Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Forward (+)

4947577 .. 4950445

Gene Structure 2869 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15240.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGAGCGAGGACAAAGATTACATGTCGGAGCCATTTATCGTTAAGAAGATTGATGATGAAGAATCATTGCTTGATGATTATAATCCACAGGGCAATACTTCTTTCTCCAAGACTTGTTTCCATGGCATTAACGCCTTATCAGGTGTGGGTATATTATCGGTCCCTTATGCCTTAGCATCCGGAGGATGGCTAAGTTTGATCATACTTTTCACCGTAGCGATCACAACTTTCTACTGTGCCATTCTCATTAAGAGATGTATGGAAATGGATCCACTTCTTAGATCATACCCGGACATTGGCTACAAAGCCTTTGGAAACACAGGACGTGTTATCGTCTCCATCTTCATGAACCTCGAGCTTTACCTAGTTGCAACTAGTTTCTTGATCCTAGAAGGTGACAACCTTAACAAACTCTTCTCAAACGTTGGACTCAACTTCATGGGGCTTGAATTCCAAGGCAAGCAAATGTTCATCATCATGGTGGCTCTCATTATTCTTCCTTCGGTTTGGTTAGACAATATGAGGATTCTTTCTTATGTTTCCGCGAGTGGTGTCTTTGCTTCCGGGGTTATTCTTGCTTCTATCTTTTCGGTTGGAGCTTTTGAAGGCGTAGGGTTCAAGAACAATGACTCAGAGGTCTTTCGACTTAATGGAGTCGCTACTTCGGTGAGCTTATACGCGTTTTGTTATTGCGCTCATCCAGTTTTCCCAACTCTATACACTTCCATGAAGAACAAACGCCAATTCTCAAACGTTATGATTATATGTTTCACAATATGCACCTTCATATATGCATCAGTGGCGGTATTGGGTTACTTAATGTATGGATCAGATGTTGAATCACAGATCACTTTGAATCTTCCTACTGATAAGCTTAGTTCAAAAGTGGCGATATGGACTACATTGGTCAACCCAATAGCTAAGTTTGCTCTCATGGTTACACCTATTATTGACGCAATGAGAAGCCGGTTTTCTCGAGTTTTGCCTAATAAAAGAGCTTCTGGATTTTTGCTAAGTACAATACTAGTTACTAGCAATGTGATTGTGGCATTGCTTCTTCCGTTTTTTGGTGATCTTATGAGTCTTGTGGGAGCATTCTTGAGCGCATCCGCATCGGTTATATTGCCATGTTTATGTTACTTAAAGATCTCTGGGAAATATCAAAGACTCGGATTCGAAACATTGGTGCTCATCGGAATCACTCTAACCGGTATCGTGGTTGTGATAACCGGAACTTACCAAGCGGTCAAGGACATTTTTGGTCGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015318 GO:0015711 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0098588 GO:0098656 GO:0098805 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

423

Amino Acids

46.47

Weight (kDa)

