCNGG 5 cut(s) 64, 309, 460, 598, 687
BstSNI TACGTA 1 cut(s) 394
BstV1I GCAGC 4 cut(s) 910, 1192, 1195, 1198
BstV2I GAAGAC 2 cut(s) 717, 1329
BstX2I RGATCY 4 cut(s) 139, 560, 1004, 1598
BstXI CCANNNNNNTGG 1 cut(s) 40
BstYI RGATCY 4 cut(s) 139, 560, 1004, 1598
Bsu36I CCTNAGG 2 cut(s) 1242, 1431
BsuRI GGCC 1 cut(s) 687
BtgI CCRYGG 3 cut(s) 791, 1031, 1328
BtsCI GGATG 4 cut(s) 33, 418, 478, 1198
BtsI GCAGTG 1 cut(s) 1408
BtsIMutI CAGTG 5 cut(s) 125, 591, 893, 1105, 1408
BveI ACCTGC 2 cut(s) 1063, 1357
CaiI CAGNNNCTG 3 cut(s) 431, 563, 1126
CciI TCATGA 1 cut(s) 1417
CfoI GCGC 1 cut(s) 1590
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 3 cut(s) 18, 467, 726
CviQI GTAC 3 cut(s) 18, 467, 726
DdeI CTNAG 3 cut(s) 571, 1242, 1431
DraI TTTAAA 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 685
Eam1104I CTCTTC 2 cut(s) 402, 849
EarI CTCTTC 2 cut(s) 402, 849
Ecl136II GAGCTC 1 cut(s) 1663
Eco105I TACGTA 1 cut(s) 394
Eco130I CCWWGG 5 cut(s) 682, 791, 1031, 1106, 1328
Eco24I GRGCYC 1 cut(s) 1665
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 1663
Eco57I CTGAAG 2 cut(s) 6, 1395
Eco81I CCTNAGG 2 cut(s) 1242, 1431
EcoICRI GAGCTC 1 cut(s) 1663
EcoNI CCTNNNNNAGG 1 cut(s) 686
EcoRI GAATTC 1 cut(s) 1550
EcoRII CCWGG 3 cut(s) 460, 598, 687
EcoT14I CCWWGG 5 cut(s) 682, 791, 1031, 1106, 1328
EcoT38I GRGCYC 1 cut(s) 1665
ErhI CCWWGG 5 cut(s) 682, 791, 1031, 1106, 1328
FalI AAGNNNNNCTT 2 cut(s) 1574, 1606
FaqI GGGAC 5 cut(s) 663, 1260, 1475, 1556, 1631
FauI CCCGC 1 cut(s) 1184
FbaI TGATCA 1 cut(s) 1144
Fnu4HI GCNGC 4 cut(s) 924, 1206, 1209, 1212
FokI GGATG 4 cut(s) 20, 425, 485, 1185
FriOI GRGCYC 1 cut(s) 1665
Fsp4HI GCNGC 4 cut(s) 924, 1206, 1209, 1212
FspBI CTAG 4 cut(s) 729, 1016, 1107, 1472
GlaI GCGC 1 cut(s) 1589
GluI GCNGC 4 cut(s) 924, 1206, 1209, 1212
HaeIII GGCC 1 cut(s) 687
HapII CCGG 4 cut(s) 65, 310, 470, 1202
HhaI GCGC 1 cut(s) 1590
Hin6I GCGC 1 cut(s) 1588
HinP1I GCGC 1 cut(s) 1588
HinfI GANTC 5 cut(s) 437, 457, 476, 782, 1475
HpaII CCGG 4 cut(s) 65, 310, 470, 1202
HphI GGTGA 5 cut(s) 299, 497, 878, 1369, 1591
Hpy166II GTNNAC 3 cut(s) 467, 811, 869
Hpy188III TCNNGA 3 cut(s) 1186, 1418, 1430
Hpy8I GTNNAC 3 cut(s) 467, 811, 869
HpyAV CCTTC 6 cut(s) 16, 218, 249, 634, 731, 1576
HpyCH4III ACNGT 2 cut(s) 120, 230
HpyCH4IV ACGT 2 cut(s) 393, 1612
HpyCH4V TGCA 9 cut(s) 195, 416, 544, 926, 968, 1120, 1214, 1336, 1525
HpyF10VI GCNNNNNNNGC 3 cut(s) 387, 1211, 1220
HpyF3I CTNAG 3 cut(s) 571, 1242, 1431
HpySE526I ACGT 2 cut(s) 393, 1612
HspAI GCGC 1 cut(s) 1588
Ksp22I TGATCA 1 cut(s) 1144
LmnI GCTCC 3 cut(s) 502, 581, 1243
Lsp1109I GCAGC 4 cut(s) 910, 1192, 1195, 1198
LweI GCATC 4 cut(s) 190, 403, 1223, 1498
MaeI CTAG 4 cut(s) 729, 1016, 1107, 1472
MaeII ACGT 2 cut(s) 393, 1612
MaeIII GTNAC 6 cut(s) 71, 185, 442, 929, 952, 1406
MboII GAAGA 8 cut(s) 268, 419, 587, 722, 746, 866, 1334, 1372
MfeI CAATTG 1 cut(s) 672
MflI RGATCY 4 cut(s) 139, 560, 1004, 1598
