Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Reverse (-)

35831111 .. 35837481

Gene Structure 6371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0306600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGAAGGCTGGGTCTTCGGAACCTCCAACTAATCTCGCAAGTCCAGCTTCATTTCGACCGAGAGCTCATGTTGCTGCATCTTATACTCCTTCAATGGAGAAGGGTCATCCCGTCTTACAGGGACTTCTGGCAATAGATTTTCTAGCAAAAGAGGCAAGTTTTAGCGTGGTTGGTTGGGCACAAGATATGCCTAAATTTGATGGTGACCTTGCGAAGTATGTTCAAACTTTTCTGGAGCGAACCTATGAAAGATGCCAAACCTCATACATGGAGGATAACCTGATTCGTGATGACAACAAGCTTATATTGCTGGCTTCCCTCAGTGATTCATTGGAGTATGTTGCAGAGTCTATTGAAAGTTTTTCCACGGGTTTCACCAGCGTGCATGGTGAGAGTCCGTCCGCGGAATATGCAAAGTTGAGGAAGGAGTCACTAGAAAGTGAATTTGGACATTCTTTCTACTGCCTACCGTTTTGGTCCATTTTTGGCTTTCTAACAATCTGGCAATTCTCTGTTCAAGACATAAGGAAACGTGCCATCAAGGTTAAACATGACGAACTTTTTACCCCTCTTTTTACTGACTTACTAGCATATGGGAAACTTTGGATGCTATATGTAACTCAGTTTATGAATATTGTGCAGCAATGTGAATATTCAAATGTTAAAGCTACTGAACTGATTCTCCCACAGTTTGGTTTTGAAAGATCACATGTCTTCCAAACTGGGCTTCTTGCATGTAACAACTCATGTGTAGCGTGGCTTTTGATGTGGGAATATTATTATTCAATTGCAGAGAATGGTGTCAGAAGTAGAAGAAAGAAAATAGGAGCAGCAGGAGCAGGCATTAGTAGTGGCTGTACATACCTCCAACAATATGGAGTATTTGCTATCTCACCAAGCATAATTAACACCCTATTTGGGACACCCACAAGCCATGGTGAGGCCCAACCGCTACTTGCATCTTGTAGCCCTATGTTCAAGCTACGCTACGGTATCCGGAAGTCGCAAATCCGTCGCCGGGAAGCCTCCTTTCCGGCCTTGCCAAGTTGCCTCCACAATATGACTTTCTACATGCTTCTTGAACTAGCTAGAATTGTATGGTTGCTTGTCCCACATCGAAGAACAAGTAAAGGAGATGGCTTCCTTGACTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

384

Amino Acids

43.42

Weight (kDa)