7.98

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	32 - 142	7.2e-21	Transmembrane amino acid transporter protein
Aa_trans	PF01490	141 - 305	7.7e-25	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	81
AasI	GACNNNNNNGTC	1 cut(s)	635
AccII	CGCG	2 cut(s)	545, 680
AccIII	TCCGGA	1 cut(s)	179
AciI	CCGC	4 cut(s)	543, 803, 1110, 1244
AclI	AACGTT	2 cut(s)	423, 753
AclWI	GGATC	4 cut(s)	263, 276, 379, 835
AcsI	RAATTY	1 cut(s)	449
AfaI	GTAC	1 cut(s)	1018
AfiI	CCNNNNNNNGG	3 cut(s)	186, 296, 1067
AflIII	ACRYGT	3 cut(s)	21, 325, 678
AgeI	ACCGGT	1 cut(s)	1208
AgsI	TTSAA	6 cut(s)	449, 605, 619, 839, 856, 882
AhlI	ACTAGT	2 cut(s)	374, 1024
AjiI	CACGTC	1 cut(s)	326
AjuI	GAANNNNNNNTTGG	2 cut(s)	101, 133
AluBI	AGCT	6 cut(s)	358, 599, 672, 874, 920, 998
AluI	AGCT	6 cut(s)	358, 599, 672, 874, 920, 998
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	1 cut(s)	340
AlwI	GGATC	4 cut(s)	263, 276, 379, 835
Ama87I	CYCGRG	2 cut(s)	353, 975
Aor13HI	TCCGGA	1 cut(s)	179
ApoI	RAATTY	1 cut(s)	449
AsiGI	ACCGGT	1 cut(s)	1208
AspLEI	GCGC	2 cut(s)	695, 1106
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	2 cut(s)	290, 565
AsuHPI	GGTGA	4 cut(s)	202, 407, 679, 1082
AsuII	TTCGAA	1 cut(s)	1176
AvaI	CYCGRG	2 cut(s)	353, 975
AvaII	GGWCC	1 cut(s)	160
BamHI	GGATCC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	1191
BccI	CCATC	2 cut(s)	180, 347
BcgI	CGANNNNNNTGC	2 cut(s)	1095, 1129
BclI	TGATCA	1 cut(s)	198
BcnI	CCSGG	2 cut(s)	290, 565
BcoDI	GTCTC	1 cut(s)	340
BcuI	ACTAGT	2 cut(s)	374, 1024
BfaI	CTAG	5 cut(s)	365, 375, 389, 1025, 1032
BglII	AGATCT	1 cut(s)	1146
Bme1390I	CCNGG	2 cut(s)	290, 565
Bme18I	GGWCC	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	353, 975
BmgBI	CACGTC	1 cut(s)	326
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	3 cut(s)	30, 162, 270
BmrFI	CCNGG	2 cut(s)	290, 565
BmsI	GCATC	4 cut(s)	185, 803, 1115, 1121
Bpu10I	CCTNAGC	1 cut(s)	172
Bpu14I	TTCGAA	1 cut(s)	1176
BpuEI	CTTGAG	1 cut(s)	1120
BpuMI	CCSGG	2 cut(s)	290, 565
BsaBI	GATNNNNATC	1 cut(s)	81
BsaJI	CCNNGG	3 cut(s)	121, 454, 564
BsaWI	WCCGGW	3 cut(s)	179, 1208, 1229
Bsc4I	CCNNNNNNNGG	3 cut(s)	186, 296, 1067
Bse118I	RCCGGY	2 cut(s)	966, 1208
Bse1I	ACTGG	1 cut(s)	701
Bse3DI	GCAATG	4 cut(s)	65, 963, 1042, 1049
Bse8I	GATNNNNATC	1 cut(s)	81
BseAI	TCCGGA	1 cut(s)	179
BseDI	CCNNGG	3 cut(s)	121, 454, 564
BseGI	GGATG	4 cut(s)	176, 191, 697, 1106
BseJI	GATNNNNATC	1 cut(s)	81
BseLI	CCNNNNNNNGG	3 cut(s)	186, 296, 1067
BseMI	GCAATG	4 cut(s)	65, 963, 1042, 1049
BseMII	CTCAG	1 cut(s)	645
