Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005431

Physical Location & Seq

Genomic Coordinates Forward (+)

5454654 .. 5459647

Gene Structure 4994 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G16630.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

ATGAAGTCTAGAAGTGAAAGTAAGAATTGTAGGCTTGCACAAGCCTCTAGAGTAGCAGTCAACAAAGTTCTAGACAAAAGCAGCGCCCGTGGCTCTCGAGGCAAGAAGAAGCAAGATGATAACTGTGATTCCGCTAAGCGGGATAAAGGCGTAAACGGTAAGGGAAAGCAAGCGCTCGACGCAAGATTGATTGATAACGTTCTAGAGGACAGGGGATGTGGTAATGTTGATGATGATGAAATGAATGATTCAGACTGGGAAGACTGTCCAATCCCTAGTCTTGATAGTACGGTTGATGATAATAATGTTGATGACACCAGAGAGCTAACCATAGAATTTGATGATGATGTTCCTGATGCTAAGAAGCAGAAGAATGCATACCGTGCAACAGCAGAAGACAAGGTACGGGCGGAACTTGTCCATAAGGTGCACTTGCTCTGTCTGCTTGCAAGAGGGAGGATAGTTGACAGTGCTTGTAATGATCCCTTGATTCAGGCTGCCTTGCTTTCACTTCTACCATCATACTTGACAAAAGTATCAAATCTCGAGAAAGTTACTGTCAAGGATATAGCCCCTCTTCTTCGTTGGGTTCGTGAAAACTTTTCTGTTAGTTGTTCTCCCAGTTCTGAGAAATCTTTTCGTACATCCCTAGCATTTGCTCTTGAATCTCGTAAAGGCACAGCGGAAGAGCTTGCAGCACTGGCTGTTGCTTTGCTTAGAGCATTAAAGCTCACAACCCGGTTTGTGTCTATTCTTGATGTTGCATCCTTAAAACCTGGGGCCGATAGGAATGAATCATCAGGTCAAAACAGAGCTAAAATGAAGCATGGGATATTCAGGACGTCAACACTTATGGTACCAAAACAGCAGGCCATCTCGTCATACCCGAAGAAATCTTCCTCCCATGTTAAGAATAAAAGTCCCTTTGAAAAGCCTCAGCTTGGGAATCCCCTGGGCTCTGATCAGGTACAAGACAATGCAGTCAATTCATCTTGTGAAGCAGGAATGTCCATAAAATCTGACGGAACAAGGAGGAAAGGAGATGTTGAGTTCGAGAGGCAAATAGCCATGGCTTTGTCTGCAACTGCAGACAACCAACAGAGCTCTCAAGTGAACAATACGAAGAAAGTTCGTGAAATAACAAAAATAAGTAATAGCTCGTCAGTTTCTGACCAAGTAATATCCACGGCTTTCGGTTCTAAGAAAGTAGATTCTCCCCTTTGTTGGCTTGAGGTGTATTGCAATGGGGAAAACATGGATGGGAAATGGGTCCATGTCGATGCTGTTAATGGAATGATAGATGCAGAGCAAAACATTGAAGCAGCAGCTGCCGCATGCAAAACCGTTCTCAGATATGTTGTTGCATTTGCTGCTGGTGGAGCTAAAGATGTCACTCGCAGGTACTGTACAAAGTGGCACACTATTTCATCCAAACGGGTGTCTTCAGTGTGGTGGGATATGGTATTAGCACCGTTAGTACATCTCGAGTCAGGTGCAACTCACGATGAAGACATTGCTCTGAGAAATTTCAATGGCCTAAATCCTGTTTCTAGTAGAGCTTCCTCGAGTAGCTCGTCGTTTGGTATAAGGAGTGCTCTTGAAGATATGGAGTTGGCTACACGGGCGCTGACTGAGTCTCTTCCTACTAACCAGCAGGCTTATAAAAGTCATGAAATATATGCTATTGAGAAATGGCTTCACAAGAACCAGATACTTCACCCAAAAGGTCCAGTTCTGGGATTTTGCTCTGGTCATCCAGTATATCCTCGAACCTGTGTGCAGACTCTTAAAACAAAAGAAAGATGGCTTCGTGATGGGCTACAACTTAAGGCGAATGAAGTTCCCTCAAAGATTCTTAAGCGAAACTCGAAGTTCAAGAAAGTAAAAGATTTTGAAGATGGCGACAACAACATTAAAGGTGGTTCTTCTTGCATGGAACTATATGGGAAGTGGCAAATGGAACCATTGTGTCTCCCTCCCGCTGTTAATGGAATTGTGCCCAAGAACGAGCGCGGTCAAGTTGATGTCTGGTCTGAGAAATGTCTCCCACCTGGAACAGTCCACTTAAGGTTTCCTCGAATATTTGCGGTTGCTAAGAGATTCGGTATAGATTATGCACCTGCCATGGTTGGTTTCGAGTACAGAAGTGGAGGTGCTACTCCTATTTTTGAAGGTATTGTGGTCTGTACCGAGTTCAAAGACACAATCCTCGAGGCATATGCAGAAGAACAAGAAAAGAAAGAAGAAGAGGAGAGAAGAAGAAATGAGGCACAAGCAGCTTCGAGATGGTATCAGCTTCTTTCGTCTATCTTAACCCGTGAAAGATTGAAAAACCGTTACGCTAATAACTCTAACGATGTCGAAGCCAAGAGTTTGGAAGTGAATTCAGAAACAGTCGTTAAGGCAAAGAATGTGAAAGCACCTGAAAAGCAGAGAGTGGCTAAGAGAGGAGAAAAGTCACGAGTAAGAAAGTCTCGTAATGAAGATGAAAGTCATGAACATGTGTTTCTTGATGAGGAAGAAACCTTTGATGAGGAAACCTCTGTGAAAACGAAACGCTGCAAATGTGGCTTCTCTGTCGAAGTTGAACAAATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000111 GO:0000217 GO:0000404 GO:0000405 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007346 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010564 GO:0016020 GO:0016043 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0071942 GO:0071944 GO:0090304 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901987 GO:1901990 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

