Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Reverse (-)

5039176 .. 5040438

Gene Structure 1263 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1071800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGACGGGAATCCGCGGATCAAGAGTTATCCCGACATTGGAGAAGCTGCTTATGGACAGAAAGGAAGAGTCGCCATCTCCATTTTTATGTACCTTGAGCTGTATTTGGTAGCTGTTGAGTTTCTAATATTAGAAGGTGACAACTTAAGCCAGTTGTTCCCAAGCAAGGGTTTTAACATGGCAGGCCTCAAAGTCGGAGGCAAACAATGCTTTGTTTTGCTCACTGCCCTTGTAATTCTGCCAACGACATGGCTGAAGAGTCTGGGATTGTTGGCGTATGTTTCCGCCGGAGGAGTTTTCGCTTCTCTTTTTTTGGTTGCCTGCGTATTTTGGGTTGGTGCGGTTGATGGTGTAGGGTTTCATGAAGGAGATGTTCTTCTGAATTTCAGAGGATTGCCTACTGCTGTATTACTTATCTGCTTCGTTGCAAGCACCATCACCTACGGATCAATGGCGGTTTTAGGTTACTTGATGTTCGGACAAGAATTGAAGTCTCAAGTCACATTAAATCTTCCAGTACGAAAAATTAGTTCAAGGATAGCAATTTACATTACTATAATTAATCCCCTCACAAAGTATGCAATTATAATCACTCCGATTGCTGCTGCTATTGAGGATACACGCCCTTTTCGCAATAGTCTCACAATTAGCATCTTCGTGCGAACCTTAATTGTAATTAGCACCGTAATTGTGGCCTTGGCCATTCCCTTTTTTAGCTACTTAATGGCTTTAATCGGCGCATCTCTGAACGTGATGGTCTCAGTCTTGCTGCCGTGCTTGTTCTACCTCAAGATTAACGTTGCTGCTCGGAGATTCGGGTTCGAGTTGGTGGTAATTGTTGCGATTATGGTAATAGGGTCTTTTGTTGGCGTAGTGGGTACGTACACTTCTGTGAAACAAATTGTAAGACAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

306

Amino Acids

33.12

Weight (kDa)

9.35

Isoelectric Point (pI)