BseNI	ACTGG	1 cut(s)	701
Bsh1236I	CGCG	2 cut(s)	545, 680
BshTI	ACCGGT	1 cut(s)	1208
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiHKCI	CYCGRG	2 cut(s)	353, 975
BsiSI	CCGG	6 cut(s)	180, 290, 564, 967, 1209, 1230
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	186, 296, 1067
BsmAI	GTCTC	1 cut(s)	340
BsmBI	CGTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	146
BsmI	GAATGC	1 cut(s)	1094
BsoBI	CYCGRG	2 cut(s)	353, 975
Bsp119I	TTCGAA	1 cut(s)	1176
Bsp1286I	GDGCHC	1 cut(s)	1191
Bsp13I	TCCGGA	1 cut(s)	179
Bsp143I	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	4 cut(s)	543, 803, 1110, 1244
BspCNI	CTCAG	1 cut(s)	644
BspEI	TCCGGA	1 cut(s)	179
BspFNI	CGCG	2 cut(s)	545, 680
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	30, 162, 270
BspPI	GGATC	4 cut(s)	263, 276, 379, 835
BspT104I	TTCGAA	1 cut(s)	1176
BsrDI	GCAATG	4 cut(s)	65, 963, 1042, 1049
BsrFI	RCCGGY	2 cut(s)	966, 1208
BsrI	ACTGG	1 cut(s)	701
BssAI	RCCGGY	2 cut(s)	966, 1208
BssECI	CCNNGG	3 cut(s)	121, 454, 564
BssMI	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
BssT1I	CCWWGG	2 cut(s)	121, 454
Bst4CI	ACNGT	2 cut(s)	214, 236
Bst6I	CTCTTC	1 cut(s)	419
BstBI	TTCGAA	1 cut(s)	1176
BstC8I	GCNNGC	1 cut(s)	461
BstDEI	CTNAG	7 cut(s)	172, 191, 278, 631, 875, 921, 1013
BstDSI	CCRYGG	1 cut(s)	121
BstF5I	GGATG	4 cut(s)	176, 191, 697, 1106
BstFNI	CGCG	2 cut(s)	545, 680
BstHHI	GCGC	2 cut(s)	695, 1106
BstKTI	GATC	9 cut(s)	201, 222, 271, 284, 387, 830, 849, 1075, 1149
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
BstMWI	GCNNNNNNNGC	2 cut(s)	800, 926
BstNSI	RCATGY	1 cut(s)	25
BstSCI	CCNGG	2 cut(s)	288, 563
BstUI	CGCG	2 cut(s)	545, 680
BstX2I	RGATCY	2 cut(s)	268, 1146
BstYI	RGATCY	2 cut(s)	268, 1146
BtgI	CCRYGG	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	326
BtsCI	GGATG	4 cut(s)	176, 191, 697, 1106
BtsIMutI	CAGTG	1 cut(s)	804
Cac8I	GCNNGC	1 cut(s)	461
CciI	TCATGA	1 cut(s)	345
CfoI	GCGC	2 cut(s)	695, 1106
Cfr10I	RCCGGY	2 cut(s)	966, 1208
Cfr13I	GGNCC	1 cut(s)	160
CseI	GACGC	1 cut(s)	962
Csp6I	GTAC	1 cut(s)	1017
CspAI	ACCGGT	1 cut(s)	1208
CviAII	CATG	8 cut(s)	22, 122, 346, 439, 478, 727, 934, 1128
CviQI	GTAC	1 cut(s)	1017
DdeI	CTNAG	7 cut(s)	172, 191, 278, 631, 875, 921, 1013
DpnI	GATC	9 cut(s)	200, 221, 270, 283, 386, 829, 848, 1074, 1148
DpnII	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
DrdI	GACNNNNNNGTC	1 cut(s)	635
DseDI	GACNNNNNNGTC	1 cut(s)	635
Eam1104I	CTCTTC	1 cut(s)	419
EarI	CTCTTC	1 cut(s)	419
Eco130I	CCWWGG	2 cut(s)	121, 454