BHD_1 BHD_2 BHD_3 Rad4 Transglut_core

Protein Analysis

865

Amino Acids

96.28

Weight (kDa)

8.65

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transglut_core	PF01841	188 - 252	1.6e-06	Transglutaminase-like superfamily
Rad4	PF03835	382 - 538	1.1e-24	Rad4 transglutaminase-like domain
BHD_1	PF10403	544 - 593	5.6e-16	Rad4 beta-hairpin domain 1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16630 AT5G16630 AT5G16630
fragaria_vesca	FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770
malus_domestica	MD17G1258300.v1.1
prunus_persica	Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1
pyrus_communis	pycom17g26020
rosa_chinensis	RchiOBHm_Chr3g0493161
rosa_laevigata	RLG00000022722 RLG00000022723 RLG00000022724
rosa_multiflora	Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391760
rosa_rugosa	Rorug03G0259500 Rorug03G0259600 Rorug03G0259700
rosa_samantha	Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000
rosa_wichuraiana	Rw3G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1662
AarI	CACCTGC	1 cut(s)	2128
AasI	GACNNNNNNGTC	1 cut(s)	980
AatII	GACGTC	1 cut(s)	845
AbsI	CCTCGAGG	1 cut(s)	2210
Acc36I	ACCTGC	2 cut(s)	1389, 2128
Acc65I	GGTACC	1 cut(s)	856
AccB1I	GGYRCC	1 cut(s)	856
AccII	CGCG	1 cut(s)	2013
AciI	CCGC	8 cut(s)	132, 139, 410, 683, 1332, 1980, 2013, 2087
AclI	AACGTT	1 cut(s)	198
AclWI	GGATC	1 cut(s)	476
AcsI	RAATTY	3 cut(s)	335, 1525, 2383
AcuI	CTGAAG	1 cut(s)	1428
AcyI	GRCGYC	1 cut(s)	842
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	138, 941, 1224, 1736
AflII	CTTAAG	3 cut(s)	1826, 1856, 2065
AflIII	ACRYGT	1 cut(s)	2500
AjnI	CCWGG	3 cut(s)	775, 951, 2050
Alw21I	GWGCWC	3 cut(s)	432, 1106, 1597
Alw26I	GTCTC	4 cut(s)	1641, 1976, 2048, 2478
Alw44I	GTGCAC	1 cut(s)	428
AlwI	GGATC	1 cut(s)	476
AlwNI	CAGNNNCTG	3 cut(s)	1169, 1328, 1404
Ama87I	CYCGRG	5 cut(s)	96, 545, 1484, 1564, 2210
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	3 cut(s)	780, 870, 1534
ApaLI	GTGCAC	1 cut(s)	428
ApeKI	GCWGC	9 cut(s)	81, 497, 695, 1322, 1325, 1328, 1370, 2276, 2559
ApoI	RAATTY	3 cut(s)	335, 1525, 2383
Asp718I	GGTACC	1 cut(s)	856
AspLEI	GCGC	4 cut(s)	86, 175, 1627, 2013
AspS9I	GGNCC	3 cut(s)	780, 1270, 1727
AsuC2I	CCSGG	1 cut(s)	739
AsuHPI	GGTGA	1 cut(s)	1709
AvaI	CYCGRG	5 cut(s)	96, 545, 1484, 1564, 2210
AvaII	GGWCC	2 cut(s)	1270, 1727
BaeGI	GKGCMC	2 cut(s)	432, 2001
BaeI	ACNNNNGTAYC	2 cut(s)	519, 552
BanI	GGYRCC	1 cut(s)	856
BanII	GRGCYC	2 cut(s)	959, 1106
BarI	GAAGNNNNNNTAC	4 cut(s)	362, 387, 394, 419
BauI	CACGAG	1 cut(s)	2460
BbsI	GAAGAC	4 cut(s)	267, 402, 1434, 1515
Bbv12I	GWGCWC	3 cut(s)	432, 1106, 1597