21.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	4 - 113	1.7e-12	Transmembrane amino acid transporter protein
Aa_trans	PF01490	134 - 295	2.5e-20	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	587
AccII	CGCG	1 cut(s)	16
AciI	CCGC	5 cut(s)	14, 16, 285, 341, 455
AclI	AACGTT	1 cut(s)	798
AclWI	GGATC	2 cut(s)	26, 454
AcoI	YGGCCR	1 cut(s)	699
AcsI	RAATTY	1 cut(s)	382
AcuI	CTGAAG	1 cut(s)	275
AfaI	GTAC	4 cut(s)	92, 519, 880, 884
AfiI	CCNNNNNNNGG	3 cut(s)	38, 166, 167
AflII	CTTAAG	1 cut(s)	145
AgsI	TTSAA	2 cut(s)	490, 534
AleI	CACNNNNGTG	1 cut(s)	890
AluBI	AGCT	4 cut(s)	47, 100, 113, 717
AluI	AGCT	4 cut(s)	47, 100, 113, 717
Alw26I	GTCTC	3 cut(s)	498, 644, 763
AlwI	GGATC	2 cut(s)	26, 454
AoxI	GGCC	3 cut(s)	184, 693, 699
ApeKI	GCWGC	5 cut(s)	47, 602, 605, 769, 803
ApoI	RAATTY	1 cut(s)	382
AseI	ATTAAT	1 cut(s)	561
AspLEI	GCGC	1 cut(s)	740
AsuHPI	GGTGA	2 cut(s)	149, 430
BalI	TGGCCA	1 cut(s)	701
BarI	GAAGNNNNNNTAC	2 cut(s)	871, 903
BbvI	GCAGC	5 cut(s)	34, 589, 592, 756, 790
BccI	CCATC	4 cut(s)	83, 341, 443, 748
BceAI	ACGGC	1 cut(s)	757
BciVI	GTATCC	1 cut(s)	610
BcoDI	GTCTC	3 cut(s)	498, 644, 763
BfrI	CTTAAG	1 cut(s)	145
BfuI	GTATCC	1 cut(s)	610
BisI	GCNGC	5 cut(s)	48, 603, 606, 770, 804
BlsI	GCNGC	5 cut(s)	49, 604, 607, 771, 805
BmsI	GCATC	2 cut(s)	660, 749
BpuEI	CTTGAG	3 cut(s)	116, 480, 773
BsaAI	YACGTR	1 cut(s)	882
BsaI	GGTCTC	1 cut(s)	763
BsaJI	CCNNGG	2 cut(s)	14, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 166, 167
Bse1I	ACTGG	2 cut(s)	151, 515
BseDI	CCNNGG	2 cut(s)	14, 696
BseLI	CCNNNNNNNGG	3 cut(s)	38, 166, 167
BseMII	CTCAG	1 cut(s)	774
BseNI	ACTGG	2 cut(s)	151, 515
BseRI	GAGGAG	1 cut(s)	306
BseXI	GCAGC	5 cut(s)	34, 589, 592, 756, 790
Bsh1236I	CGCG	1 cut(s)	16
BshFI	GGCC	3 cut(s)	186, 695, 701
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	3 cut(s)	38, 166, 167
BsmAI	GTCTC	3 cut(s)	498, 644, 763
BsnI	GGCC	3 cut(s)	186, 695, 701
Bso31I	GGTCTC	1 cut(s)	763
Bsp143I	GATC	2 cut(s)	18, 446
BspACI	CCGC	5 cut(s)	14, 16, 285, 341, 455
BspANI	GGCC	3 cut(s)	186, 695, 701
BspCNI	CTCAG	1 cut(s)	773
BspFNI	CGCG	1 cut(s)	16
BspHI	TCATGA	1 cut(s)	361
BspPI	GGATC	2 cut(s)	26, 454
BspTI	CTTAAG	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	763
BsrI	ACTGG	2 cut(s)	151, 515
BssECI	CCNNGG	2 cut(s)	14, 696
BssMI	GATC	2 cut(s)	18, 446
BssT1I	CCWWGG	1 cut(s)	696
Bst4CI	ACNGT	1 cut(s)	685
Bst6I	CTCTTC	2 cut(s)	61, 251
BstAFI	CTTAAG	1 cut(s)	145
BstAPI	GCANNNNNTGC	1 cut(s)	207
BstBAI	YACGTR	1 cut(s)	882
BstC8I	GCNNGC	3 cut(s)	184, 322, 430
BstDEI	CTNAG	1 cut(s)	760
BstDSI	CCRYGG	1 cut(s)	14
BstFNI	CGCG	1 cut(s)	16
BstHHI	GCGC	1 cut(s)	740
BstKTI	GATC	2 cut(s)	21, 449
BstMAI	GTCTC	3 cut(s)	498, 644, 763
BstMBI	GATC	2 cut(s)	18, 446
BstMWI	GCNNNNNNNGC	2 cut(s)	207, 630
BstSNI	TACGTA	1 cut(s)	882
BstUI	CGCG	1 cut(s)	16
BstV1I	GCAGC	5 cut(s)	34, 589, 592, 756, 790
BstXI	CCANNNNNNTGG	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	610
BsuRI	GGCC	3 cut(s)	186, 695, 701
BtgI	CCRYGG	1 cut(s)	14
BtsI	GCAGTG	1 cut(s)	222
BtsIMutI	CAGTG	1 cut(s)	222
Cac8I	GCNNGC	3 cut(s)	184, 322, 430
CciI	TCATGA	1 cut(s)	361
CfoI	GCGC	1 cut(s)	740
Cfr42I	CCGCGG	1 cut(s)	17
Csp6I	GTAC	4 cut(s)	91, 518, 879, 883
CviAII	CATG	3 cut(s)	178, 249, 362
CviQI	GTAC	4 cut(s)	91, 518, 879, 883
DdeI	CTNAG	1 cut(s)	760
DpnI	GATC	2 cut(s)	20, 448
DpnII	GATC	2 cut(s)	18, 446
EaeI	YGGCCR	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	61, 251
EarI	CTCTTC	2 cut(s)	61, 251
EciI	GGCGGA	1 cut(s)	274
Eco105I	TACGTA	1 cut(s)	882
Eco130I	CCWWGG	1 cut(s)	696
Eco147I	AGGCCT	1 cut(s)	186
