Rroxscaffold_4G00328990

Alpha/beta hydrolase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
62134622 .. 62138304
3683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00328990.1

Sequence Viewer

Length: 1485 bp
ATGGATCCAAGCTCCCAGCTTTTAGAAAAAAGTAGAGTTCTTTGTGCTAATTTTGATTCCACTAATGGGGTTGTGAGCTGTTATCGTATAAATCAGTCTTTGTCAAAGAAACTAAATCACTGGGGAGGTTTTAAGGCATTAAACTCCCATGAGAAGTTTAAACAAGTTGGTCCAATTCTATCAAGTGGAAGCTCTGATGGCTACGTAATTGGTGTGGAACAGGATGCAAATATTTCAGAAACTGGGGAATCAGTAACTAAAGTTTTGATTCCTGGTGTACCGGATGAATCCAATGGTGAAATATGTGCTCCTATAAGTAGTTCCTTTTGGGAATGGAAGCCCAAATTCAATGTGCATTATGAGAAAGCAGGATCTGAAAACTTAGGCTCCCCACCAGTGCTGTTTCTTCCTGGTTTTGGGGTTGGTTCATTTCACTATGAGAAGCAAATGAAGGATTTGGGACGAGATTTTAGAGTGTGGGCAATTGATTTCCTTGGCCAGGGCATGTCCTTGCCATTGGAAGACCCTGCCCCTCGTACTAGGGAAGAAGGTATGTCGGACAAGAACAATCTTGCTTGGGGCTTTGGAGATGAATCTGAACCATGGGCAAGTGAGCTTGTTTACTCCATAGATTTATGGCAGGATCAAGTTCGTTATTTCATAGAAGAGGTAATTGGTGAACCTGTCTATATTGCTGGAAACTCACTGGGAGGGTTCGTTGCTTTATATTTTGCTGCATGTAACCCTCATTTAGTGAAAGGTGTTACATTGCTCAATGCAACTCCTTTCTGGGGATTTCTACCTAATCCCATAAGATCTCCAAGACTAGCAAAAATATTTCCATGGGCAGGAACATTTCCTCTACCTGCCAATGTCAGAAAGCTCGTAGAATTTGTTTGGCAAAAGATAAGTGATCCTAGGAGTATAGCGCAGATACTGGAACAAGTTTATGCAGATCATTCAACAAACATTGACAAAGTATTTTCCCGCATAGTTGAGACAGCAGACCATCCGGCTGCTGCTGCATCATTTGCTTCAATTATGTTTGCTCCTAAGGGACAACTATCATTTAAGGAGGCTTTATCCAGTTGTCAAATGAGCAACATACCAGTTTGTCTTATGTATGGGAAAGAAGACCCATGGGTGCAACCTATTTGGGGTTTTCAGGTGAAGAAGCAGGTGCCTGAAGCTCTATTTTATGAGATCAGTCCAGCTGGTCACTGCCCTCATGATGAAGTTCCTGAGGTTGTGAATTACTTATTGCGTGGGTGGATCAAAAACCTAGAGTCGCAGGGTTTAGTCCCATTACCTTTGCTTGATGCCCAAGAAAGTGTGCAGATTAACATTGCGAGGGACTTGGAATTCATCAGAGATGGATCAAAAAAGTCGGTGAAGGTGCGCTTTTATGGATCCAAGTTCTCACGTTGGGACAGGATAAGCTCTTACATCAGTTCTCACTTTGGGAAATTAGAGCTCAAGTCATGA

Protein Analysis

494

Amino Acids

55.17

Weight (kDa)

5.78

Isoelectric Point (pI)

