Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Forward (+)

28087735 .. 28089347

Gene Structure 1613 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G275100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAGAGCCAAAACCAGCACCCACCCCAACCTCAGGAACCAAGCAAATTAGGCACCACCTTTTCCAGAACCTGTTTCAATGGACTTAATACATTATCAGGTGTTGGCATACTATCAATTCCTTTTGCACTTTCTGAAGGAGGGTGGCTGAGCTTAATACTTCTCTTTCTGTTGGCCCTCCTCTGTTGGTACACAGGGCTACTTCTACAAAGATGTATGGATGCAAATCTGCACATAAAAACTTACCCCGACATCGGAGATGTTGCTTTTGGACAGAAAGGAAGGATCACCATATCCATTTTCATGTACCTTGAGCTGTATTTTGTGGCAGTCGAGTTTCTAATATTAGAAGGTGACAATCTGAACAAGTTGTTCCCAAACATGGGTTTCAACATGGCAGGCATCAAAGTTGGAGGCAGACAGTGCTTTGTTCTGCTCACCGCGGTTGTGATTTTGCCAACAACATGGTTGAAGAATTTGGGACTCTTAGCTTATGTTTCTGCTGGAGGGGTTTTGGCTTCTGCTGTTTTGGTTGCTTGTGTTTTTTGGGTTGGTGCCGTAGATGGTGTCGGGTTTCATGAAGGAGGTGTTCTTCTGAATATGAGAGGCCTGCCTACTTGTATAAGCTTGTATCTGTTCTGCTATTGCGGCCATGCAGTTTTTCCCACACTCTGCAATTCCATGAAAGATAGAAGCCAATTCTCAAAGGTGTTACTTGTCTGCTTCATTACAAGCACCATCACCTATGGATCCATGGCTGTTTTGGGTTACTTGATGTTCGGACAACATTTGAAGTCTCAAATAACACTAAATCTTCCAATAAGAAAAATTAGCTCAAGAATAGCAATTTACATCACTATAATTAATCCCCTCACTAAGTATGCAATTGTAATCACCCCAATTGCTGCTGCCATTGAGGAAGCGCGCCCTATTCGCAACAGTCGTGTAATTAGTATCCTTGTTAGAACACTAATTGTGATCAGCACTGTAATTGTGGCATTGATGGTTCCATTTTTCAACTACGTAATGGCCTTTGTTGGTTCATTTCTGGGCGTCACCGTGTCGGTCTTGTTGCCGTGCTTGCTCTACCTTAAGATCAACGTTGCTGCTCGGAGATTTGGGTTGGAGTTGGTGACGATTATTGGAATTTTGGTGATAGGGTCTTTGGTTGGCGTAGTGGGTACGTACACTTCTGTTAAAGAAATTGTAAACCGAATTCTGGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

409

Amino Acids

44.54

Weight (kDa)