Eco31I	GGTCTC	1 cut(s)	763
Eco57I	CTGAAG	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	696
ErhI	CCWWGG	1 cut(s)	696
FaeI	CATG	3 cut(s)	181, 252, 365
FatI	CATG	3 cut(s)	177, 248, 361
Fnu4HI	GCNGC	5 cut(s)	48, 603, 606, 770, 804
Fsp4HI	GCNGC	5 cut(s)	48, 603, 606, 770, 804
GlaI	GCGC	1 cut(s)	739
GluI	GCNGC	5 cut(s)	48, 603, 606, 770, 804
HaeIII	GGCC	3 cut(s)	186, 695, 701
HapII	CCGG	1 cut(s)	288
HhaI	GCGC	1 cut(s)	740
Hin1II	CATG	3 cut(s)	181, 252, 365
Hin6I	GCGC	1 cut(s)	738
HinP1I	GCGC	1 cut(s)	738
HinfI	GANTC	4 cut(s)	10, 69, 259, 813
HpaII	CCGG	1 cut(s)	288
HphI	GGTGA	2 cut(s)	149, 430
Hpy166II	GTNNAC	1 cut(s)	885
Hpy188I	TCNGA	8 cut(s)	197, 381, 389, 479, 597, 747, 810, 917
Hpy188III	TCNNGA	4 cut(s)	22, 32, 362, 790
Hpy8I	GTNNAC	1 cut(s)	885
HpyAV	CCTTC	2 cut(s)	128, 359
HpyCH4III	ACNGT	1 cut(s)	685
HpyCH4IV	ACGT	3 cut(s)	750, 798, 881
HpyCH4V	TGCA	2 cut(s)	428, 581
HpyF10VI	GCNNNNNNNGC	2 cut(s)	207, 630
HpyF3I	CTNAG	1 cut(s)	760
HpySE526I	ACGT	3 cut(s)	750, 798, 881
Hsp92II	CATG	3 cut(s)	181, 252, 365
HspAI	GCGC	1 cut(s)	738
KspI	CCGCGG	1 cut(s)	17
Kzo9I	GATC	2 cut(s)	18, 446
LpnPI	CCDG	6 cut(s)	164, 168, 248, 301, 334, 528
Lsp1109I	GCAGC	5 cut(s)	34, 589, 592, 756, 790
LweI	GCATC	2 cut(s)	660, 749
MaeII	ACGT	3 cut(s)	750, 798, 881
MaeIII	GTNAC	3 cut(s)	137, 464, 499
MalI	GATC	2 cut(s)	20, 448
MboI	GATC	2 cut(s)	18, 446
MboII	GAAGA	5 cut(s)	78, 268, 368, 503, 646
MlsI	TGGCCA	1 cut(s)	701
MluNI	TGGCCA	1 cut(s)	701
MlyI	GAGTC	2 cut(s)	78, 268
MmeI	TCCRAC	1 cut(s)	175
MnlI	CCTC	7 cut(s)	191, 197, 284, 383, 578, 607, 797
Mox20I	TGGCCA	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	701
MseI	TTAA	8 cut(s)	146, 174, 506, 561, 668, 722, 731, 795
MslI	CAYNNNNRTG	3 cut(s)	86, 656, 890
Msp20I	TGGCCA	1 cut(s)	701
MspA1I	CMGCKG	1 cut(s)	16
MspCI	CTTAAG	1 cut(s)	145
MspI	CCGG	1 cut(s)	288
MvnI	CGCG	1 cut(s)	16
MwoI	GCNNNNNNNGC	2 cut(s)	207, 630
NdeII	GATC	2 cut(s)	18, 446
NlaIII	CATG	3 cut(s)	181, 252, 365
NmuCI	GTSAC	2 cut(s)	137, 499
OliI	CACNNNNGTG	1 cut(s)	890
PagI	TCATGA	1 cut(s)	361
PceI	AGGCCT	1 cut(s)	186
PfeI	GAWTC	2 cut(s)	10, 813
PkrI	GCNGC	5 cut(s)	49, 604, 607, 771, 805
PleI	GAGTC	2 cut(s)	77, 267
PpsI	GAGTC	2 cut(s)	77, 267
Ppu21I	YACGTR	1 cut(s)	882
PshBI	ATTAAT	1 cut(s)	561
PsiI	TTATAA	1 cut(s)	587
Psp1406I	AACGTT	1 cut(s)	798
RsaI	GTAC	4 cut(s)	92, 519, 880, 884
RsaNI	GTAC	4 cut(s)	91, 518, 879, 883
RseI	CAYNNNNRTG	3 cut(s)	86, 656, 890
SacII	CCGCGG	1 cut(s)	17
SaqAI	TTAA	8 cut(s)	146, 174, 506, 561, 668, 722, 731, 795
SatI	GCNGC	5 cut(s)	48, 603, 606, 770, 804
Sau3AI	GATC	2 cut(s)	18, 446
SchI	GAGTC	2 cut(s)	78, 268
SfaNI	GCATC	2 cut(s)	660, 749
Sfr303I	CCGCGG	1 cut(s)	17
SgrBI	CCGCGG	1 cut(s)	17
SmiMI	CAYNNNNRTG	3 cut(s)	86, 656, 890
SmlI	CTYRAG	4 cut(s)	95, 145, 495, 788
SmoI	CTYRAG	4 cut(s)	95, 145, 495, 788
SnaBI	TACGTA	1 cut(s)	882
SseBI	AGGCCT	1 cut(s)	186
SsiI	CCGC	5 cut(s)	14, 16, 285, 341, 455
SspI	AATATT	1 cut(s)	129
StuI	AGGCCT	1 cut(s)	186
StyI	CCWWGG	1 cut(s)	696
TaaI	ACNGT	1 cut(s)	685
TaiI	ACGT	3 cut(s)	753, 801, 884
TaqI	TCGA	1 cut(s)	822
TfiI	GAWTC	2 cut(s)	10, 813
Tru1I	TTAA	8 cut(s)	146, 174, 506, 561, 668, 722, 731, 795
Tru9I	TTAA	8 cut(s)	146, 174, 506, 561, 668, 722, 731, 795
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	137, 499
TseI	GCWGC	5 cut(s)	47, 602, 605, 769, 803
Tsp45I	GTSAC	2 cut(s)	137, 499
TspDTI	ATGAA	2 cut(s)	350, 378
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	1 cut(s)	229
Vha464I	CTTAAG	1 cut(s)	145
VspI	ATTAAT	1 cut(s)	561
XapI	RAATTY	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.