45.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Abhydrolase_1 PF00561 131 - 412 1.2e-17 alpha/beta hydrolase fold
Abhydrolase_6 PF12697 133 - 417 5.3e-19 Alpha/beta hydrolase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1168
Acc36I ACCTGC 2 cut(s) 874, 1168
AccB1I GGYRCC 1 cut(s) 1180
AciI CCGC 1 cut(s) 988
AclWI GGATC 8 cut(s) 12, 379, 651, 908, 1280, 1384, 1404, 1417
AcoI YGGCCR 1 cut(s) 496
AcsI RAATTY 3 cut(s) 344, 890, 1361
AcuI CTGAAG 1 cut(s) 1206
AfaI GTAC 2 cut(s) 279, 538
AfiI CCNNNNNNNGG 6 cut(s) 66, 416, 499, 791, 848, 1157
AgsI TTSAA 3 cut(s) 349, 963, 1038
AjnI CCWGG 3 cut(s) 271, 409, 498
AjuI GAANNNNNNNTTGG 2 cut(s) 657, 689
Alw21I GWGCWC 2 cut(s) 310, 1476
Alw26I GTCTC 1 cut(s) 992
AlwI GGATC 8 cut(s) 12, 379, 651, 908, 1280, 1384, 1404, 1417
AlwNI CAGNNNCTG 3 cut(s) 242, 374, 937
AoxI GGCC 1 cut(s) 496
ApeKI GCWGC 4 cut(s) 734, 1016, 1019, 1022
ApoI RAATTY 3 cut(s) 344, 890, 1361
AspA2I CCTAGG 1 cut(s) 917
AspLEI GCGC 2 cut(s) 931, 1401
AspS9I GGNCC 1 cut(s) 170
AsuHPI GGTGA 4 cut(s) 308, 689, 1180, 1402
AvaII GGWCC 1 cut(s) 170
AvrII CCTAGG 1 cut(s) 917
AxyI CCTNAGG 2 cut(s) 1053, 1242
BalI TGGCCA 1 cut(s) 498
BamHI GGATCC 2 cut(s) 4, 1409
BanI GGYRCC 1 cut(s) 1180
BanII GRGCYC 1 cut(s) 1476
BbsI GAAGAC 2 cut(s) 528, 1140
Bbv12I GWGCWC 2 cut(s) 310, 1476
BbvI GCAGC 4 cut(s) 721, 1003, 1006, 1009
BccI CCATC 3 cut(s) 191, 1017, 1367
BciT130I CCWGG 3 cut(s) 273, 411, 500
BcoDI GTCTC 1 cut(s) 992
BfaI CTAG 4 cut(s) 540, 827, 918, 1283
BfuAI ACCTGC 2 cut(s) 874, 1168
BglII AGATCT 1 cut(s) 815
BisI GCNGC 4 cut(s) 735, 1017, 1020, 1023
BlnI CCTAGG 1 cut(s) 917
BlsI GCNGC 4 cut(s) 736, 1018, 1021, 1024
Bme1390I CCNGG 3 cut(s) 273, 411, 500
Bme18I GGWCC 1 cut(s) 170
BmgT120I GGNCC 1 cut(s) 170
BmiI GGNNCC 4 cut(s) 6, 388, 1182, 1411
BmrFI CCNGG 3 cut(s) 273, 411, 500
BmrI ACTGGG 3 cut(s) 130, 252, 716
BmsI GCATC 3 cut(s) 214, 1034, 1309
BmuI ACTGGG 3 cut(s) 130, 252, 716
BpiI GAAGAC 2 cut(s) 528, 1140
BpuEI CTTGAG 1 cut(s) 1460
BsaAI YACGTR 1 cut(s) 205
BsaJI CCNNGG 6 cut(s) 493, 499, 602, 842, 917, 1139
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 4 cut(s) 371, 401, 702, 732
Bsc4I CCNNNNNNNGG 6 cut(s) 66, 416, 499, 791, 848, 1157
Bse1I ACTGG 7 cut(s) 125, 247, 395, 711, 942, 1086, 1109
Bse21I CCTNAGG 2 cut(s) 1053, 1242
Bse3DI GCAATG 2 cut(s) 767, 1344
BseBI CCWGG 3 cut(s) 273, 411, 500
BseDI CCNNGG 6 cut(s) 493, 499, 602, 842, 917, 1139
