Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Reverse (-)

60881070 .. 60885184

Gene Structure 4115 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00380710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAGTTGGACTCCCTCAAAGTAGAGAAGATAGAGAGCCAAATTCAACCACTTGAACCAAACAAAGGCACCACCTTTTTCAGAACCTGTTTCAATGGACTCAACGCACTATCAGGTGTGGGAATACTATCAATTCCATTTGCTCTATCTCAGGGAGGGTGGTTGAGCTTAGTGCTTCTCTTCTCGGTAGCAATCCTATGTTGGTATACAGGGCTGCTTCTACAGCGATGTATGGACTCAAATCCGCACATAAAAACTTATCCCGACATTGGTCAAGTTGCTTTTGGACGCAAAGGAAGAGTGGCCATATCCATCTTTATGTATCTTGAGCTGTATTTAGTTGCAGTTGAATTTCTGATACTAGAAGTTTTTCCCACATTATGCAATTCCATGAAAGATAGAAGCCAATTCCCCAAGGTATTGCTTGTTTGCTTCATAACAAGCACCATCACCTATGGATCCATGGCCGTTTTGGGTTACTTGATGTTTGGAGAATATTTGAAGTCCCAAGTGACATTAAATCTTCCTGTACAAAAAATAAGTGCAAAAGTAGCAATTTTCATCACAGTAGTAAACCCCCTGACTAAGTATGCAATTATAATCACTCCAATTGCTACTGCTATAGAGGACTCATGCCATTTTTGCAACAGTCATGCAATTATCAGCATCGTGGTGAGGACGGGGATTGTGATCAGCACCGTATGTGTGGCATTGATGGTTCCATTTTTCGGCTATGTCATGGCACTCGTCGGTGCTTTTCTGAGTGTAACTGTCTCAATATTGTTGCCGTGCCTGTTCTACCTGAAGATTAACAATGTTGCTCGTAGGTTTGGGTTCGAGTTGATGACAATTGTTGGGATTATGGTGATGGGATCTTTTGTTGGCGTAGTGGGCACTTACACTTCTCTGAAAGAAATTGTAAACCATCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

310

Amino Acids

34.16

Weight (kDa)

8.68

Isoelectric Point (pI)