8.04

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1153
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	996
AciI	CCGC	3 cut(s)	402, 404, 950
AcsI	RAATTY	2 cut(s)	194, 443
AfaI	GTAC	1 cut(s)	859
AfiI	CCNNNNNNNGG	4 cut(s)	692, 918, 940, 1018
AflIII	ACRYGT	1 cut(s)	709
AgsI	TTSAA	9 cut(s)	93, 224, 356, 518, 657, 701, 786, 979, 1082
AjuI	GAANNNNNNNTTGG	4 cut(s)	429, 461, 711, 743
AleI	CACNNNNGTG	1 cut(s)	380
AloI	GAACNNNNNNTCC	2 cut(s)	666, 698
AluBI	AGCT	6 cut(s)	47, 65, 301, 668, 982, 1088
AluI	AGCT	6 cut(s)	47, 65, 301, 668, 982, 1088
Alw21I	GWGCWC	1 cut(s)	67
Aor13HI	TCCGGA	1 cut(s)	996
AoxI	GGCC	2 cut(s)	942, 1035
ApeKI	GCWGC	3 cut(s)	74, 640, 830
ApoI	RAATTY	2 cut(s)	194, 443
Asp700I	GAANNNNTTC	1 cut(s)	678
AspS9I	GGNCC	2 cut(s)	477, 943
AsuC2I	CCSGG	1 cut(s)	1019
AsuHPI	GGTGA	5 cut(s)	215, 367, 401, 885, 950
AvaII	GGWCC	1 cut(s)	477
BaeGI	GKGCMC	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	67
BbsI	GAAGAC	2 cut(s)	6, 706
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	61, 652, 842
BccI	CCATC	3 cut(s)	194, 545, 1130
BcgI	CGANNNNNNTGC	2 cut(s)	995, 1029
BciVI	GTATCC	1 cut(s)	1004
BcnI	CCSGG	1 cut(s)	1019
BfaI	CTAG	5 cut(s)	143, 434, 587, 1085, 1089
BfuI	GTATCC	1 cut(s)	1004
BisI	GCNGC	3 cut(s)	75, 641, 831
BlsI	GCNGC	3 cut(s)	76, 642, 832
Bme1390I	CCNGG	1 cut(s)	1019
Bme18I	GGWCC	1 cut(s)	477
BmgT120I	GGNCC	2 cut(s)	477, 943
BmiI	GGNNCC	1 cut(s)	21
BmrFI	CCNGG	1 cut(s)	1019
BmrI	ACTGGG	1 cut(s)	732
BmsI	GCATC	4 cut(s)	86, 242, 597, 968
BmuI	ACTGGG	1 cut(s)	732
BpiI	GAAGAC	2 cut(s)	6, 706
BpmI	CTGGAG	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	1019
BsaJI	CCNNGG	3 cut(s)	366, 402, 934
BsaWI	WCCGGW	1 cut(s)	996
BsaXI	ACNNNNNCTCC	2 cut(s)	666, 696
Bsc4I	CCNNNNNNNGG	4 cut(s)	692, 918, 940, 1018
Bse1I	ACTGG	1 cut(s)	727
Bse3DI	GCAATG	1 cut(s)	650
BseAI	TCCGGA	1 cut(s)	996
BseDI	CCNNGG	3 cut(s)	366, 402, 934
BseGI	GGATG	2 cut(s)	106, 612
BseLI	CCNNNNNNNGG	4 cut(s)	692, 918, 940, 1018
BseMI	GCAATG	1 cut(s)	650
BseMII	CTCAG	2 cut(s)	334, 635
BseNI	ACTGG	1 cut(s)	727
BseSI	GKGCMC	1 cut(s)	181
BseXI	GCAGC	3 cut(s)	61, 652, 842
BseYI	CCCAGC	1 cut(s)	8
BsgI	GTGCAG	1 cut(s)	659
Bsh1236I	CGCG	1 cut(s)	404
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	2 cut(s)	944, 1037
BsiEI	CGRYCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	3 cut(s)	997, 1018, 1034
BslFI	GGGAC	3 cut(s)	135, 934, 1094
BslI	CCNNNNNNNGG	4 cut(s)	692, 918, 940, 1018
BsmFI	GGGAC	3 cut(s)	135, 934, 1094
BsnI	GGCC	2 cut(s)	944, 1037
Bsp1286I	GDGCHC	2 cut(s)	67, 181
Bsp13I	TCCGGA	1 cut(s)	996
Bsp1407I	TGTACA	1 cut(s)	857
Bsp143I	GATC	1 cut(s)	704
Bsp19I	CCATGG	1 cut(s)	934
BspACI	CCGC	3 cut(s)	402, 404, 950
BspANI	GGCC	2 cut(s)	944, 1037
BspCNI	CTCAG	2 cut(s)	333, 634
BspEI	TCCGGA	1 cut(s)	996
BspFNI	CGCG	1 cut(s)	404
BspLI	GGNNCC	1 cut(s)	21
BsrDI	GCAATG	1 cut(s)	650
BsrGI	TGTACA	1 cut(s)	857
BsrI	ACTGG	1 cut(s)	727
BssECI	CCNNGG	3 cut(s)	366, 402, 934