BseGI GGATG 3 cut(s) 229, 289, 1009
BseLI CCNNNNNNNGG 6 cut(s) 66, 416, 499, 791, 848, 1157
BseMI GCAATG 2 cut(s) 767, 1344
BseMII CTCAG 1 cut(s) 1233
BseNI ACTGG 7 cut(s) 125, 247, 395, 711, 942, 1086, 1109
BseXI GCAGC 4 cut(s) 721, 1003, 1006, 1009
BseYI CCCAGC 1 cut(s) 15
BsgI GTGCAG 1 cut(s) 1355
BshFI GGCC 1 cut(s) 498
BshNI GGYRCC 1 cut(s) 1180
BsiHKAI GWGCWC 2 cut(s) 310, 1476
BsiSI CCGG 2 cut(s) 281, 1013
BslFI GGGAC 5 cut(s) 474, 1071, 1286, 1367, 1442
BslI CCNNNNNNNGG 6 cut(s) 66, 416, 499, 791, 848, 1157
BsmAI GTCTC 1 cut(s) 992
BsmFI GGGAC 5 cut(s) 474, 1071, 1286, 1367, 1442
BsnI GGCC 1 cut(s) 498
Bsp1286I GDGCHC 2 cut(s) 310, 1476
Bsp19I CCATGG 3 cut(s) 602, 842, 1139
BspACI CCGC 1 cut(s) 988
BspANI GGCC 1 cut(s) 498
BspCNI CTCAG 1 cut(s) 1234
BspHI TCATGA 2 cut(s) 1228, 1481
BspLI GGNNCC 4 cut(s) 6, 388, 1182, 1411
BspMI ACCTGC 2 cut(s) 874, 1168
BspPI GGATC 8 cut(s) 12, 379, 651, 908, 1280, 1384, 1404, 1417
BspT107I GGYRCC 1 cut(s) 1180
BsrDI GCAATG 2 cut(s) 767, 1344
BsrI ACTGG 7 cut(s) 125, 247, 395, 711, 942, 1086, 1109
BssECI CCNNGG 6 cut(s) 493, 499, 602, 842, 917, 1139
BssT1I CCWWGG 5 cut(s) 493, 602, 842, 917, 1139
Bst2UI CCWGG 3 cut(s) 273, 411, 500
Bst6I CTCTTC 1 cut(s) 660
BstAPI GCANNNNNTGC 1 cut(s) 1031
BstBAI YACGTR 1 cut(s) 205
BstDEI CTNAG 3 cut(s) 382, 1053, 1242
BstDSI CCRYGG 3 cut(s) 602, 842, 1139
BstENI CCTNNNNNAGG 1 cut(s) 497
BstF5I GGATG 3 cut(s) 229, 289, 1009
BstHHI GCGC 2 cut(s) 931, 1401
BstMAI GTCTC 1 cut(s) 992
BstMWI GCNNNNNNNGC 3 cut(s) 198, 1022, 1031
BstNI CCWGG 3 cut(s) 273, 411, 500
BstNSI RCATGY 2 cut(s) 508, 741
BstSCI CCNGG 3 cut(s) 271, 409, 498
BstSNI TACGTA 1 cut(s) 205
BstV1I GCAGC 4 cut(s) 721, 1003, 1006, 1009
BstV2I GAAGAC 2 cut(s) 528, 1140
BstX2I RGATCY 4 cut(s) 4, 371, 815, 1409
BstYI RGATCY 4 cut(s) 4, 371, 815, 1409
Bsu36I CCTNAGG 2 cut(s) 1053, 1242
BsuRI GGCC 1 cut(s) 498
BtgI CCRYGG 3 cut(s) 602, 842, 1139
BtsCI GGATG 3 cut(s) 229, 289, 1009
BtsI GCAGTG 1 cut(s) 1219
BtsIMutI CAGTG 4 cut(s) 118, 402, 704, 1219
BveI ACCTGC 2 cut(s) 874, 1168
CaiI CAGNNNCTG 3 cut(s) 242, 374, 937
CciI TCATGA 2 cut(s) 1228, 1481
CfoI GCGC 2 cut(s) 931, 1401
Cfr13I GGNCC 1 cut(s) 170
Csp6I GTAC 2 cut(s) 278, 537
CviAII CATG 8 cut(s) 149, 505, 603, 738, 843, 1140, 1229, 1482
CviQI GTAC 2 cut(s) 278, 537
DdeI CTNAG 3 cut(s) 382, 1053, 1242
DraI TTTAAA 1 cut(s) 160
EaeI YGGCCR 1 cut(s) 496
Eam1104I CTCTTC 1 cut(s) 660
