Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0005707

Physical Location & Seq

Genomic Coordinates Forward (+)

3793245 .. 3793580

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0022600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCTAGCTTTACTGCAAGGAGTGCAGCTAGCTCTTGATCACCAGTTTACCCCTTTGCTAGTGGAGTCCGACTGCATGGACTTGGTACAGGCTGTCAATGGGTCTTCCCTAGATTACTCGGACCTGGGATTCTTGATACATGATTTGAGAGCACTGCTGCACGCTGCTCTTGATGCAAGATTAATATATGGCAATCGTAAAGTAAATTTGGTGGCGCATACTTTAGCGCAGGAGGCCAAAGATGGTCAGTTTAGGGTGAATTTCTTTACCAATATTCCTCCAACTGTGGAGGCTATTGTAATCTCTGATTGTCATGATTCCCCATCAATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

111

Amino Acids

12.2

Weight (kDa)

4.83

Isoelectric Point (pI)

29.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 79	1.4e-13	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0005707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13800 AT5G13800 AT5G13800 AT5G13800
fragaria_vesca	FvH4_7g01940 FvH4_7g01940
malus_domestica	MD02G1299000.v1.1 MD07G1025100.v1.1
prunus_persica	Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1
pyrus_communis	pycom02g25150 pycom02g25160 pycom07g01940
rosa_chinensis	RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891
rosa_laevigata	RLG00000030519
rosa_multiflora	Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013
rosa_roxburghii	Rroxscaffold_4G00328990
rosa_rugosa	Rorug01G0022600 Rorug01G0022700
rosa_samantha	Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700
rosa_wichuraiana	Rw1G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	205, 259
AfaI	GTAC	1 cut(s)	87
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	3 cut(s)	8, 28, 32
AluI	AGCT	3 cut(s)	8, 28, 32
Alw21I	GWGCWC	1 cut(s)	154
AoxI	GGCC	1 cut(s)	234
ApeKI	GCWGC	3 cut(s)	25, 157, 164
ApoI	RAATTY	2 cut(s)	205, 259
AseI	ATTAAT	1 cut(s)	182
AspLEI	GCGC	2 cut(s)	217, 229
AspS9I	GGNCC	1 cut(s)	121
AsuHPI	GGTGA	2 cut(s)	32, 268
AsuNHI	GCTAGC	2 cut(s)	4, 28
AvaII	GGWCC	1 cut(s)	121
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	37, 144, 151
BccI	CCATC	2 cut(s)	236, 331
BciT130I	CCWGG	1 cut(s)	125
BclI	TGATCA	1 cut(s)	37
BfaI	CTAG	4 cut(s)	5, 29, 59, 110
BisI	GCNGC	3 cut(s)	26, 158, 165
BlsI	GCNGC	3 cut(s)	27, 159, 166
Bme1390I	CCNGG	1 cut(s)	125
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	121
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	163
BmtI	GCTAGC	2 cut(s)	8, 32
BpiI	GAAGAC	1 cut(s)	96
BsaJI	CCNNGG	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	43
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	43
BseXI	GCAGC	3 cut(s)	37, 144, 151
BsgI	GTGCAG	2 cut(s)	44, 143
BshFI	GGCC	1 cut(s)	236
BsiHKAI	GWGCWC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	154
Bsp143I	GATC	1 cut(s)	37
BspANI	GGCC	1 cut(s)	236
BspHI	TCATGA	1 cut(s)	313
BspOI	GCTAGC	2 cut(s)	8, 32
BsrI	ACTGG	1 cut(s)	43
BssECI	CCNNGG	1 cut(s)	124
BssMI	GATC	1 cut(s)	37
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	1 cut(s)	286
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	6, 30, 162
BstHHI	GCGC	2 cut(s)	217, 229
BstKTI	GATC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	37
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 173, 233
