Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0005707

Physical Location & Seq

Genomic Coordinates Forward (+)

23207753 .. 23208759

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCTTGCTCCTCAAGGAAAATTATCCTTTAAGGAGGCTTTGTCCAGATGTCAAATGAACAACACACCGATTTGTCTTATGTATGGAAAAGAAGATCCATGGGTGAAACCTATTTGGGGCCTTCAGGTGAAGCAACAAGTGCCTGAAGCTCCATATTACGAGATCAGTCCAGCTGGTCACTGCCCTCACGATGAAGTTCCTGAGGTTGTGAATTACTTATTACGCGGGTGGATCAAAAACCTAGAGAGTCGGGGTTTAGTTGCATTGCCTTTGATTGATGTCCCAGAAGGTACGCAGAACAACATTGCCAGGGACTTGGAATTTGTGAGAGATGGATCGAAAAAGTCAGTAAACGTTCGGTTCTTTGCATCCAAGTTCTCACTTTGGGACATGATCAGTTCTTATATCAGATCCCCCTTTCGGAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

144

Amino Acids

16.38

Weight (kDa)

8.79

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13800 AT5G13800 AT5G13800 AT5G13800
fragaria_vesca	FvH4_7g01940 FvH4_7g01940
malus_domestica	MD02G1299000.v1.1 MD07G1025100.v1.1
prunus_persica	Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1
pyrus_communis	pycom02g25150 pycom02g25160 pycom07g01940
rosa_chinensis	RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891
rosa_laevigata	RLG00000030519
rosa_multiflora	Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013
rosa_roxburghii	Rroxscaffold_4G00328990
rosa_rugosa	Rorug01G0022600 Rorug01G0022700
rosa_samantha	Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700
rosa_wichuraiana	Rw1G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	1 cut(s)	225
AclI	AACGTT	1 cut(s)	354
AclWI	GGATC	4 cut(s)	89, 239, 343, 405
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	107, 165
AfaI	GTAC	1 cut(s)	292
AfiI	CCNNNNNNNGG	2 cut(s)	116, 420
AjnI	CCWGG	1 cut(s)	308
AluBI	AGCT	2 cut(s)	149, 173
AluI	AGCT	2 cut(s)	149, 173
AlwI	GGATC	4 cut(s)	89, 239, 343, 405
AoxI	GGCC	1 cut(s)	118
ApoI	RAATTY	1 cut(s)	320
ArsI	GACNNNNNNTTYG	2 cut(s)	305, 337
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	115, 139
AxyI	CCTNAGG	1 cut(s)	201
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	310
BclI	TGATCA	1 cut(s)	393
BfaI	CTAG	1 cut(s)	242
Bme1390I	CCNGG	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	1 cut(s)	119
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	98, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	26, 56
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 420
Bse21I	CCTNAGG	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	263, 303
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	2 cut(s)	98, 309
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	116, 420
BseMI	GCAATG	2 cut(s)	263, 303
BseMII	CTCAG	1 cut(s)	192
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	1 cut(s)	120
BslFI	GGGAC	3 cut(s)	266, 326, 401
BslI	CCNNNNNNNGG	2 cut(s)	116, 420
BsmFI	GGGAC	3 cut(s)	266, 326, 401
BsnI	GGCC	1 cut(s)	120
Bsp143I	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
Bsp19I	CCATGG	1 cut(s)	98
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	120
BspCNI	CTCAG	1 cut(s)	193
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	119
BspPI	GGATC	4 cut(s)	89, 239, 343, 405
BsrDI	GCAATG	2 cut(s)	263, 303
BssECI	CCNNGG	2 cut(s)	98, 309
BssMI	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
BssT1I	CCWWGG	1 cut(s)	98
Bst2UI	CCWGG	1 cut(s)	310
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	6 cut(s)	97, 165, 234, 338, 396, 413
BstMBI	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	225
BstX2I	RGATCY	2 cut(s)	94, 410
BstXI	CCANNNNNNTGG	1 cut(s)	316
BstYI	RGATCY	2 cut(s)	94, 410
Bsu36I	CCTNAGG	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	98
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
Cac8I	GCNNGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	291
CviAII	CATG	2 cut(s)	99, 391
CviJI	RGCY	4 cut(s)	38, 120, 149, 173
CviKI_1	RGCY	4 cut(s)	38, 120, 149, 173
CviQI	GTAC	1 cut(s)	291
DdeI	CTNAG	1 cut(s)	201
DpnI	GATC	6 cut(s)	96, 164, 233, 337, 395, 412
DpnII	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
Eco130I	CCWWGG	1 cut(s)	98
Eco57I	CTGAAG	2 cut(s)	107, 165
Eco81I	CCTNAGG	1 cut(s)	201
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	308
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	2 cut(s)	102, 394
FaiI	YATR	7 cut(s)	80, 84, 100, 154, 392, 405, 430
FaqI	GGGAC	3 cut(s)	266, 326, 401
FatI	CATG	2 cut(s)	98, 390
FauI	CCCGC	1 cut(s)	218
FbaI	TGATCA	1 cut(s)	393
FokI	GGATG	1 cut(s)	355
FspBI	CTAG	1 cut(s)	242
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	2 cut(s)	102, 394
HinfI	GANTC	1 cut(s)	247
HphI	GGTGA	2 cut(s)	115, 139
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	410, 423
Hpy188III	TCNNGA	3 cut(s)	45, 188, 200
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	131, 281
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	263, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	1 cut(s)	201
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	2 cut(s)	102, 394
Ksp22I	TGATCA	1 cut(s)	393
Kzo9I	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
LmnI	GCTCC	2 cut(s)	13, 154
LpnPI	CCDG	9 cut(s)	58, 110, 156, 159, 183, 213, 295, 297, 322
LweI	GCATC	1 cut(s)	377
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	176
MalI	GATC	6 cut(s)	96, 164, 233, 337, 395, 412
MboI	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
MboII	GAAGA	1 cut(s)	104
MflI	RGATCY	2 cut(s)	94, 410
MluCI	AATT	3 cut(s)	20, 211, 320
MlyI	GAGTC	1 cut(s)	256
MnlI	CCTC	4 cut(s)	21, 28, 195, 196
MseI	TTAA	1 cut(s)	30
MspA1I	CMGCKG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	139
NcoI	CCATGG	1 cut(s)	98
NdeII	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
NlaIII	CATG	2 cut(s)	102, 394
NlaIV	GGNNCC	1 cut(s)	119
NmuCI	GTSAC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	255
PpsI	GAGTC	1 cut(s)	255
Psp1406I	AACGTT	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	119
PspPI	GGNCC	1 cut(s)	118
PsuI	RGATCY	2 cut(s)	94, 410
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	292
RsaNI	GTAC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	6 cut(s)	94, 162, 231, 335, 393, 410
Sau96I	GGNCC	1 cut(s)	118
SchI	GAGTC	1 cut(s)	256
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	8 cut(s)	112, 129, 151, 175, 207, 243, 292, 357
SfaNI	GCATC	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	3 cut(s)	20, 211, 320
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	98
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	1 cut(s)	338
TasI	AATT	3 cut(s)	20, 211, 320
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	2 cut(s)	71, 207
TspRI	CASTG	1 cut(s)	185
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.