Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0005707

Physical Location & Seq

Genomic Coordinates Reverse (-)

1527481 .. 1528443

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01940.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTTGCCCCTCAAGGAAAATTATCCTTTAAGGAGGCTTTGGCCAGATGTCAAATGAACAACATACCAATTTGTCTTATGTATGGAAAAGAAGATCGATCGGTGAAACCTATTTGGGGCCTTCAGGTGAAGCAACAGGTGCCTGAAGCTCCATATTACGAGATCAGTCCCGCTGGTCACTGCCCTCATGATGAAGTTCCGGAGGTTGTGAATTACTTGTTACGCGGGTGGATCAAAAACCTAGAGACTGAGGGTTCAGTTGCATTACCTTTGCTTGATGCCCCTGAAGGTATGCCGAACAACCTTGCCAAGGACTTGGAATTTCTCAGAGATGGATCGAAAAAGTCAGTAAACGTGCGGTTCTTCGCATCCAGGTTCTCACTTTGGGGCATGATAAGTTCTTATATCAGATTCATGAACCTGCAACGAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015994 GO:0015996 GO:0016020 GO:0016787 GO:0016788 GO:0019439 GO:0031976 GO:0031984 GO:0033013 GO:0033015 GO:0034357 GO:0034641 GO:0042440 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0052689 GO:0055035 GO:0071704 GO:0080124 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Abhydrolase_6

Protein Analysis

145

Amino Acids

16.44

Weight (kDa)

8.81

Isoelectric Point (pI)

