Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009601

Physical Location & Seq

Genomic Coordinates Reverse (-)

4171044 .. 4172774

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06440.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGGACAGCCTTAAAGCAGAGAAAATTGAGAGCCAAAACCTACCCTCACAGGAATCAACCAAAGGTGGAGGCACCTCATTTTTCAGAACATGTTTTAATGGTCTCAACACGTTATCAGGAGTTGGGATTCTATCGATTCCAATTGCACTTTCTGAAGGAGGGTGGTTGAGCTTAATCCTTCTTTTCCTGTTGGCACTTCTTTGTTGGTATACCGGGTTGCTTCTACAACGATGCATGGACGGGAATCCGCGGATCAAGAGTTATCCCAACATTGGAGAAGCTGCTTATGGACAGAAAGGAAGAGTCGCCATCTCCATTTTTATGTACCTTGAGCTGTATTTGGTAGCTGTTGAGTTTCTAATATTAGAAGGTGACAACTTAAACCAGTTGTTCCCAAGCATGGGTTTTAACATGGCAGGCCTCAAAGTCGGAGGCAAACAATGCTTTGTTTTGCTCACTGCCCTTGTAATTCTGCCAACGACATGGCTGAAGAGTCTAAGATTGTTGGCTTATGTTTCCGCCGGAGGAGTTTTCGCTTCTCTTCTTTTGGTTGCCTGCGTGTTTTGGGTTGGTGCGGTTGATGGTGTAGGGTTTCATGAAGGAGATGTTCTTCTTAATTTGAGAGGATTGCCTACTGCTGTGAGCTTGTATCTGTTCTGCTATTGTGGCCATGCAGTTTTTCCCACATTGTGCAATTCCATGAAGGACAGGAGCAAATTCTCCAAGGTATTACTTATCTGCTTCGTTGCAAGCACCATCACCTACGGATCAATGGCGGTTTTAGGTTACTTGATGTTCGGACAAGAATTGAAGTCTCAAGTCACATTAAATCTTCCAGTACGAAAAATTAGTTCAAGGATAGCAATTTACATTACTATAATTAATCCCCTCACAAAGTATGCAATTATAATCACTCCGATTGCTGCTGCTATTGAGGATACACGCCCTTTTCGCAACAGTCGCACAATTAGCATCTTCGTGCGAACCTTAATTGTAATTAGCACCGTAATTGTGGCCTTGGCCATTCCGTTTTTTAGCTACTTAATGGCTTTAATCGGCGCATCTCTGAACGTGATGGTCTCAGTCTTGCTGCCGTGCTTGTTCTACCTCAAGATTAACGTTGCTGCTAGGAGATTCGGGTTCGAGTTGGCGGTAATTGTTGCGATTATGGTAATAGGGTCTTTTGTTGGGGTAGTTGGTACGTACACTTCTGTGAAACAAATTGTAAGACAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04721 ko04723 ko04727 ko05032 ko05033 map04721 map04723 map04727 map05032 map05033

Pfam Domains

Protein Families

Aa_trans

Protein Analysis

413

Amino Acids

44.94

Weight (kDa)

9.31

Isoelectric Point (pI)

