Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Reverse (-)

30511939 .. 30513523

Gene Structure 1585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1242 bp

ATGGAACTGCACTCCCTCAAAGTAGAGAAGATAGAGAGCCAAATTCAACCACTTGAGCAAAACAAAGGCACTACCTTCTTCAGAACCTGTTTCAATGGACTCAACACATTATCAGGTGTGGGAATACTATCGATTCCATTTGCTCTATCTCAGGGAGGGTGGTTGAGCTTACTGCTTCTCTTCTCGGTAGCAATCCTGTGTTGGTATACAGGGCTGCTTCTACAGCGATGTATGGACTCAAATCCACATATTAAATCATATCCTGACATTGGTCAAGTCGCTTTTGGATGCAAAGGAAGAGTGGCCATATCCATCTTTATGTACCTTGAGCTGTATTTAGTTGCAGTTGAATTTCTTGTACTAGAAGGTGATAACTTAAACCAGTTGTTTCCAAACATGAGTTTCAACATGGCAGGCCACACAGTTGGAGGTAAGCAATGCTTTGTTTTAGCCACTGCCCTTGTAATACTGCCAACTACATGGTTGAAGAGCTTGGGATTGCTGGCATATGTATCTGCTGGCGGAGTTTTGGCTTCGATTATTTTGGTTGTTTGTGTTTTTTGGGTTGGTGCTGTTGATAGTGTGGGATTTGATGCAAGAGGTGATCTCCTGAAATGGGAAGGATTGCCTACTACTGTAAGCTTGTATGTGTTCTGCTACTGTGGACATGCAGTTTTTCCCACATTGTGCAATTCCATGAAAGATAGAAGCCAATTCCCAAAGGTTTTGCTTGTATGCTTCATAACAAGCACCATCACCTATGGATCCATGGCTGTTTTGGGTTACTTGATGTTTGGAGAATATTTGAAGTCTCAAGTGACATTAAATCTTCCAGTACAAAAAATCAGTGCAAAGATAGCCATTTACATCACAATAGTTAACCCTCTGACTAAGTATGCAATTATAATCACTCCAATTGCTACTGCCATAGAGGAGACACGCCATTTTCGCAACAGTCATGCCATTATAAGCATTTTGGTCAGAACAGTGATTGTGATCAGCACTGTCTGTGTGGCGCTGATGGTTCCATTCTTCGGTTATATCATGGCATTTGTTGGTGCTTTTCTGAGTGTCACTGTCTCAATATTGTTGCCATGCCTGTTCTACCTGAAGATTAACAGTGTTGCTCGTAGGATTGGATTCGAGTTGATGACAATTCTTAGCATTATGGTGCTAGGATCTTTCGTTGGGGTAGTGGGTACTTACACTTCTGTAAAACAAATTGTAAACCATCTCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

414

Amino Acids

45.29

Weight (kDa)

8.76

Isoelectric Point (pI)