9.09

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	53, 554
AccII	CGCG	2 cut(s)	443, 925
AciI	CCGC	3 cut(s)	441, 443, 648
AclI	AACGTT	1 cut(s)	1101
AclWI	GGATC	3 cut(s)	293, 744, 757
AcoI	YGGCCR	1 cut(s)	649
AcsI	RAATTY	3 cut(s)	475, 1146, 1215
AcuI	CTGAAG	1 cut(s)	156
AcyI	GRCGYC	1 cut(s)	1053
AfaI	GTAC	4 cut(s)	191, 308, 1183, 1187
AfiI	CCNNNNNNNGG	5 cut(s)	34, 254, 382, 383, 1219
AflII	CTTAAG	1 cut(s)	1091
AgsI	TTSAA	5 cut(s)	79, 391, 472, 793, 1018
AluBI	AGCT	5 cut(s)	153, 316, 491, 627, 834
AluI	AGCT	5 cut(s)	153, 316, 491, 627, 834
Alw26I	GTCTC	1 cut(s)	801
AlwI	GGATC	3 cut(s)	293, 744, 757
AlwNI	CAGNNNCTG	1 cut(s)	72
AoxI	GGCC	4 cut(s)	174, 607, 649, 1029
ApeKI	GCWGC	3 cut(s)	905, 908, 1106
ApoI	RAATTY	3 cut(s)	475, 1146, 1215
AseI	ATTAAT	1 cut(s)	864
AspLEI	GCGC	2 cut(s)	925, 927
AspS9I	GGNCC	1 cut(s)	175
AsuHPI	GGTGA	8 cut(s)	280, 365, 430, 733, 886, 1048, 1144, 1165
AxyI	CCTNAGG	1 cut(s)	33
BamHI	GGATCC	1 cut(s)	749
BanI	GGYRCC	2 cut(s)	53, 554
BarI	GAAGNNNNNNTAC	2 cut(s)	1174, 1206
BbvI	GCAGC	3 cut(s)	892, 895, 1093
BccI	CCATC	3 cut(s)	557, 746, 997
BceAI	ACGGC	2 cut(s)	542, 1060
BciVI	GTATCC	1 cut(s)	965
BclI	TGATCA	1 cut(s)	978
BcoDI	GTCTC	1 cut(s)	801
BfrI	CTTAAG	1 cut(s)	1091
BfuI	GTATCC	1 cut(s)	965
BisI	GCNGC	4 cut(s)	649, 906, 909, 1107
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	4 cut(s)	650, 907, 910, 1108
BmgT120I	GGNCC	1 cut(s)	175
BmiI	GGNNCC	5 cut(s)	39, 55, 556, 751, 1008
BmsI	GCATC	2 cut(s)	211, 411
BpmI	CTGGAG	1 cut(s)	525
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	2 cut(s)	332, 820
BsaAI	YACGTR	2 cut(s)	1024, 1185
BsaBI	GATNNNNATC	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	1053
BsaJI	CCNNGG	2 cut(s)	441, 753
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 254, 382, 383, 1219
Bse21I	CCTNAGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	441, 753
BseGI	GGATG	1 cut(s)	226
BseJI	GATNNNNATC	1 cut(s)	225
BseLI	CCNNNNNNNGG	5 cut(s)	34, 254, 382, 383, 1219
BseMII	CTCAG	2 cut(s)	47, 140
BsePI	GCGCGC	1 cut(s)	923
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	3 cut(s)	892, 895, 1093
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	2 cut(s)	443, 925
BshFI	GGCC	4 cut(s)	176, 609, 651, 1031
BshNI	GGYRCC	2 cut(s)	53, 554
BslFI	GGGAC	1 cut(s)	495
BslI	CCNNNNNNNGG	5 cut(s)	34, 254, 382, 383, 1219
BsmAI	GTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	495
BsnI	GGCC	4 cut(s)	176, 609, 651, 1031
Bsp143I	GATC	4 cut(s)	285, 749, 978, 1095
Bsp1720I	GCTNAGC	1 cut(s)	149
Bsp19I	CCATGG	1 cut(s)	753
BspACI	CCGC	3 cut(s)	441, 443, 648
BspANI	GGCC	4 cut(s)	176, 609, 651, 1031
BspCNI	CTCAG	2 cut(s)	46, 141
BspFNI	CGCG	2 cut(s)	443, 925
BspHI	TCATGA	1 cut(s)	577
BspLI	GGNNCC	5 cut(s)	39, 55, 556, 751, 1008
BspPI	GGATC	3 cut(s)	293, 744, 757
BspT107I	GGYRCC	2 cut(s)	53, 554
BspTI	CTTAAG	1 cut(s)	1091
BssECI	CCNNGG	2 cut(s)	441, 753
BssHII	GCGCGC	1 cut(s)	923
BssMI	GATC	4 cut(s)	285, 749, 978, 1095