Eco47I	GGWCC	1 cut(s)	160
Eco88I	CYCGRG	2 cut(s)	353, 975
EcoRI	GAATTC	1 cut(s)	449
EcoT14I	CCWWGG	2 cut(s)	121, 454
EcoT22I	ATGCAT	1 cut(s)	796
ErhI	CCWWGG	2 cut(s)	121, 454
Esp3I	CGTCTC	1 cut(s)	340
FaeI	CATG	8 cut(s)	25, 125, 349, 442, 481, 730, 937, 1131
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	8 cut(s)	21, 121, 345, 438, 477, 726, 933, 1127
FbaI	TGATCA	1 cut(s)	198
FokI	GGATG	4 cut(s)	163, 198, 684, 1093
FspBI	CTAG	5 cut(s)	365, 375, 389, 1025, 1032
GlaI	GCGC	2 cut(s)	694, 1105
HapII	CCGG	6 cut(s)	180, 290, 564, 967, 1209, 1230
HgaI	GACGC	1 cut(s)	962
HhaI	GCGC	2 cut(s)	695, 1106
Hin1II	CATG	8 cut(s)	25, 125, 349, 442, 481, 730, 937, 1131
Hin6I	GCGC	2 cut(s)	693, 1104
HinP1I	GCGC	2 cut(s)	693, 1104
HincII	GTYRAC	1 cut(s)	910
HindII	GTYRAC	1 cut(s)	910
HindIII	AAGCTT	1 cut(s)	872
HpaII	CCGG	6 cut(s)	180, 290, 564, 967, 1209, 1230
HphI	GGTGA	4 cut(s)	202, 407, 679, 1082
Hpy166II	GTNNAC	1 cut(s)	910
Hpy188I	TCNGA	5 cut(s)	28, 634, 832, 1172, 1196
Hpy188III	TCNNGA	7 cut(s)	180, 346, 382, 619, 975, 1002, 1099
Hpy8I	GTNNAC	1 cut(s)	910
HpyAV	CCTTC	4 cut(s)	386, 510, 599, 793
HpyCH4III	ACNGT	2 cut(s)	214, 236
HpyCH4IV	ACGT	3 cut(s)	325, 423, 753
HpyCH4V	TGCA	3 cut(s)	371, 780, 794
HpyF10VI	GCNNNNNNNGC	2 cut(s)	800, 926
HpyF3I	CTNAG	7 cut(s)	172, 191, 278, 631, 875, 921, 1013
HpySE526I	ACGT	3 cut(s)	325, 423, 753
Hsp92II	CATG	8 cut(s)	25, 125, 349, 442, 481, 730, 937, 1131
HspAI	GCGC	2 cut(s)	693, 1104
Kpn2I	TCCGGA	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	198
Kzo9I	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
LmnI	GCTCC	3 cut(s)	28, 596, 1091
LweI	GCATC	4 cut(s)	185, 803, 1115, 1121
MaeI	CTAG	5 cut(s)	365, 375, 389, 1025, 1032
MaeII	ACGT	3 cut(s)	325, 423, 753
MaeIII	GTNAC	5 cut(s)	395, 812, 937, 1027, 1136
MalI	GATC	9 cut(s)	200, 221, 270, 283, 386, 829, 848, 1074, 1148
MboI	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
MboII	GAAGA	8 cut(s)	58, 71, 334, 406, 488, 742, 851, 1049
MflI	RGATCY	2 cut(s)	268, 1146
MhlI	GDGCHC	1 cut(s)	1191
MluCI	AATT	2 cut(s)	449, 743
MluI	ACGCGT	1 cut(s)	678
MlyI	GAGTC	5 cut(s)	423, 623, 663, 1090, 1161
MmeI	TCCRAC	3 cut(s)	6, 406, 574
MnlI	CCTC	4 cut(s)	176, 362, 516, 628
Mph1103I	ATGCAT	1 cut(s)	796
MroI	TCCGGA	1 cut(s)	179
MseI	TTAA	7 cut(s)	42, 129, 249, 405, 648, 818, 1142
MslI	CAYNNNNRTG	5 cut(s)	344, 476, 479, 725, 1132
MspI	CCGG	6 cut(s)	180, 290, 564, 967, 1209, 1230
MspR9I	CCNGG	2 cut(s)	290, 565
Mva1269I	GAATGC	1 cut(s)	1094