EarI CTCTTC 1 cut(s) 660
Ecl136II GAGCTC 1 cut(s) 1474
Eco105I TACGTA 1 cut(s) 205
Eco130I CCWWGG 5 cut(s) 493, 602, 842, 917, 1139
Eco24I GRGCYC 1 cut(s) 1476
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 1474
Eco57I CTGAAG 1 cut(s) 1206
Eco81I CCTNAGG 2 cut(s) 1053, 1242
EcoICRI GAGCTC 1 cut(s) 1474
EcoNI CCTNNNNNAGG 1 cut(s) 497
EcoRI GAATTC 1 cut(s) 1361
EcoRII CCWGG 3 cut(s) 271, 409, 498
EcoT14I CCWWGG 5 cut(s) 493, 602, 842, 917, 1139
EcoT38I GRGCYC 1 cut(s) 1476
ErhI CCWWGG 5 cut(s) 493, 602, 842, 917, 1139
FaeI CATG 8 cut(s) 152, 508, 606, 741, 846, 1143, 1232, 1485
FalI AAGNNNNNCTT 2 cut(s) 1385, 1417
FaqI GGGAC 5 cut(s) 474, 1071, 1286, 1367, 1442
FatI CATG 8 cut(s) 148, 504, 602, 737, 842, 1139, 1228, 1481
FauI CCCGC 1 cut(s) 995
Fnu4HI GCNGC 4 cut(s) 735, 1017, 1020, 1023
FokI GGATG 3 cut(s) 236, 296, 996
FriOI GRGCYC 1 cut(s) 1476
Fsp4HI GCNGC 4 cut(s) 735, 1017, 1020, 1023
FspBI CTAG 4 cut(s) 540, 827, 918, 1283
GlaI GCGC 2 cut(s) 930, 1400
GluI GCNGC 4 cut(s) 735, 1017, 1020, 1023
GsaI CCCAGC 1 cut(s) 19
HaeIII GGCC 1 cut(s) 498
HapII CCGG 2 cut(s) 281, 1013
HhaI GCGC 2 cut(s) 931, 1401
Hin1II CATG 8 cut(s) 152, 508, 606, 741, 846, 1143, 1232, 1485
Hin6I GCGC 2 cut(s) 929, 1399
HinP1I GCGC 2 cut(s) 929, 1399
HinfI GANTC 6 cut(s) 56, 248, 268, 287, 593, 1286
HpaII CCGG 2 cut(s) 281, 1013
HphI GGTGA 4 cut(s) 308, 689, 1180, 1402
Hpy166II GTNNAC 3 cut(s) 278, 622, 680
Hpy188I TCNGA 7 cut(s) 196, 238, 376, 559, 598, 878, 1370
Hpy188III TCNNGA 3 cut(s) 1229, 1241, 1482
Hpy8I GTNNAC 3 cut(s) 278, 622, 680
HpyAV CCTTC 3 cut(s) 445, 542, 1387
HpyCH4IV ACGT 2 cut(s) 204, 1423
HpyCH4V TGCA 8 cut(s) 227, 355, 737, 779, 953, 1025, 1147, 1336
HpyF10VI GCNNNNNNNGC 3 cut(s) 198, 1022, 1031
HpyF3I CTNAG 3 cut(s) 382, 1053, 1242
HpySE526I ACGT 2 cut(s) 204, 1423
Hsp92II CATG 8 cut(s) 152, 508, 606, 741, 846, 1143, 1232, 1485
HspAI GCGC 2 cut(s) 929, 1399
LmnI GCTCC 4 cut(s) 17, 313, 392, 1054
Lsp1109I GCAGC 4 cut(s) 721, 1003, 1006, 1009
LweI GCATC 3 cut(s) 214, 1034, 1309
MaeI CTAG 4 cut(s) 540, 827, 918, 1283
MaeII ACGT 2 cut(s) 204, 1423
MaeIII GTNAC 4 cut(s) 253, 740, 763, 1217
MboII GAAGA 6 cut(s) 398, 533, 557, 677, 1145, 1183
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 4 cut(s) 4, 371, 815, 1409
MhlI GDGCHC 2 cut(s) 310, 1476
MlsI TGGCCA 1 cut(s) 498
MluNI TGGCCA 1 cut(s) 498
MlyI GAGTC 1 cut(s) 1295
MmeI TCCRAC 1 cut(s) 537