BssNI	GRCGYC	1 cut(s)	1053
BssT1I	CCWWGG	1 cut(s)	753
Bst4CI	ACNGT	4 cut(s)	423, 941, 988, 1060
BstACI	GRCGYC	1 cut(s)	1053
BstAFI	CTTAAG	1 cut(s)	1091
BstAPI	GCANNNNNTGC	1 cut(s)	423
BstBAI	YACGTR	2 cut(s)	1024, 1185
BstC8I	GCNNGC	4 cut(s)	400, 611, 925, 1082
BstDEI	CTNAG	4 cut(s)	33, 149, 487, 876
BstDSI	CCRYGG	2 cut(s)	441, 753
BstF5I	GGATG	1 cut(s)	226
BstFNI	CGCG	2 cut(s)	443, 925
BstHHI	GCGC	2 cut(s)	925, 927
BstKTI	GATC	4 cut(s)	288, 752, 981, 1098
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	4 cut(s)	285, 749, 978, 1095
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 423, 648, 933, 1081
BstSNI	TACGTA	2 cut(s)	1024, 1185
BstUI	CGCG	2 cut(s)	443, 925
BstV1I	GCAGC	3 cut(s)	892, 895, 1093
BstX2I	RGATCY	1 cut(s)	749
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	749
Bsu36I	CCTNAGG	1 cut(s)	33
BsuI	GTATCC	1 cut(s)	965
BsuRI	GGCC	4 cut(s)	176, 609, 651, 1031
BtgI	CCRYGG	2 cut(s)	441, 753
BtsCI	GGATG	1 cut(s)	226
BtsIMutI	CAGTG	2 cut(s)	428, 984
Cac8I	GCNNGC	4 cut(s)	400, 611, 925, 1082
CaiI	CAGNNNCTG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	577
CfoI	GCGC	2 cut(s)	925, 927
Cfr13I	GGNCC	1 cut(s)	175
Cfr42I	CCGCGG	1 cut(s)	444
CseI	GACGC	1 cut(s)	1042
Csp6I	GTAC	4 cut(s)	190, 307, 1182, 1186
CviAII	CATG	8 cut(s)	304, 382, 394, 465, 578, 653, 682, 754
CviQI	GTAC	4 cut(s)	190, 307, 1182, 1186
DdeI	CTNAG	4 cut(s)	33, 149, 487, 876
DpnI	GATC	4 cut(s)	287, 751, 980, 1097
DpnII	GATC	4 cut(s)	285, 749, 978, 1095
EaeI	YGGCCR	1 cut(s)	649
Eco105I	TACGTA	2 cut(s)	1024, 1185
Eco130I	CCWWGG	1 cut(s)	753
Eco147I	AGGCCT	1 cut(s)	609
Eco57I	CTGAAG	1 cut(s)	156
Eco81I	CCTNAGG	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	1215
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
FaeI	CATG	8 cut(s)	307, 385, 397, 468, 581, 656, 685, 757
FaqI	GGGAC	1 cut(s)	495
FatI	CATG	8 cut(s)	303, 381, 393, 464, 577, 652, 681, 753
FbaI	TGATCA	1 cut(s)	978
Fnu4HI	GCNGC	4 cut(s)	649, 906, 909, 1107
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	649, 906, 909, 1107
GlaI	GCGC	2 cut(s)	924, 926
GluI	GCNGC	4 cut(s)	649, 906, 909, 1107
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	176, 609, 651, 1031
HgaI	GACGC	1 cut(s)	1042
HhaI	GCGC	2 cut(s)	925, 927
Hin1I	GRCGYC	1 cut(s)	1053
Hin1II	CATG	8 cut(s)	307, 385, 397, 468, 581, 656, 685, 757
Hin6I	GCGC	2 cut(s)	923, 925
HinP1I	GCGC	2 cut(s)	923, 925
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	1 cut(s)	483
HphI	GGTGA	8 cut(s)	280, 365, 430, 733, 886, 1048, 1144, 1165
Hpy166II	GTNNAC	3 cut(s)	192, 1188, 1210
Hpy188I	TCNGA	6 cut(s)	136, 257, 363, 597, 782, 1113
Hpy188III	TCNNGA	5 cut(s)	35, 66, 578, 837, 1220
Hpy8I	GTNNAC	3 cut(s)	192, 1188, 1210
HpyAV	CCTTC	4 cut(s)	131, 276, 344, 575
HpyCH4III	ACNGT	4 cut(s)	423, 941, 988, 1060
HpyCH4IV	ACGT	3 cut(s)	1023, 1101, 1184
HpyCH4V	TGCA	6 cut(s)	128, 224, 232, 656, 675, 884
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 423, 648, 933, 1081
HpyF3I	CTNAG	4 cut(s)	33, 149, 487, 876