30.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009601)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15240 AT5G15240 AT5G15240
fragaria_vesca	FvH4_4g31320
malus_domestica	MD13G1071800.v1.1 MD13G1071900.v1.1 MD16G1072500.v1.1
prunus_persica	Prupe.1G275100_v2.0.a1
pyrus_communis	pycom13g06440 pycom16g06280
rosa_chinensis	RchiOBHm_Chr4g0439811
rosa_laevigata	RLG00000006237
rosa_multiflora	Rmu_co8493243.1_g000001 Rmu_ssc0000029.1_g000004
rosa_roxburghii	Rroxscaffold_5G00380710
rosa_rugosa	Rorug04G0321500 Rorug05G0306500 Rorug05G0306600
rosa_samantha	Rh4BG384800 Rh4CG399200 Rh4DG379000
rosa_wichuraiana	Rw4G031830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	908
AccB1I	GGYRCC	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	209
AccII	CGCG	1 cut(s)	250
AciI	CCGC	6 cut(s)	248, 250, 519, 575, 776, 1151
AclI	AACGTT	1 cut(s)	1119
AclWI	GGATC	2 cut(s)	260, 775
AcoI	YGGCCR	2 cut(s)	667, 1020
AcsI	RAATTY	1 cut(s)	716
AcuI	CTGAAG	2 cut(s)	174, 509
AdeI	CACNNNGTG	1 cut(s)	690
AfaI	GTAC	4 cut(s)	326, 840, 1201, 1205
AfiI	CCNNNNNNNGG	3 cut(s)	272, 400, 401
AflIII	ACRYGT	2 cut(s)	89, 108
AgsI	TTSAA	2 cut(s)	811, 855
AjuI	GAANNNNNNNTTGG	2 cut(s)	133, 165
AleI	CACNNNNGTG	1 cut(s)	1211
AluBI	AGCT	6 cut(s)	171, 281, 334, 347, 645, 1038
AluI	AGCT	6 cut(s)	171, 281, 334, 347, 645, 1038
Alw26I	GTCTC	3 cut(s)	107, 819, 1084
AlwI	GGATC	2 cut(s)	260, 775
AoxI	GGCC	4 cut(s)	418, 667, 1014, 1020
ApeKI	GCWGC	5 cut(s)	281, 923, 926, 1090, 1124
ApoI	RAATTY	1 cut(s)	716
AseI	ATTAAT	1 cut(s)	882
AspLEI	GCGC	1 cut(s)	1061
AsuC2I	CCSGG	1 cut(s)	214
AsuHPI	GGTGA	2 cut(s)	383, 751
BalI	TGGCCA	2 cut(s)	669, 1022
BanI	GGYRCC	1 cut(s)	71
BarI	GAAGNNNNNNTAC	2 cut(s)	1192, 1224
BbvI	GCAGC	5 cut(s)	268, 910, 913, 1077, 1111
BccI	CCATC	4 cut(s)	317, 575, 764, 1069
BceAI	ACGGC	1 cut(s)	1078
BciVI	GTATCC	1 cut(s)	931
BcnI	CCSGG	1 cut(s)	214
BcoDI	GTCTC	3 cut(s)	107, 819, 1084
BfaI	CTAG	1 cut(s)	1128
BfuI	GTATCC	1 cut(s)	931
BisI	GCNGC	5 cut(s)	282, 924, 927, 1091, 1125
BlsI	GCNGC	5 cut(s)	283, 925, 928, 1092, 1126
Bme1390I	CCNGG	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	214
BmsI	GCATC	3 cut(s)	221, 981, 1070
BpuEI	CTTGAG	3 cut(s)	350, 801, 1094
BpuMI	CCSGG	1 cut(s)	214
Bsa29I	ATCGAT	1 cut(s)	134
BsaAI	YACGTR	1 cut(s)	1203
BsaI	GGTCTC	2 cut(s)	107, 1084