BssMI	GATC	1 cut(s)	704
BssT1I	CCWWGG	1 cut(s)	934
Bst4CI	ACNGT	3 cut(s)	471, 690, 992
BstAUI	TGTACA	1 cut(s)	857
BstC8I	GCNNGC	3 cut(s)	312, 383, 841
BstDEI	CTNAG	2 cut(s)	320, 621
BstDSI	CCRYGG	3 cut(s)	366, 402, 934
BstEII	GGTNACC	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	106, 612
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	707
BstMBI	GATC	1 cut(s)	704
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	6 cut(s)	44, 71, 152, 307, 410, 836
BstNSI	RCATGY	3 cut(s)	713, 738, 1075
BstPI	GGTNACC	1 cut(s)	203
BstSCI	CCNGG	1 cut(s)	1017
BstSLI	GKGCMC	1 cut(s)	181
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	3 cut(s)	61, 652, 842
BstV2I	GAAGAC	2 cut(s)	6, 706
BstXI	CCANNNNNNTGG	1 cut(s)	875
BsuI	GTATCC	1 cut(s)	1004
BsuRI	GGCC	2 cut(s)	944, 1037
BtgI	CCRYGG	3 cut(s)	366, 402, 934
BtsCI	GGATG	2 cut(s)	106, 612
BtsIMutI	CAGTG	1 cut(s)	328
Cac8I	GCNNGC	3 cut(s)	312, 383, 841
Cfr13I	GGNCC	2 cut(s)	477, 943
Cfr42I	CCGCGG	1 cut(s)	405
Csp6I	GTAC	1 cut(s)	858
CviAII	CATG	9 cut(s)	68, 268, 386, 551, 710, 735, 747, 935, 1072
CviQI	GTAC	1 cut(s)	858
DdeI	CTNAG	2 cut(s)	320, 621
DpnI	GATC	1 cut(s)	706
DpnII	GATC	1 cut(s)	704
Ecl136II	GAGCTC	1 cut(s)	65
Eco130I	CCWWGG	1 cut(s)	934
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	477
Eco53kI	GAGCTC	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	65
EcoO65I	GGTNACC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	934
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	934
FaeI	CATG	9 cut(s)	71, 271, 389, 554, 713, 738, 750, 938, 1075
FalI	AAGNNNNNCTT	2 cut(s)	31, 63
FaqI	GGGAC	3 cut(s)	135, 934, 1094
FatI	CATG	9 cut(s)	67, 267, 385, 550, 709, 734, 746, 934, 1071
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	3 cut(s)	75, 641, 831
FokI	GGATG	2 cut(s)	93, 619
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	75, 641, 831
FspBI	CTAG	5 cut(s)	143, 434, 587, 1085, 1089
GluI	GCNGC	3 cut(s)	75, 641, 831
GsaI	CCCAGC	1 cut(s)	12
GsuI	CTGGAG	1 cut(s)	254
HaeIII	GGCC	2 cut(s)	944, 1037
HapII	CCGG	3 cut(s)	997, 1018, 1034
Hin1II	CATG	9 cut(s)	71, 271, 389, 554, 713, 738, 750, 938, 1075
HindIII	AAGCTT	1 cut(s)	299
HinfI	GANTC	6 cut(s)	283, 326, 347, 394, 428, 679
HpaII	CCGG	3 cut(s)	997, 1018, 1034
HphI	GGTGA	5 cut(s)	215, 367, 401, 885, 950
Hpy188I	TCNGA	2 cut(s)	19, 806
Hpy188III	TCNNGA	5 cut(s)	233, 287, 518, 997, 1079
Hpy99I	CGWCG	1 cut(s)	1017
HpyAV	CCTTC	3 cut(s)	94, 99, 418
HpyCH4III	ACNGT	3 cut(s)	471, 690, 992
HpyCH4IV	ACGT	1 cut(s)	532
HpyCH4V	TGCA	8 cut(s)	77, 344, 385, 413, 640, 734, 791, 959
HpyF10VI	GCNNNNNNNGC	6 cut(s)	44, 71, 152, 307, 410, 836
HpyF3I	CTNAG	2 cut(s)	320, 621
HpySE526I	ACGT	1 cut(s)	532
Hsp92II	CATG	9 cut(s)	71, 271, 389, 554, 713, 738, 750, 938, 1075
Kpn2I	TCCGGA	1 cut(s)	996
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	1 cut(s)	704
LmnI	GCTCC	3 cut(s)	235, 827, 836
Lsp1109I	GCAGC	3 cut(s)	61, 652, 842
LweI	GCATC	4 cut(s)	86, 242, 597, 968