28.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	23 - 402	4.8e-66	Transmembrane amino acid transporter protein
Trp_Tyr_perm	PF03222	36 - 251	1.7e-07	Tryptophan/tyrosine permease family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	905, 968
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	522
AclWI	GGATC	3 cut(s)	759, 772, 1186
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	2 cut(s)	42, 350
AcuI	CTGAAG	2 cut(s)	64, 1130
AdeI	CACNNNGTG	1 cut(s)	687
AfaI	GTAC	4 cut(s)	323, 360, 837, 1201
AfiI	CCNNNNNNNGG	3 cut(s)	269, 616, 1034
AgsI	TTSAA	6 cut(s)	47, 94, 350, 406, 487, 808
AluBI	AGCT	4 cut(s)	168, 331, 492, 642
AluI	AGCT	4 cut(s)	168, 331, 492, 642
Alw26I	GTCTC	3 cut(s)	816, 929, 1084
AlwI	GGATC	3 cut(s)	759, 772, 1186
AlwNI	CAGNNNCTG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	303, 415
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	42, 350
AspLEI	GCGC	1 cut(s)	1018
AsuHPI	GGTGA	3 cut(s)	380, 614, 748
BalI	TGGCCA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	764
BarI	GAAGNNNNNNTAC	2 cut(s)	1192, 1224
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	4 cut(s)	320, 761, 1015, 1239
BclI	TGATCA	1 cut(s)	996
BcoDI	GTCTC	3 cut(s)	816, 929, 1084
BfaI	CTAG	2 cut(s)	362, 1175
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	1019
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
BmiI	GGNNCC	2 cut(s)	766, 1026
BmsI	GCATC	2 cut(s)	278, 583
BoxI	GACNNNNGTC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	591, 623
BpuEI	CTTGAG	3 cut(s)	74, 347, 798
Bsa29I	ATCGAT	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	995
BsaJI	CCNNGG	1 cut(s)	768
Bsc4I	CCNNNNNNNGG	3 cut(s)	269, 616, 1034
Bse1I	ACTGG	2 cut(s)	382, 833
Bse3DI	GCAATG	1 cut(s)	443
Bse8I	GATNNNNATC	1 cut(s)	995
BseCI	ATCGAT	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	768
BseGI	GGATG	1 cut(s)	293
BseJI	GATNNNNATC	1 cut(s)	995
BseLI	CCNNNNNNNGG	3 cut(s)	269, 616, 1034
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	2 cut(s)	164, 1058
BseNI	ACTGG	2 cut(s)	382, 833
BseRI	GAGGAG	1 cut(s)	947
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	2 cut(s)	305, 417
BshVI	ATCGAT	1 cut(s)	131
BslI	CCNNNNNNNGG	3 cut(s)	269, 616, 1034
BsmAI	GTCTC	3 cut(s)	816, 929, 1084
BsnI	GGCC	2 cut(s)	305, 417
Bsp143I	GATC	4 cut(s)	604, 764, 996, 1178
Bsp19I	CCATGG	1 cut(s)	768
BspACI	CCGC	1 cut(s)	522
BspANI	GGCC	2 cut(s)	305, 417
BspCNI	CTCAG	2 cut(s)	163, 1059
BspDI	ATCGAT	1 cut(s)	131
BspLI	GGNNCC	2 cut(s)	766, 1026
BspPI	GGATC	3 cut(s)	759, 772, 1186
BspQI	GCTCTTC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	443
BsrI	ACTGG	2 cut(s)	382, 833
BssECI	CCNNGG	1 cut(s)	768
BssMI	GATC	4 cut(s)	604, 764, 996, 1178
BssNAI	GTATAC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	768
Bst1107I	GTATAC	1 cut(s)	207
Bst4CI	ACNGT	8 cut(s)	424, 637, 662, 956, 988, 1006, 1078, 1121
Bst6I	CTCTTC	3 cut(s)	185, 292, 482