MvnI	CGCG	2 cut(s)	545, 680
MwoI	GCNNNNNNNGC	2 cut(s)	800, 926
NciI	CCSGG	2 cut(s)	290, 565
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
NlaIII	CATG	8 cut(s)	25, 125, 349, 442, 481, 730, 937, 1131
NlaIV	GGNNCC	3 cut(s)	30, 162, 270
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	796
NspI	RCATGY	1 cut(s)	25
NspV	TTCGAA	1 cut(s)	1176
PaeR7I	CTCGAG	2 cut(s)	353, 975
PagI	TCATGA	1 cut(s)	345
PciI	ACATGT	1 cut(s)	21
PctI	GAATGC	1 cut(s)	1094
PfeI	GAWTC	6 cut(s)	62, 526, 839, 856, 1173, 1197
PinAI	ACCGGT	1 cut(s)	1208
PleI	GAGTC	5 cut(s)	423, 623, 662, 1089, 1161
PpsI	GAGTC	5 cut(s)	423, 623, 662, 1089, 1161
PscI	ACATGT	1 cut(s)	21
PsiI	TTATAA	1 cut(s)	81
Psp1406I	AACGTT	2 cut(s)	423, 753
PspN4I	GGNNCC	3 cut(s)	30, 162, 270
PspPI	GGNCC	1 cut(s)	160
PspXI	VCTCGAGB	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	268, 1146
RsaI	GTAC	1 cut(s)	1018
RsaNI	GTAC	1 cut(s)	1017
RseI	CAYNNNNRTG	5 cut(s)	344, 476, 479, 725, 1132
SaqAI	TTAA	7 cut(s)	42, 129, 249, 405, 648, 818, 1142
Sau3AI	GATC	9 cut(s)	198, 219, 268, 281, 384, 827, 846, 1072, 1146
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	5 cut(s)	423, 623, 663, 1090, 1161
ScrFI	CCNGG	2 cut(s)	290, 565
SduI	GDGCHC	1 cut(s)	1191
SfaNI	GCATC	4 cut(s)	185, 803, 1115, 1121
Sfr274I	CTCGAG	2 cut(s)	353, 975
SfuI	TTCGAA	1 cut(s)	1176
SinI	GGWCC	1 cut(s)	160
SlaI	CTCGAG	2 cut(s)	353, 975
SmiMI	CAYNNNNRTG	5 cut(s)	344, 476, 479, 725, 1132
SmlI	CTYRAG	3 cut(s)	353, 975, 1099
SmoI	CTYRAG	3 cut(s)	353, 975, 1099
SpeI	ACTAGT	2 cut(s)	374, 1024
Sse9I	AATT	2 cut(s)	449, 743
SsiI	CCGC	4 cut(s)	543, 803, 1110, 1244
SspMI	CTAG	5 cut(s)	365, 375, 389, 1025, 1032
StyD4I	CCNGG	2 cut(s)	288, 563
StyI	CCWWGG	2 cut(s)	121, 454
TaaI	ACNGT	2 cut(s)	214, 236
TaiI	ACGT	3 cut(s)	328, 426, 756
TaqI	TCGA	5 cut(s)	354, 643, 976, 1176, 1264
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	449, 743
TatI	WGTACW	1 cut(s)	1016
TfiI	GAWTC	6 cut(s)	62, 526, 839, 856, 1173, 1197
Tru1I	TTAA	7 cut(s)	42, 129, 249, 405, 648, 818, 1142
Tru9I	TTAA	7 cut(s)	42, 129, 249, 405, 648, 818, 1142
TscAI	CASTG	1 cut(s)	804
TseFI	GTSAC	1 cut(s)	395
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	7 cut(s)	72, 334, 362, 427, 460, 743, 775
TspGWI	ACGGA	1 cut(s)	1050
TspRI	CASTG	1 cut(s)	804
VpaK11BI	GGWCC	1 cut(s)	160
XapI	RAATTY	1 cut(s)	449
XceI	RCATGY	1 cut(s)	25
XhoI	CTCGAG	2 cut(s)	353, 975
XspI	CTAG	5 cut(s)	365, 375, 389, 1025, 1032
Zsp2I	ATGCAT	1 cut(s)	796

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.