MaeI	CTAG	5 cut(s)	143, 434, 587, 1085, 1089
MaeII	ACGT	1 cut(s)	532
MaeIII	GTNAC	4 cut(s)	203, 429, 616, 737
MalI	GATC	1 cut(s)	706
MboI	GATC	1 cut(s)	704
MboII	GAAGA	4 cut(s)	6, 706, 825, 1131
MfeI	CAATTG	1 cut(s)	786
MhlI	GDGCHC	2 cut(s)	67, 181
MluCI	AATT	6 cut(s)	194, 443, 506, 786, 903, 1092
MlyI	GAGTC	3 cut(s)	356, 403, 437
MmeI	TCCRAC	2 cut(s)	50, 892
MroI	TCCGGA	1 cut(s)	996
MroXI	GAANNNNTTC	1 cut(s)	678
MseI	TTAA	3 cut(s)	546, 663, 906
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	3 cut(s)	997, 1018, 1034
MspR9I	CCNGG	1 cut(s)	1019
MunI	CAATTG	1 cut(s)	786
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	6 cut(s)	44, 71, 152, 307, 410, 836
NciI	CCSGG	1 cut(s)	1019
NcoI	CCATGG	1 cut(s)	934
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	1 cut(s)	704
NlaIII	CATG	9 cut(s)	71, 271, 389, 554, 713, 738, 750, 938, 1075
NlaIV	GGNNCC	1 cut(s)	21
NmuCI	GTSAC	2 cut(s)	203, 429
NspI	RCATGY	3 cut(s)	713, 738, 1075
OliI	CACNNNNGTG	1 cut(s)	380
PciI	ACATGT	1 cut(s)	709
PdmI	GAANNNNTTC	1 cut(s)	678
PfeI	GAWTC	3 cut(s)	283, 326, 679
PflMI	CCANNNNNTGG	1 cut(s)	692
PkrI	GCNGC	3 cut(s)	76, 642, 832
PleI	GAGTC	3 cut(s)	355, 402, 436
PpsI	GAGTC	3 cut(s)	355, 402, 436
PscI	ACATGT	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	1153
Psp124BI	GAGCTC	1 cut(s)	67
PspEI	GGTNACC	1 cut(s)	203
PspFI	CCCAGC	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	21
PspPI	GGNCC	2 cut(s)	477, 943
RsaI	GTAC	1 cut(s)	859
RsaNI	GTAC	1 cut(s)	858
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	67
SacII	CCGCGG	1 cut(s)	405
SaqAI	TTAA	3 cut(s)	546, 663, 906
SatI	GCNGC	3 cut(s)	75, 641, 831
Sau3AI	GATC	1 cut(s)	704
Sau96I	GGNCC	2 cut(s)	477, 943
SchI	GAGTC	3 cut(s)	356, 403, 437
ScrFI	CCNGG	1 cut(s)	1019
SduI	GDGCHC	2 cut(s)	67, 181
SfaNI	GCATC	4 cut(s)	86, 242, 597, 968
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
SinI	GGWCC	1 cut(s)	477
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	6 cut(s)	194, 443, 506, 786, 903, 1092
SsiI	CCGC	3 cut(s)	402, 404, 950
SspI	AATATT	3 cut(s)	634, 653, 776
SspMI	CTAG	5 cut(s)	143, 434, 587, 1085, 1089
SstI	GAGCTC	1 cut(s)	67
StyD4I	CCNGG	1 cut(s)	1017
StyI	CCWWGG	1 cut(s)	934
TaaI	ACNGT	3 cut(s)	471, 690, 992
TaiI	ACGT	1 cut(s)	535
TaqI	TCGA	2 cut(s)	55, 1117
TaqII	GACCGA	1 cut(s)	73
TasI	AATT	6 cut(s)	194, 443, 506, 786, 903, 1092
TatI	WGTACW	1 cut(s)	857
TfiI	GAWTC	3 cut(s)	283, 326, 679
Tru1I	TTAA	3 cut(s)	546, 663, 906
Tru9I	TTAA	3 cut(s)	546, 663, 906
TscAI	CASTG	1 cut(s)	328
TseFI	GTSAC	2 cut(s)	203, 429
TseI	GCWGC	3 cut(s)	74, 640, 830
Tsp45I	GTSAC	2 cut(s)	203, 429
TspDTI	ATGAA	5 cut(s)	17, 39, 261, 318, 644
TspGWI	ACGGA	2 cut(s)	387, 1001
TspRI	CASTG	1 cut(s)	328
Van91I	CCANNNNNTGG	1 cut(s)	692
VpaK11BI	GGWCC	1 cut(s)	477
XapI	RAATTY	2 cut(s)	194, 443
XceI	RCATGY	3 cut(s)	713, 738, 1075
XmnI	GAANNNNTTC	1 cut(s)	678
XspI	CTAG	5 cut(s)	143, 434, 587, 1085, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.