BsaJI	CCNNGG	3 cut(s)	248, 723, 1017
Bsc4I	CCNNNNNNNGG	3 cut(s)	272, 400, 401
Bse1I	ACTGG	2 cut(s)	385, 836
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	248, 723, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	272, 400, 401
BseMII	CTCAG	1 cut(s)	1095
BseNI	ACTGG	2 cut(s)	385, 836
BseRI	GAGGAG	1 cut(s)	540
BseXI	GCAGC	5 cut(s)	268, 910, 913, 1077, 1111
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	4 cut(s)	420, 669, 1016, 1022
BshNI	GGYRCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	213, 522
BslI	CCNNNNNNNGG	3 cut(s)	272, 400, 401
BsmAI	GTCTC	3 cut(s)	107, 819, 1084
BsnI	GGCC	4 cut(s)	420, 669, 1016, 1022
Bso31I	GGTCTC	2 cut(s)	107, 1084
Bsp143I	GATC	2 cut(s)	252, 767
BspACI	CCGC	6 cut(s)	248, 250, 519, 575, 776, 1151
BspANI	GGCC	4 cut(s)	420, 669, 1016, 1022
BspCNI	CTCAG	1 cut(s)	1094
BspDI	ATCGAT	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	250
BspHI	TCATGA	1 cut(s)	595
BspLI	GGNNCC	1 cut(s)	73
BspPI	GGATC	2 cut(s)	260, 775
BspT107I	GGYRCC	1 cut(s)	71
BspTNI	GGTCTC	2 cut(s)	107, 1084
BsrI	ACTGG	2 cut(s)	385, 836
BssECI	CCNNGG	3 cut(s)	248, 723, 1017
BssMI	GATC	2 cut(s)	252, 767
BssNAI	GTATAC	1 cut(s)	210
BssT1I	CCWWGG	2 cut(s)	723, 1017
Bst1107I	GTATAC	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	959, 1006
Bst6I	CTCTTC	3 cut(s)	295, 485, 546
BstAPI	GCANNNNNTGC	1 cut(s)	441
BstBAI	YACGTR	1 cut(s)	1203
BstC8I	GCNNGC	3 cut(s)	418, 556, 751
BstDEI	CTNAG	2 cut(s)	497, 1081
BstDSI	CCRYGG	1 cut(s)	248
BstFNI	CGCG	1 cut(s)	250
BstHHI	GCGC	1 cut(s)	1061
BstKTI	GATC	2 cut(s)	255, 770
BstMAI	GTCTC	3 cut(s)	107, 819, 1084
BstMBI	GATC	2 cut(s)	252, 767
BstMWI	GCNNNNNNNGC	5 cut(s)	441, 666, 951, 960, 969
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	212
BstSNI	TACGTA	1 cut(s)	1203
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	5 cut(s)	268, 910, 913, 1077, 1111
BstXI	CCANNNNNNTGG	1 cut(s)	483
BstZ17I	GTATAC	1 cut(s)	210
Bsu15I	ATCGAT	1 cut(s)	134
BsuI	GTATCC	1 cut(s)	931
BsuRI	GGCC	4 cut(s)	420, 669, 1016, 1022
BsuTUI	ATCGAT	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	3 cut(s)	418, 556, 751
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	1 cut(s)	1061
Cfr42I	CCGCGG	1 cut(s)	251
ClaI	ATCGAT	1 cut(s)	134
Csp6I	GTAC	4 cut(s)	325, 839, 1200, 1204
CviAII	CATG	8 cut(s)	90, 235, 400, 412, 483, 596, 671, 700