BstC8I	GCNNGC	3 cut(s)	415, 504, 520
BstDEI	CTNAG	4 cut(s)	150, 891, 1067, 1160
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	1019
BstHHI	GCGC	1 cut(s)	1018
BstKTI	GATC	4 cut(s)	607, 767, 999, 1181
BstMAI	GTCTC	3 cut(s)	816, 929, 1084
BstMBI	GATC	4 cut(s)	604, 764, 996, 1178
BstMWI	GCNNNNNNNGC	3 cut(s)	223, 857, 948
BstNSI	RCATGY	1 cut(s)	671
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSFI	CTRYAG	1 cut(s)	221
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	764, 1178
BstXI	CCANNNNNNTGG	2 cut(s)	425, 480
BstYI	RGATCY	2 cut(s)	764, 1178
BstZ17I	GTATAC	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	131
BsuRI	GGCC	2 cut(s)	305, 417
BsuTUI	ATCGAT	1 cut(s)	131
BtgI	CCRYGG	1 cut(s)	768
BtgZI	GCGATG	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	293
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	6 cut(s)	453, 853, 993, 1002, 1074, 1126
Cac8I	GCNNGC	3 cut(s)	415, 504, 520
CaiI	CAGNNNCTG	1 cut(s)	87
CfoI	GCGC	1 cut(s)	1018
ClaI	ATCGAT	1 cut(s)	131
Csp6I	GTAC	4 cut(s)	322, 359, 836, 1200
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	9 cut(s)	397, 409, 480, 668, 697, 769, 959, 1045, 1095
CviQI	GTAC	4 cut(s)	322, 359, 836, 1200
DdeI	CTNAG	4 cut(s)	150, 891, 1067, 1160
DpnI	GATC	4 cut(s)	606, 766, 998, 1180
DpnII	GATC	4 cut(s)	604, 764, 996, 1178
DraIII	CACNNNGTG	1 cut(s)	687
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	185, 292, 482
EarI	CTCTTC	3 cut(s)	185, 292, 482
EciI	GGCGGA	1 cut(s)	537
Eco130I	CCWWGG	1 cut(s)	768
Eco57I	CTGAAG	2 cut(s)	64, 1130
EcoT14I	CCWWGG	1 cut(s)	768
ErhI	CCWWGG	1 cut(s)	768
FaeI	CATG	9 cut(s)	400, 412, 483, 671, 700, 772, 962, 1048, 1098
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FatI	CATG	9 cut(s)	396, 408, 479, 667, 696, 768, 958, 1044, 1094
FauNDI	CATATG	1 cut(s)	508
FbaI	TGATCA	1 cut(s)	996
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	215
FokI	GGATG	1 cut(s)	300
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	2 cut(s)	362, 1175
GlaI	GCGC	1 cut(s)	1017
GluI	GCNGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	1019
HaeIII	GGCC	2 cut(s)	305, 417
HhaI	GCGC	1 cut(s)	1018
Hin1II	CATG	9 cut(s)	400, 412, 483, 671, 700, 772, 962, 1048, 1098
Hin6I	GCGC	1 cut(s)	1016
HinP1I	GCGC	1 cut(s)	1016
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	4 cut(s)	99, 133, 236, 1140
HpaI	GTTAAC	1 cut(s)	880
HphI	GGTGA	3 cut(s)	380, 614, 748
Hpy166II	GTNNAC	4 cut(s)	207, 665, 880, 1228
Hpy188I	TCNGA	4 cut(s)	83, 888, 983, 1068
Hpy188III	TCNNGA	2 cut(s)	263, 610
Hpy8I	GTNNAC	4 cut(s)	207, 665, 880, 1228
HpyAV	CCTTC	3 cut(s)	85, 359, 614
HpyCH4III	ACNGT	8 cut(s)	424, 637, 662, 956, 988, 1006, 1078, 1121
HpyCH4V	TGCA	8 cut(s)	10, 291, 344, 596, 671, 690, 851, 899
HpyF10VI	GCNNNNNNNGC	3 cut(s)	223, 857, 948
HpyF3I	CTNAG	4 cut(s)	150, 891, 1067, 1160
Hsp92II	CATG	9 cut(s)	400, 412, 483, 671, 700, 772, 962, 1048, 1098
HspAI	GCGC	1 cut(s)	1016