BstNI	CCWGG	1 cut(s)	125
BstSCI	CCNGG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	37, 144, 151
BstV2I	GAAGAC	1 cut(s)	96
BsuRI	GGCC	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	6, 30, 162
CciI	TCATGA	1 cut(s)	313
CfoI	GCGC	2 cut(s)	217, 229
Cfr13I	GGNCC	1 cut(s)	121
Csp6I	GTAC	1 cut(s)	86
CviAII	CATG	3 cut(s)	76, 140, 314
CviJI	RGCY	6 cut(s)	8, 28, 32, 92, 236, 293
CviKI_1	RGCY	6 cut(s)	8, 28, 32, 92, 236, 293
CviQI	GTAC	1 cut(s)	86
DpnI	GATC	1 cut(s)	39
DpnII	GATC	1 cut(s)	37
Eco47I	GGWCC	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	79, 143, 317
FaiI	YATR	6 cut(s)	77, 141, 187, 189, 219, 315
FatI	CATG	3 cut(s)	75, 139, 313
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	3 cut(s)	26, 158, 165
Fsp4HI	GCNGC	3 cut(s)	26, 158, 165
FspBI	CTAG	4 cut(s)	5, 29, 59, 110
GlaI	GCGC	2 cut(s)	216, 228
GluI	GCNGC	3 cut(s)	26, 158, 165
HaeIII	GGCC	1 cut(s)	236
HhaI	GCGC	2 cut(s)	217, 229
Hin1II	CATG	3 cut(s)	79, 143, 317
Hin6I	GCGC	2 cut(s)	215, 227
HinP1I	GCGC	2 cut(s)	215, 227
HinfI	GANTC	3 cut(s)	65, 129, 317
HphI	GGTGA	2 cut(s)	32, 268
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	3 cut(s)	70, 121, 307
Hpy188III	TCNNGA	4 cut(s)	35, 133, 170, 314
Hpy8I	GTNNAC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	16, 25, 75, 160, 176
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 173, 233
Hsp92II	CATG	3 cut(s)	79, 143, 317
HspAI	GCGC	2 cut(s)	215, 227
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	1 cut(s)	37
LpnPI	CCDG	5 cut(s)	56, 74, 110, 137, 215
Lsp1109I	GCAGC	3 cut(s)	37, 144, 151
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	4 cut(s)	5, 29, 59, 110
MalI	GATC	1 cut(s)	39
MboI	GATC	1 cut(s)	37
MboII	GAAGA	1 cut(s)	96
MhlI	GDGCHC	1 cut(s)	154
MluCI	AATT	3 cut(s)	205, 259, 331
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	2 cut(s)	93, 305
MnlI	CCTC	3 cut(s)	226, 283, 288
MseI	TTAA	1 cut(s)	182
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	3 cut(s)	22, 173, 233
NdeII	GATC	1 cut(s)	37
NheI	GCTAGC	2 cut(s)	4, 28
NlaIII	CATG	3 cut(s)	79, 143, 317
PagI	TCATGA	1 cut(s)	313
PfeI	GAWTC	2 cut(s)	129, 317
PkrI	GCNGC	3 cut(s)	27, 159, 166
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
PshBI	ATTAAT	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	123
PspGI	CCWGG	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	87
RsaNI	GTAC	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	182
SatI	GCNGC	3 cut(s)	26, 158, 165
Sau3AI	GATC	1 cut(s)	37
Sau96I	GGNCC	1 cut(s)	121
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	154
SetI	ASST	4 cut(s)	10, 30, 34, 126
SfaNI	GCATC	1 cut(s)	163
SinI	GGWCC	1 cut(s)	121
Sse9I	AATT	3 cut(s)	205, 259, 331
SspI	AATATT	1 cut(s)	274
SspMI	CTAG	4 cut(s)	5, 29, 59, 110
StyD4I	CCNGG	1 cut(s)	123
TaaI	ACNGT	1 cut(s)	286
TasI	AATT	3 cut(s)	205, 259, 331
TfiI	GAWTC	2 cut(s)	129, 317
Tru1I	TTAA	1 cut(s)	182
Tru9I	TTAA	1 cut(s)	182
TscAI	CASTG	1 cut(s)	159
TseI	GCWGC	3 cut(s)	25, 157, 164
TspRI	CASTG	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	121
VspI	ATTAAT	1 cut(s)	182
XapI	RAATTY	2 cut(s)	205, 259
XspI	CTAG	4 cut(s)	5, 29, 59, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.