CviQI	GTAC	4 cut(s)	325, 839, 1200, 1204
DdeI	CTNAG	2 cut(s)	497, 1081
DpnI	GATC	2 cut(s)	254, 769
DpnII	GATC	2 cut(s)	252, 767
DraIII	CACNNNGTG	1 cut(s)	690
EaeI	YGGCCR	2 cut(s)	667, 1020
Eam1104I	CTCTTC	3 cut(s)	295, 485, 546
EarI	CTCTTC	3 cut(s)	295, 485, 546
EciI	GGCGGA	1 cut(s)	508
Eco105I	TACGTA	1 cut(s)	1203
Eco130I	CCWWGG	2 cut(s)	723, 1017
Eco147I	AGGCCT	1 cut(s)	420
Eco31I	GGTCTC	2 cut(s)	107, 1084
Eco57I	CTGAAG	2 cut(s)	174, 509
EcoT14I	CCWWGG	2 cut(s)	723, 1017
EcoT22I	ATGCAT	1 cut(s)	236
ErhI	CCWWGG	2 cut(s)	723, 1017
FaeI	CATG	8 cut(s)	93, 238, 403, 415, 486, 599, 674, 703
FatI	CATG	8 cut(s)	89, 234, 399, 411, 482, 595, 670, 699
FblI	GTMKAC	1 cut(s)	209
Fnu4HI	GCNGC	5 cut(s)	282, 924, 927, 1091, 1125
Fsp4HI	GCNGC	5 cut(s)	282, 924, 927, 1091, 1125
FspBI	CTAG	1 cut(s)	1128
GlaI	GCGC	1 cut(s)	1060
GluI	GCNGC	5 cut(s)	282, 924, 927, 1091, 1125
HaeIII	GGCC	4 cut(s)	420, 669, 1016, 1022
HapII	CCGG	2 cut(s)	213, 522
HhaI	GCGC	1 cut(s)	1061
Hin1II	CATG	8 cut(s)	93, 238, 403, 415, 486, 599, 674, 703
Hin6I	GCGC	1 cut(s)	1059
HinP1I	GCGC	1 cut(s)	1059
HinfI	GANTC	7 cut(s)	53, 127, 136, 244, 303, 493, 1134
HpaII	CCGG	2 cut(s)	213, 522
HphI	GGTGA	2 cut(s)	383, 751
Hpy166II	GTNNAC	2 cut(s)	210, 1206
Hpy188I	TCNGA	7 cut(s)	86, 154, 431, 800, 918, 1068, 1238
Hpy188III	TCNNGA	4 cut(s)	117, 256, 596, 1111
Hpy8I	GTNNAC	2 cut(s)	210, 1206
HpyAV	CCTTC	5 cut(s)	149, 188, 362, 593, 697
HpyCH4III	ACNGT	2 cut(s)	959, 1006
HpyCH4IV	ACGT	4 cut(s)	110, 1071, 1119, 1202
HpyCH4V	TGCA	6 cut(s)	146, 234, 674, 693, 749, 902
HpyF10VI	GCNNNNNNNGC	5 cut(s)	441, 666, 951, 960, 969
HpyF3I	CTNAG	2 cut(s)	497, 1081
HpySE526I	ACGT	4 cut(s)	110, 1071, 1119, 1202
Hsp92II	CATG	8 cut(s)	93, 238, 403, 415, 486, 599, 674, 703
HspAI	GCGC	1 cut(s)	1059
KspI	CCGCGG	1 cut(s)	251
Kzo9I	GATC	2 cut(s)	252, 767
LmnI	GCTCC	1 cut(s)	711
Lsp1109I	GCAGC	5 cut(s)	268, 910, 913, 1077, 1111
LweI	GCATC	3 cut(s)	221, 981, 1070
MaeI	CTAG	1 cut(s)	1128
MaeII	ACGT	4 cut(s)	110, 1071, 1119, 1202
MaeIII	GTNAC	3 cut(s)	371, 785, 820
MalI	GATC	2 cut(s)	254, 769
MboI	GATC	2 cut(s)	252, 767
MboII	GAAGA	6 cut(s)	312, 502, 533, 602, 824, 967
MfeI	CAATTG	1 cut(s)	141
MlsI	TGGCCA	2 cut(s)	669, 1022
MluNI	TGGCCA	2 cut(s)	669, 1022
MlyI	GAGTC	2 cut(s)	312, 502
MmeI	TCCRAC	1 cut(s)	409