55.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005707)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13800 AT5G13800 AT5G13800 AT5G13800
fragaria_vesca	FvH4_7g01940 FvH4_7g01940
malus_domestica	MD02G1299000.v1.1 MD07G1025100.v1.1
prunus_persica	Prupe.2G025100_v2.0.a1 Prupe.2G025100_v2.0.a1
pyrus_communis	pycom02g25150 pycom02g25160 pycom07g01940
rosa_chinensis	RchiOBHm_Chr1g0318661 RchiOBHm_Chr1g0318891
rosa_laevigata	RLG00000030519
rosa_multiflora	Rmu_co8335935.1_g000001 Rmu_sc0001304.1_g000038 Rmu_sc0002545.1_g000013
rosa_roxburghii	Rroxscaffold_4G00328990
rosa_rugosa	Rorug01G0022600 Rorug01G0022700
rosa_samantha	Rh1AG035700 Rh1AG037000 Rh1BG031500 Rh1CG034600 Rh1DG035700
rosa_wichuraiana	Rw1G002790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	139
AccII	CGCG	1 cut(s)	225
AccIII	TCCGGA	1 cut(s)	199
AciI	CCGC	3 cut(s)	171, 225, 358
AclWI	GGATC	2 cut(s)	239, 343
AcoI	YGGCCR	1 cut(s)	42
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	3 cut(s)	107, 165, 306
AfiI	CCNNNNNNNGG	2 cut(s)	116, 310
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	239
AlwI	GGATC	2 cut(s)	239, 343
Aor13HI	TCCGGA	1 cut(s)	199
AoxI	GGCC	2 cut(s)	42, 118
ApoI	RAATTY	1 cut(s)	320
AspS9I	GGNCC	1 cut(s)	118
AsuHPI	GGTGA	2 cut(s)	115, 139
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	139
BccI	CCATC	1 cut(s)	326
BciT130I	CCWGG	1 cut(s)	373
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	242
BfuAI	ACCTGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	373
BmgT120I	GGNCC	1 cut(s)	118
BmiI	GGNNCC	2 cut(s)	119, 141
BmrFI	CCNGG	1 cut(s)	373
BmsI	GCATC	2 cut(s)	268, 377
Bsa29I	ATCGAT	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	309
BsaWI	WCCGGW	1 cut(s)	199
Bsc4I	CCNNNNNNNGG	2 cut(s)	116, 310
BseAI	TCCGGA	1 cut(s)	199
BseBI	CCWGG	1 cut(s)	373
BseCI	ATCGAT	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	368
BseLI	CCNNNNNNNGG	2 cut(s)	116, 310
BseMII	CTCAG	2 cut(s)	240, 340
Bsh1236I	CGCG	1 cut(s)	225
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	2 cut(s)	44, 120
BshNI	GGYRCC	1 cut(s)	139
BshVI	ATCGAT	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	153
BslI	CCNNNNNNNGG	2 cut(s)	116, 310
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	153
BsnI	GGCC	2 cut(s)	44, 120
Bsp13I	TCCGGA	1 cut(s)	199
Bsp143I	GATC	5 cut(s)	94, 98, 162, 231, 335
BspACI	CCGC	3 cut(s)	171, 225, 358
BspANI	GGCC	2 cut(s)	44, 120
BspCNI	CTCAG	2 cut(s)	241, 339
BspDI	ATCGAT	1 cut(s)	97
BspEI	TCCGGA	1 cut(s)	199
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	2 cut(s)	187, 414
BspLI	GGNNCC	2 cut(s)	119, 141
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	239, 343
BspT107I	GGYRCC	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	309
BssMI	GATC	5 cut(s)	94, 98, 162, 231, 335
BssT1I	CCWWGG	1 cut(s)	309
Bst2UI	CCWGG	1 cut(s)	373
BstAPI	GCANNNNNTGC	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	6
BstDEI	CTNAG	2 cut(s)	249, 326
BstENI	CCTNNNNNAGG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	5 cut(s)	97, 101, 165, 234, 338
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	5 cut(s)	94, 98, 162, 231, 335
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstNI	CCWGG	1 cut(s)	373
BstSCI	CCNGG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	44, 120
BsuTUI	ATCGAT	1 cut(s)	97
BtsCI	GGATG	1 cut(s)	368
BtsI	GCAGTG	1 cut(s)	178
BtsIMutI	CAGTG	1 cut(s)	178
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	6
CciI	TCATGA	2 cut(s)	187, 414
Cfr13I	GGNCC	1 cut(s)	118
ClaI	ATCGAT	1 cut(s)	97
CviAII	CATG	3 cut(s)	188, 391, 415
CviJI	RGCY	4 cut(s)	38, 44, 120, 149
CviKI_1	RGCY	4 cut(s)	38, 44, 120, 149
DdeI	CTNAG	2 cut(s)	249, 326
DpnI	GATC	5 cut(s)	96, 100, 164, 233, 337
DpnII	GATC	5 cut(s)	94, 98, 162, 231, 335
EaeI	YGGCCR	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	309
Eco57I	CTGAAG	3 cut(s)	107, 165, 306
EcoNI	CCTNNNNNAGG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	309
ErhI	CCWWGG	1 cut(s)	309
FaeI	CATG	3 cut(s)	191, 394, 418
FaiI	YATR	9 cut(s)	65, 80, 84, 154, 189, 293, 392, 405, 416
FaqI	GGGAC	1 cut(s)	153
FatI	CATG	3 cut(s)	187, 390, 414
FauI	CCCGC	2 cut(s)	178, 218
FokI	GGATG	1 cut(s)	355
FspBI	CTAG	1 cut(s)	242
HaeIII	GGCC	2 cut(s)	44, 120
HapII	CCGG	1 cut(s)	200
Hin1II	CATG	3 cut(s)	191, 394, 418
HinfI	GANTC	1 cut(s)	411
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	115, 139
Hpy166II	GTNNAC	1 cut(s)	352
Hpy188I	TCNGA	2 cut(s)	329, 410
Hpy188III	TCNNGA	3 cut(s)	188, 200, 415
Hpy8I	GTNNAC	1 cut(s)	352
HpyAV	CCTTC	2 cut(s)	131, 281
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	2 cut(s)	263, 424
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	2 cut(s)	249, 326
HpySE526I	ACGT	1 cut(s)	354
Hsp92II	CATG	3 cut(s)	191, 394, 418
Kpn2I	TCCGGA	1 cut(s)	199
Kzo9I	GATC	5 cut(s)	94, 98, 162, 231, 335
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	9 cut(s)	58, 110, 122, 156, 159, 213, 297, 358, 385
LweI	GCATC	2 cut(s)	268, 377
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	2 cut(s)	176, 219
MalI	GATC	5 cut(s)	96, 100, 164, 233, 337
MboI	GATC	5 cut(s)	94, 98, 162, 231, 335
MboII	GAAGA	2 cut(s)	104, 355
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	4 cut(s)	20, 69, 211, 320
MluNI	TGGCCA	1 cut(s)	44
MnlI	CCTC	5 cut(s)	21, 28, 195, 196, 244
Mox20I	TGGCCA	1 cut(s)	44
MroI	TCCGGA	1 cut(s)	199
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	1 cut(s)	30
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	373
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeII	GATC	5 cut(s)	94, 98, 162, 231, 335
NlaIII	CATG	3 cut(s)	191, 394, 418
NlaIV	GGNNCC	2 cut(s)	119, 141
NmuCI	GTSAC	1 cut(s)	176
PagI	TCATGA	2 cut(s)	187, 414
PfeI	GAWTC	1 cut(s)	411
Ple19I	CGATCG	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	2 cut(s)	119, 141
PspPI	GGNCC	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	30
Sau3AI	GATC	5 cut(s)	94, 98, 162, 231, 335
Sau96I	GGNCC	1 cut(s)	118
ScrFI	CCNGG	1 cut(s)	373
SfaNI	GCATC	2 cut(s)	268, 377
SmlI	CTYRAG	1 cut(s)	12
SmoI	CTYRAG	1 cut(s)	12
Sse9I	AATT	4 cut(s)	20, 69, 211, 320
SsiI	CCGC	3 cut(s)	171, 225, 358
SspMI	CTAG	1 cut(s)	242
StyD4I	CCNGG	1 cut(s)	371
StyI	CCWWGG	1 cut(s)	309
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	2 cut(s)	97, 338
TasI	AATT	4 cut(s)	20, 69, 211, 320
TfiI	GAWTC	1 cut(s)	411
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	176
TspDTI	ATGAA	4 cut(s)	71, 207, 403, 431
TspRI	CASTG	1 cut(s)	185
XagI	CCTNNNNNAGG	1 cut(s)	308
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.