30.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aa_trans	PF01490	23 - 121	3.2e-20	Transmembrane amino acid transporter protein
Aa_trans	PF01490	123 - 300	6.3e-29	Transmembrane amino acid transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	206
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	3 cut(s)	453, 466, 880
AcoI	YGGCCR	2 cut(s)	303, 465
AcsI	RAATTY	2 cut(s)	42, 350
AcuI	CTGAAG	1 cut(s)	824
AfaI	GTAC	1 cut(s)	531
AfiI	CCNNNNNNNGG	3 cut(s)	65, 269, 728
AgsI	TTSAA	5 cut(s)	47, 56, 94, 350, 502
AluBI	AGCT	2 cut(s)	168, 331
AluI	AGCT	2 cut(s)	168, 331
Alw26I	GTCTC	1 cut(s)	778
AlwI	GGATC	3 cut(s)	453, 466, 880
AlwNI	CAGNNNCTG	1 cut(s)	87
AoxI	GGCC	2 cut(s)	303, 465
ApeKI	GCWGC	1 cut(s)	214
ApoI	RAATTY	2 cut(s)	42, 350
Asp700I	GAANNNNTTC	1 cut(s)	369
AsuHPI	GGTGA	3 cut(s)	442, 685, 877
BaeGI	GKGCMC	1 cut(s)	896
BalI	TGGCCA	1 cut(s)	305
BamHI	GGATCC	1 cut(s)	458
BanI	GGYRCC	1 cut(s)	68
BbvI	GCAGC	1 cut(s)	201
BccI	CCATC	4 cut(s)	320, 455, 709, 862
BceAI	ACGGC	2 cut(s)	452, 772
BclI	TGATCA	1 cut(s)	690
BcoDI	GTCTC	1 cut(s)	778
BfaI	CTAG	1 cut(s)	362
BfmI	CTRYAG	2 cut(s)	221, 621
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
BmiI	GGNNCC	3 cut(s)	70, 460, 720
BmsI	GCATC	1 cut(s)	675
BoxI	GACNNNNGTC	1 cut(s)	270
BplI	GAGNNNNNCTC	1 cut(s)	28
BpuEI	CTTGAG	1 cut(s)	347
BsaBI	GATNNNNATC	1 cut(s)	689
BsaJI	CCNNGG	2 cut(s)	414, 462
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 269, 728
Bse8I	GATNNNNATC	1 cut(s)	689
BseDI	CCNNGG	2 cut(s)	414, 462
BseJI	GATNNNNATC	1 cut(s)	689
BseLI	CCNNNNNNNGG	3 cut(s)	65, 269, 728
BseMII	CTCAG	2 cut(s)	164, 752
BseSI	GKGCMC	1 cut(s)	896
BseXI	GCAGC	1 cut(s)	201
BshFI	GGCC	2 cut(s)	305, 467
BshNI	GGYRCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	490
BslI	CCNNNNNNNGG	3 cut(s)	65, 269, 728
BsmAI	GTCTC	1 cut(s)	778
BsmFI	GGGAC	1 cut(s)	490
BsnI	GGCC	2 cut(s)	305, 467
Bsp1286I	GDGCHC	1 cut(s)	896
Bsp1407I	TGTACA	1 cut(s)	529
Bsp143I	GATC	3 cut(s)	458, 690, 872
Bsp19I	CCATGG	1 cut(s)	462
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	305, 467
BspCNI	CTCAG	2 cut(s)	163, 753
BspLI	GGNNCC	3 cut(s)	70, 460, 720
BspPI	GGATC	3 cut(s)	453, 466, 880
BspT107I	GGYRCC	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	529
BssECI	CCNNGG	2 cut(s)	414, 462
BssMI	GATC	3 cut(s)	458, 690, 872
BssNAI	GTATAC	1 cut(s)	207
BssT1I	CCWWGG	2 cut(s)	414, 462
Bst1107I	GTATAC	1 cut(s)	207
Bst4CI	ACNGT	4 cut(s)	568, 650, 700, 772
Bst6I	CTCTTC	2 cut(s)	185, 292
BstAUI	TGTACA	1 cut(s)	529
BstDEI	CTNAG	4 cut(s)	150, 169, 585, 761
BstDSI	CCRYGG	1 cut(s)	462
BstKTI	GATC	3 cut(s)	461, 693, 875
BstMAI	GTCTC	1 cut(s)	778
BstMBI	GATC	3 cut(s)	458, 690, 872
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 551, 642, 891
BstPAI	GACNNNNGTC	1 cut(s)	270
BstSFI	CTRYAG	2 cut(s)	221, 621
BstSLI	GKGCMC	1 cut(s)	896
BstV1I	GCAGC	1 cut(s)	201
BstX2I	RGATCY	2 cut(s)	458, 872
BstYI	RGATCY	2 cut(s)	458, 872
BstZ17I	GTATAC	1 cut(s)	207
BsuRI	GGCC	2 cut(s)	305, 467
BtgI	CCRYGG	1 cut(s)	462
BtgZI	GCGATG	1 cut(s)	241
CaiI	CAGNNNCTG	1 cut(s)	87
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	530
CviAII	CATG	5 cut(s)	391, 463, 633, 653, 739
CviJI	RGCY	8 cut(s)	39, 168, 214, 305, 331, 405, 467, 732
CviKI_1	RGCY	8 cut(s)	39, 168, 214, 305, 331, 405, 467, 732
CviQI	GTAC	1 cut(s)	530
DdeI	CTNAG	4 cut(s)	150, 169, 585, 761
DpnI	GATC	3 cut(s)	460, 692, 874