MhlI GDGCHC 2 cut(s) 499, 1665
MlsI TGGCCA 1 cut(s) 687
MluNI TGGCCA 1 cut(s) 687
MlyI GAGTC 1 cut(s) 1484
MmeI TCCRAC 3 cut(s) 117, 197, 726
Mox20I TGGCCA 1 cut(s) 687
MroXI GAANNNNTTC 1 cut(s) 283
MscI TGGCCA 1 cut(s) 687
MseI TTAA 5 cut(s) 321, 329, 348, 1260, 1530
MslI CAYNNNNRTG 1 cut(s) 131
Msp20I TGGCCA 1 cut(s) 687
MspA1I CMGCKG 1 cut(s) 1403
MspI CCGG 4 cut(s) 65, 310, 470, 1202
MspR9I CCNGG 5 cut(s) 66, 311, 462, 600, 689
MssI GTTTAAAC 1 cut(s) 349
MunI CAATTG 1 cut(s) 672
MvaI CCWGG 3 cut(s) 462, 600, 689
MwoI GCNNNNNNNGC 3 cut(s) 387, 1211, 1220
NciI CCSGG 2 cut(s) 66, 311
NcoI CCATGG 3 cut(s) 791, 1031, 1328
NlaIV GGNNCC 3 cut(s) 577, 1371, 1600
NmeAIII GCCGAG 1 cut(s) 30
NmuCI GTSAC 2 cut(s) 71, 1406
NspI RCATGY 2 cut(s) 697, 930
PagI TCATGA 1 cut(s) 1417
PaqCI CACCTGC 1 cut(s) 1357
PdmI GAANNNNTTC 1 cut(s) 283
PfeI GAWTC 4 cut(s) 437, 457, 476, 782
PkrI GCNGC 4 cut(s) 925, 1207, 1210, 1213
PleI GAGTC 1 cut(s) 1483
PmeI GTTTAAAC 1 cut(s) 349
PpsI GAGTC 1 cut(s) 1483
Ppu21I YACGTR 1 cut(s) 394
Psp124BI GAGCTC 1 cut(s) 1665
Psp6I CCWGG 3 cut(s) 460, 598, 687
PspGI CCWGG 3 cut(s) 460, 598, 687
PspN4I GGNNCC 3 cut(s) 577, 1371, 1600
PspPI GGNCC 1 cut(s) 359
PstNI CAGNNNCTG 3 cut(s) 431, 563, 1126
PsuI RGATCY 4 cut(s) 139, 560, 1004, 1598
PvuII CAGCTG 1 cut(s) 1403
RsaI GTAC 3 cut(s) 19, 468, 727
RsaNI GTAC 3 cut(s) 18, 467, 726
RseI CAYNNNNRTG 1 cut(s) 131
SacI GAGCTC 1 cut(s) 1665
SaqAI TTAA 5 cut(s) 321, 329, 348, 1260, 1530
SatI GCNGC 4 cut(s) 924, 1206, 1209, 1212
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 1 cut(s) 1484
ScrFI CCNGG 5 cut(s) 66, 311, 462, 600, 689
SduI GDGCHC 2 cut(s) 499, 1665
SfaNI GCATC 4 cut(s) 190, 403, 1223, 1498
SinI GGWCC 1 cut(s) 359
SmiMI CAYNNNNRTG 1 cut(s) 131
SmlI CTYRAG 2 cut(s) 1479, 1664
SmoI CTYRAG 2 cut(s) 1479, 1664
SnaBI TACGTA 1 cut(s) 394
SsiI CCGC 1 cut(s) 1177
SspI AATATT 2 cut(s) 421, 1026
SspMI CTAG 4 cut(s) 729, 1016, 1107, 1472
SstI GAGCTC 1 cut(s) 1665
StyD4I CCNGG 5 cut(s) 64, 309, 460, 598, 687
StyI CCWWGG 5 cut(s) 682, 791, 1031, 1106, 1328
TaaI ACNGT 2 cut(s) 120, 230
TaiI ACGT 2 cut(s) 396, 1615
TaqI TCGA 1 cut(s) 1185
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 4 cut(s) 437, 457, 476, 782
Tru1I TTAA 5 cut(s) 321, 329, 348, 1260, 1530
Tru9I TTAA 5 cut(s) 321, 329, 348, 1260, 1530
TscAI CASTG 5 cut(s) 125, 591, 900, 1105, 1415
TseFI GTSAC 2 cut(s) 71, 1406
TseI GCWGC 4 cut(s) 923, 1205, 1208, 1211
Tsp45I GTSAC 2 cut(s) 71, 1406
TspDTI ATGAA 8 cut(s) 249, 489, 606, 653, 795, 838, 1437, 1543
TspRI CASTG 5 cut(s) 125, 591, 900, 1105, 1415
VpaK11BI GGWCC 1 cut(s) 359
XagI CCTNNNNNAGG 1 cut(s) 686
XapI RAATTY 3 cut(s) 533, 1079, 1550
XceI RCATGY 2 cut(s) 697, 930
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmaJI CCTAGG 1 cut(s) 1106
XmnI GAANNNNTTC 1 cut(s) 283
XspI CTAG 4 cut(s) 729, 1016, 1107, 1472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.