HpySE526I	ACGT	3 cut(s)	1023, 1101, 1184
Hsp92I	GRCGYC	1 cut(s)	1053
Hsp92II	CATG	8 cut(s)	307, 385, 397, 468, 581, 656, 685, 757
HspAI	GCGC	2 cut(s)	923, 925
Ksp22I	TGATCA	1 cut(s)	978
KspI	CCGCGG	1 cut(s)	444
Kzo9I	GATC	4 cut(s)	285, 749, 978, 1095
Lsp1109I	GCAGC	3 cut(s)	892, 895, 1093
LweI	GCATC	2 cut(s)	211, 411
MaeII	ACGT	3 cut(s)	1023, 1101, 1184
MaeIII	GTNAC	5 cut(s)	353, 711, 767, 1054, 1132
MalI	GATC	4 cut(s)	287, 751, 980, 1097
MboI	GATC	4 cut(s)	285, 749, 978, 1095
MboII	GAAGA	3 cut(s)	484, 584, 806
MfeI	CAATTG	2 cut(s)	885, 900
MflI	RGATCY	1 cut(s)	749
MlyI	GAGTC	1 cut(s)	477
MmeI	TCCRAC	2 cut(s)	391, 1104
MseI	TTAA	6 cut(s)	87, 155, 864, 1092, 1197, 1225
MslI	CAYNNNNRTG	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	443
MspCI	CTTAAG	1 cut(s)	1091
MunI	CAATTG	2 cut(s)	885, 900
MvnI	CGCG	2 cut(s)	443, 925
MwoI	GCNNNNNNNGC	5 cut(s)	51, 423, 648, 933, 1081
NcoI	CCATGG	1 cut(s)	753
NdeII	GATC	4 cut(s)	285, 749, 978, 1095
NlaIII	CATG	8 cut(s)	307, 385, 397, 468, 581, 656, 685, 757
NlaIV	GGNNCC	5 cut(s)	39, 55, 556, 751, 1008
NmuCI	GTSAC	3 cut(s)	353, 1054, 1132
PagI	TCATGA	1 cut(s)	577
PauI	GCGCGC	1 cut(s)	923
PceI	AGGCCT	1 cut(s)	609
PcsI	WCGNNNNNNNCGW	1 cut(s)	940
PkrI	GCNGC	4 cut(s)	650, 907, 910, 1108
PleI	GAGTC	1 cut(s)	477
PpsI	GAGTC	1 cut(s)	477
Ppu21I	YACGTR	2 cut(s)	1024, 1185
PshBI	ATTAAT	1 cut(s)	864
Psp1406I	AACGTT	1 cut(s)	1101
PspN4I	GGNNCC	5 cut(s)	39, 55, 556, 751, 1008
PspPI	GGNCC	1 cut(s)	175
PstNI	CAGNNNCTG	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	749
PteI	GCGCGC	1 cut(s)	923
RsaI	GTAC	4 cut(s)	191, 308, 1183, 1187
RsaNI	GTAC	4 cut(s)	190, 307, 1182, 1186
RseI	CAYNNNNRTG	1 cut(s)	302
SacII	CCGCGG	1 cut(s)	444
SaqAI	TTAA	6 cut(s)	87, 155, 864, 1092, 1197, 1225
SatI	GCNGC	4 cut(s)	649, 906, 909, 1107
Sau3AI	GATC	4 cut(s)	285, 749, 978, 1095
Sau96I	GGNCC	1 cut(s)	175
SchI	GAGTC	1 cut(s)	477
SfaNI	GCATC	2 cut(s)	211, 411
Sfr303I	CCGCGG	1 cut(s)	444
SgrBI	CCGCGG	1 cut(s)	444
SmiMI	CAYNNNNRTG	1 cut(s)	302
SmlI	CTYRAG	3 cut(s)	311, 835, 1091
SmoI	CTYRAG	3 cut(s)	311, 835, 1091
SnaBI	TACGTA	2 cut(s)	1024, 1185
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	3 cut(s)	441, 443, 648
SspI	AATATT	1 cut(s)	345
StuI	AGGCCT	1 cut(s)	609
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	4 cut(s)	423, 941, 988, 1060
TaiI	ACGT	3 cut(s)	1026, 1104, 1187
TaqI	TCGA	1 cut(s)	333
TaqII	GACCGA	1 cut(s)	1054
TauI	GCSGC	1 cut(s)	651
Tru1I	TTAA	6 cut(s)	87, 155, 864, 1092, 1197, 1225
Tru9I	TTAA	6 cut(s)	87, 155, 864, 1092, 1197, 1225
TscAI	CASTG	2 cut(s)	428, 991
TseFI	GTSAC	3 cut(s)	353, 1054, 1132
TseI	GCWGC	3 cut(s)	905, 908, 1106
Tsp45I	GTSAC	3 cut(s)	353, 1054, 1132
TspDTI	ATGAA	6 cut(s)	292, 566, 594, 698, 715, 1032
TspRI	CASTG	2 cut(s)	428, 991
Vha464I	CTTAAG	1 cut(s)	1091
VspI	ATTAAT	1 cut(s)	864
XapI	RAATTY	3 cut(s)	475, 1146, 1215
XcmI	CCANNNNNNNNNTGG	1 cut(s)	760

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.