DpnII	GATC	3 cut(s)	458, 690, 872
EaeI	YGGCCR	2 cut(s)	303, 465
Eam1104I	CTCTTC	2 cut(s)	185, 292
EarI	CTCTTC	2 cut(s)	185, 292
Eco130I	CCWWGG	2 cut(s)	414, 462
Eco57I	CTGAAG	1 cut(s)	824
EcoT14I	CCWWGG	2 cut(s)	414, 462
ErhI	CCWWGG	2 cut(s)	414, 462
FaeI	CATG	5 cut(s)	394, 466, 636, 656, 742
FaqI	GGGAC	1 cut(s)	490
FatI	CATG	5 cut(s)	390, 462, 632, 652, 738
FbaI	TGATCA	1 cut(s)	690
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	362
GluI	GCNGC	1 cut(s)	215
HaeIII	GGCC	2 cut(s)	305, 467
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	5 cut(s)	394, 466, 636, 656, 742
HinfI	GANTC	4 cut(s)	11, 99, 236, 629
HphI	GGTGA	3 cut(s)	442, 685, 877
Hpy166II	GTNNAC	3 cut(s)	207, 574, 922
Hpy188I	TCNGA	4 cut(s)	83, 357, 762, 909
Hpy188III	TCNNGA	2 cut(s)	263, 326
Hpy8I	GTNNAC	3 cut(s)	207, 574, 922
Hpy99I	CGWCG	1 cut(s)	752
HpyCH4III	ACNGT	4 cut(s)	568, 650, 700, 772
HpyCH4V	TGCA	6 cut(s)	344, 384, 545, 593, 645, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 551, 642, 891
HpyF3I	CTNAG	4 cut(s)	150, 169, 585, 761
Hsp92II	CATG	5 cut(s)	394, 466, 636, 656, 742
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	3 cut(s)	458, 690, 872
LpnPI	CCDG	8 cut(s)	99, 100, 137, 195, 540, 593, 806, 815
Lsp1109I	GCAGC	1 cut(s)	201
LweI	GCATC	1 cut(s)	675
MaeI	CTAG	1 cut(s)	362
MaeIII	GTNAC	3 cut(s)	476, 511, 766
MalI	GATC	3 cut(s)	460, 692, 874
MboI	GATC	3 cut(s)	458, 690, 872
MboII	GAAGA	5 cut(s)	40, 172, 309, 515, 817
MfeI	CAATTG	2 cut(s)	609, 849
MflI	RGATCY	2 cut(s)	458, 872
MhlI	GDGCHC	1 cut(s)	896
MlsI	TGGCCA	1 cut(s)	305
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	4 cut(s)	5, 93, 230, 623
MnlI	CCTC	4 cut(s)	26, 149, 619, 669
Mox20I	TGGCCA	1 cut(s)	305
MroXI	GAANNNNTTC	1 cut(s)	369
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	2 cut(s)	518, 810
MslI	CAYNNNNRTG	2 cut(s)	317, 671
Msp20I	TGGCCA	1 cut(s)	305
MunI	CAATTG	2 cut(s)	609, 849
MwoI	GCNNNNNNNGC	4 cut(s)	223, 551, 642, 891
NcoI	CCATGG	1 cut(s)	462
NdeII	GATC	3 cut(s)	458, 690, 872
NlaIII	CATG	5 cut(s)	394, 466, 636, 656, 742
NlaIV	GGNNCC	3 cut(s)	70, 460, 720
NmuCI	GTSAC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	216
PleI	GAGTC	4 cut(s)	5, 93, 230, 623
PpsI	GAGTC	4 cut(s)	5, 93, 230, 623
PshAI	GACNNNNGTC	1 cut(s)	270
PsiI	TTATAA	1 cut(s)	599
PspN4I	GGNNCC	3 cut(s)	70, 460, 720
PstNI	CAGNNNCTG	1 cut(s)	87
PsuI	RGATCY	2 cut(s)	458, 872
RsaI	GTAC	1 cut(s)	531
RsaNI	GTAC	1 cut(s)	530
RseI	CAYNNNNRTG	2 cut(s)	317, 671
SaqAI	TTAA	2 cut(s)	518, 810
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	458, 690, 872
SchI	GAGTC	4 cut(s)	5, 93, 230, 623
SduI	GDGCHC	1 cut(s)	896
SetI	ASST	9 cut(s)	77, 89, 118, 170, 333, 420, 455, 804, 830
SfaNI	GCATC	1 cut(s)	675
SfcI	CTRYAG	2 cut(s)	221, 621
SmiMI	CAYNNNNRTG	2 cut(s)	317, 671
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
SsiI	CCGC	1 cut(s)	245
SspI	AATATT	2 cut(s)	497, 780
SspMI	CTAG	1 cut(s)	362
StyI	CCWWGG	2 cut(s)	414, 462
TaaI	ACNGT	4 cut(s)	568, 650, 700, 772
TaqI	TCGA	1 cut(s)	837
TatI	WGTACW	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	518, 810
Tru9I	TTAA	2 cut(s)	518, 810
TseFI	GTSAC	1 cut(s)	511
TseI	GCWGC	1 cut(s)	214
Tsp45I	GTSAC	1 cut(s)	511
TspDTI	ATGAA	3 cut(s)	407, 424, 550
XapI	RAATTY	2 cut(s)	42, 350
XcmI	CCANNNNNNNNNTGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	369
XspI	CTAG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.