Mox20I	TGGCCA	2 cut(s)	669, 1022
Mph1103I	ATGCAT	1 cut(s)	236
MscI	TGGCCA	2 cut(s)	669, 1022
MslI	CAYNNNNRTG	3 cut(s)	320, 977, 1211
Msp20I	TGGCCA	2 cut(s)	669, 1022
MspA1I	CMGCKG	1 cut(s)	250
MspI	CCGG	2 cut(s)	213, 522
MspR9I	CCNGG	1 cut(s)	214
MunI	CAATTG	1 cut(s)	141
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	5 cut(s)	441, 666, 951, 960, 969
NciI	CCSGG	1 cut(s)	214
NdeII	GATC	2 cut(s)	252, 767
NlaIII	CATG	8 cut(s)	93, 238, 403, 415, 486, 599, 674, 703
NlaIV	GGNNCC	1 cut(s)	73
NmuCI	GTSAC	2 cut(s)	371, 820
NsiI	ATGCAT	1 cut(s)	236
NspI	RCATGY	1 cut(s)	93
OliI	CACNNNNGTG	1 cut(s)	1211
PagI	TCATGA	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	420
PciI	ACATGT	1 cut(s)	89
PfeI	GAWTC	5 cut(s)	53, 127, 136, 244, 1134
PkrI	GCNGC	5 cut(s)	283, 925, 928, 1092, 1126
PleI	GAGTC	2 cut(s)	311, 501
PpsI	GAGTC	2 cut(s)	311, 501
Ppu21I	YACGTR	1 cut(s)	1203
PscI	ACATGT	1 cut(s)	89
PshBI	ATTAAT	1 cut(s)	882
PsiI	TTATAA	1 cut(s)	908
Psp1406I	AACGTT	1 cut(s)	1119
PspN4I	GGNNCC	1 cut(s)	73
RsaI	GTAC	4 cut(s)	326, 840, 1201, 1205
RsaNI	GTAC	4 cut(s)	325, 839, 1200, 1204
RseI	CAYNNNNRTG	3 cut(s)	320, 977, 1211
SacII	CCGCGG	1 cut(s)	251
SatI	GCNGC	5 cut(s)	282, 924, 927, 1091, 1125
Sau3AI	GATC	2 cut(s)	252, 767
SchI	GAGTC	2 cut(s)	312, 502
ScrFI	CCNGG	1 cut(s)	214
SfaNI	GCATC	3 cut(s)	221, 981, 1070
Sfr303I	CCGCGG	1 cut(s)	251
SgrBI	CCGCGG	1 cut(s)	251
SmiMI	CAYNNNNRTG	3 cut(s)	320, 977, 1211
SmlI	CTYRAG	3 cut(s)	329, 816, 1109
SmoI	CTYRAG	3 cut(s)	329, 816, 1109
SnaBI	TACGTA	1 cut(s)	1203
SseBI	AGGCCT	1 cut(s)	420
SsiI	CCGC	6 cut(s)	248, 250, 519, 575, 776, 1151
SspI	AATATT	1 cut(s)	363
SspMI	CTAG	1 cut(s)	1128
StuI	AGGCCT	1 cut(s)	420
StyD4I	CCNGG	1 cut(s)	212
StyI	CCWWGG	2 cut(s)	723, 1017
TaaI	ACNGT	2 cut(s)	959, 1006
TaiI	ACGT	4 cut(s)	113, 1074, 1122, 1205
TaqI	TCGA	2 cut(s)	134, 1143
TfiI	GAWTC	5 cut(s)	53, 127, 136, 244, 1134
TscAI	CASTG	1 cut(s)	463
TseFI	GTSAC	2 cut(s)	371, 820
TseI	GCWGC	5 cut(s)	281, 923, 926, 1090, 1124
Tsp45I	GTSAC	2 cut(s)	371, 820
TspDTI	ATGAA	3 cut(s)	584, 612, 716
TspGWI	ACGGA	2 cut(s)	780, 1017
TspRI	CASTG	1 cut(s)	463
VspI	ATTAAT	1 cut(s)	882
XapI	RAATTY	1 cut(s)	716
XceI	RCATGY	1 cut(s)	93
XmiI	GTMKAC	1 cut(s)	209
XspI	CTAG	1 cut(s)	1128
Zsp2I	ATGCAT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.