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MseI TTAA 5 cut(s) 132, 140, 159, 1071, 1341
Msp20I TGGCCA 1 cut(s) 498
MspA1I CMGCKG 1 cut(s) 1214
MspI CCGG 2 cut(s) 281, 1013
MspR9I CCNGG 3 cut(s) 273, 411, 500
MssI GTTTAAAC 1 cut(s) 160
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 3 cut(s) 273, 411, 500
MwoI GCNNNNNNNGC 3 cut(s) 198, 1022, 1031
NcoI CCATGG 3 cut(s) 602, 842, 1139
NlaIII CATG 8 cut(s) 152, 508, 606, 741, 846, 1143, 1232, 1485
NlaIV GGNNCC 4 cut(s) 6, 388, 1182, 1411
NmuCI GTSAC 1 cut(s) 1217
NspI RCATGY 2 cut(s) 508, 741
PagI TCATGA 2 cut(s) 1228, 1481
PaqCI CACCTGC 1 cut(s) 1168
PfeI GAWTC 5 cut(s) 56, 248, 268, 287, 593
PkrI GCNGC 4 cut(s) 736, 1018, 1021, 1024
PleI GAGTC 1 cut(s) 1294
PmeI GTTTAAAC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 1294
Ppu21I YACGTR 1 cut(s) 205
Psp124BI GAGCTC 1 cut(s) 1476
Psp6I CCWGG 3 cut(s) 271, 409, 498
PspFI CCCAGC 1 cut(s) 15
PspGI CCWGG 3 cut(s) 271, 409, 498
PspN4I GGNNCC 4 cut(s) 6, 388, 1182, 1411
PspPI GGNCC 1 cut(s) 170
PstNI CAGNNNCTG 3 cut(s) 242, 374, 937
PsuI RGATCY 4 cut(s) 4, 371, 815, 1409
PvuII CAGCTG 1 cut(s) 1214
RsaI GTAC 2 cut(s) 279, 538
RsaNI GTAC 2 cut(s) 278, 537
SacI GAGCTC 1 cut(s) 1476
SaqAI TTAA 5 cut(s) 132, 140, 159, 1071, 1341
SatI GCNGC 4 cut(s) 735, 1017, 1020, 1023
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 1295
ScrFI CCNGG 3 cut(s) 273, 411, 500
SduI GDGCHC 2 cut(s) 310, 1476
SfaNI GCATC 3 cut(s) 214, 1034, 1309
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 1475
SmoI CTYRAG 1 cut(s) 1475
SnaBI TACGTA 1 cut(s) 205
SsiI CCGC 1 cut(s) 988
SspI AATATT 2 cut(s) 232, 837
SspMI CTAG 4 cut(s) 540, 827, 918, 1283
SstI GAGCTC 1 cut(s) 1476
StyD4I CCNGG 3 cut(s) 271, 409, 498
StyI CCWWGG 5 cut(s) 493, 602, 842, 917, 1139
TaiI ACGT 2 cut(s) 207, 1426
TfiI GAWTC 5 cut(s) 56, 248, 268, 287, 593
Tru1I TTAA 5 cut(s) 132, 140, 159, 1071, 1341
Tru9I TTAA 5 cut(s) 132, 140, 159, 1071, 1341
TscAI CASTG 4 cut(s) 125, 402, 711, 1226
TseFI GTSAC 1 cut(s) 1217
TseI GCWGC 4 cut(s) 734, 1016, 1019, 1022
Tsp45I GTSAC 1 cut(s) 1217
TspDTI ATGAA 7 cut(s) 300, 417, 464, 606, 649, 1248, 1354
TspRI CASTG 4 cut(s) 125, 402, 711, 1226
VpaK11BI GGWCC 1 cut(s) 170
XagI CCTNNNNNAGG 1 cut(s) 497
XapI RAATTY 3 cut(s) 344, 890, 1361
XceI RCATGY 2 cut(s) 508, 741
XmaJI CCTAGG 1 cut(s) 917
XspI CTAG 4 cut(s) 540, 827, 918, 1283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.