Ksp22I	TGATCA	1 cut(s)	996
KspAI	GTTAAC	1 cut(s)	880
Kzo9I	GATC	4 cut(s)	604, 764, 996, 1178
LguI	GCTCTTC	1 cut(s)	482
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	2 cut(s)	278, 583
MaeI	CTAG	2 cut(s)	362, 1175
MaeIII	GTNAC	3 cut(s)	782, 817, 1072
MalI	GATC	4 cut(s)	606, 766, 998, 1180
MboI	GATC	4 cut(s)	604, 764, 996, 1178
MboII	GAAGA	8 cut(s)	40, 70, 172, 309, 499, 821, 1024, 1123
MfeI	CAATTG	1 cut(s)	915
MflI	RGATCY	2 cut(s)	764, 1178
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	8 cut(s)	42, 350, 691, 713, 900, 915, 1155, 1221
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	2 cut(s)	93, 230
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	6 cut(s)	26, 149, 422, 593, 894, 925
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	6 cut(s)	252, 377, 824, 879, 1116, 1240
MslI	CAYNNNNRTG	2 cut(s)	317, 1169
Msp20I	TGGCCA	1 cut(s)	305
MunI	CAATTG	1 cut(s)	915
MwoI	GCNNNNNNNGC	3 cut(s)	223, 857, 948
NcoI	CCATGG	1 cut(s)	768
NdeI	CATATG	1 cut(s)	508
NdeII	GATC	4 cut(s)	604, 764, 996, 1178
NlaIII	CATG	9 cut(s)	400, 412, 483, 671, 700, 772, 962, 1048, 1098
NlaIV	GGNNCC	2 cut(s)	766, 1026
NmuCI	GTSAC	2 cut(s)	817, 1072
NspI	RCATGY	1 cut(s)	671
PciSI	GCTCTTC	1 cut(s)	482
PfeI	GAWTC	2 cut(s)	133, 1140
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	2 cut(s)	93, 230
PpsI	GAGTC	2 cut(s)	93, 230
PshAI	GACNNNNGTC	1 cut(s)	270
PsiI	TTATAA	2 cut(s)	905, 968
PspN4I	GGNNCC	2 cut(s)	766, 1026
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	764, 1178
RsaI	GTAC	4 cut(s)	323, 360, 837, 1201
RsaNI	GTAC	4 cut(s)	322, 359, 836, 1200
RseI	CAYNNNNRTG	2 cut(s)	317, 1169
SapI	GCTCTTC	1 cut(s)	482
SaqAI	TTAA	6 cut(s)	252, 377, 824, 879, 1116, 1240
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	4 cut(s)	604, 764, 996, 1178
SchI	GAGTC	2 cut(s)	93, 230
SfaNI	GCATC	2 cut(s)	278, 583
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	2 cut(s)	317, 1169
SmlI	CTYRAG	3 cut(s)	53, 326, 813
SmoI	CTYRAG	3 cut(s)	53, 326, 813
Sse9I	AATT	8 cut(s)	42, 350, 691, 713, 900, 915, 1155, 1221
SsiI	CCGC	1 cut(s)	522
SspI	AATATT	2 cut(s)	803, 1086
SspMI	CTAG	2 cut(s)	362, 1175
StyI	CCWWGG	1 cut(s)	768
TaaI	ACNGT	8 cut(s)	424, 637, 662, 956, 988, 1006, 1078, 1121
TaqI	TCGA	3 cut(s)	131, 536, 1143
TasI	AATT	8 cut(s)	42, 350, 691, 713, 900, 915, 1155, 1221
TatI	WGTACW	2 cut(s)	358, 835
TfiI	GAWTC	2 cut(s)	133, 1140
Tru1I	TTAA	6 cut(s)	252, 377, 824, 879, 1116, 1240
Tru9I	TTAA	6 cut(s)	252, 377, 824, 879, 1116, 1240
TscAI	CASTG	6 cut(s)	460, 853, 993, 1009, 1081, 1126
TseFI	GTSAC	2 cut(s)	817, 1072
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	2 cut(s)	817, 1072
TspDTI	ATGAA	2 cut(s)	713, 730
TspRI	CASTG	6 cut(s)	460, 853, 993, 1009, 1081, 1126
XapI	RAATTY	2 cut(s)	42, 350
XceI	RCATGY	1 cut(s)	671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	2 cut(s)	362, 1175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.