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	9 cut(s)	93, 484, 707, 1315, 1334, 1337, 1357, 2288, 2546
BccI	CCATC	7 cut(s)	526, 881, 1253, 1797, 1808, 1892, 2280
BceAI	ACGGC	1 cut(s)	1203
BcgI	CGANNNNNNTGC	4 cut(s)	1475, 1509, 2201, 2235
BciT130I	CCWGG	3 cut(s)	777, 953, 2052
BclI	TGATCA	1 cut(s)	961
BcnI	CCSGG	1 cut(s)	739
BcoDI	GTCTC	4 cut(s)	1641, 1976, 2048, 2478
BfaI	CTAG	7 cut(s)	9, 48, 71, 203, 276, 650, 1551
BfmI	CTRYAG	1 cut(s)	1086
BfoI	RGCGCY	3 cut(s)	87, 176, 1628
BfrI	CTTAAG	3 cut(s)	1826, 1856, 2065
BfuAI	ACCTGC	2 cut(s)	1389, 2128
BlpI	GCTNAGC	1 cut(s)	135
Bme1390I	CCNGG	4 cut(s)	739, 777, 953, 2052
Bme18I	GGWCC	2 cut(s)	1270, 1727
BmeT110I	CYCGRG	5 cut(s)	96, 545, 1484, 1564, 2210
BmgT120I	GGNCC	3 cut(s)	780, 1270, 1727
BmiI	GGNNCC	4 cut(s)	781, 858, 1271, 1962
BmrFI	CCNGG	4 cut(s)	739, 777, 953, 2052
BmrI	ACTGGG	2 cut(s)	265, 615
BmsI	GCATC	4 cut(s)	346, 773, 1270, 1291
BmuI	ACTGGG	2 cut(s)	265, 615
BpiI	GAAGAC	4 cut(s)	267, 402, 1434, 1515
BplI	GAGNNNNNCTC	2 cut(s)	2525, 2557
Bpu10I	CCTNAGC	1 cut(s)	936
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuEI	CTTGAG	2 cut(s)	1092, 1250
BpuMI	CCSGG	1 cut(s)	739
BsaHI	GRCGYC	1 cut(s)	842
BsaJI	CCNNGG	7 cut(s)	88, 776, 951, 952, 1068, 1185, 2124
Bsc4I	CCNNNNNNNGG	4 cut(s)	138, 941, 1224, 1736
Bse1I	ACTGG	5 cut(s)	260, 621, 705, 1730, 1757
Bse3DI	GCAATG	2 cut(s)	1249, 1512
BseBI	CCWGG	3 cut(s)	777, 953, 2052
BseDI	CCNNGG	7 cut(s)	88, 776, 951, 952, 1068, 1185, 2124
BseGI	GGATG	6 cut(s)	221, 644, 764, 1264, 1427, 1753
BseLI	CCNNNNNNNGG	4 cut(s)	138, 941, 1224, 1736
BseMI	GCAATG	2 cut(s)	1249, 1512
BseMII	CTCAG	6 cut(s)	618, 950, 1363, 1511, 1623, 2025
BseNI	ACTGG	5 cut(s)	260, 621, 705, 1730, 1757
BseRI	GAGGAG	2 cut(s)	2264, 2463
BseSI	GKGCMC	2 cut(s)	432, 2001
BseXI	GCAGC	9 cut(s)	93, 484, 707, 1315, 1334, 1337, 1357, 2288, 2546
BsgI	GTGCAG	1 cut(s)	1799
Bsh1236I	CGCG	1 cut(s)	2013
BshFI	GGCC	3 cut(s)	782, 872, 1536
BshNI	GGYRCC	1 cut(s)	856
BsiHKAI	GWGCWC	3 cut(s)	432, 1106, 1597
BsiHKCI	CYCGRG	5 cut(s)	96, 545, 1484, 1564, 2210
BsiSI	CCGG	1 cut(s)	739
BslFI	GGGAC	1 cut(s)	906
BslI	CCNNNNNNNGG	4 cut(s)	138, 941, 1224, 1736
BsmAI	GTCTC	4 cut(s)	1641, 1976, 2048, 2478
BsmFI	GGGAC	1 cut(s)	906
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	3 cut(s)	782, 872, 1536
BsoBI	CYCGRG	5 cut(s)	96, 545, 1484, 1564, 2210
Bsp1286I	GDGCHC	5 cut(s)	432, 959, 1106, 1597, 2001
Bsp1407I	TGTACA	1 cut(s)	1406
Bsp143I	GATC	2 cut(s)	481, 961
Bsp1720I	GCTNAGC	1 cut(s)	135
Bsp19I	CCATGG	2 cut(s)	1068, 2124
BspACI	CCGC	8 cut(s)	132, 139, 410, 683, 1332, 1980, 2013, 2087
BspANI	GGCC	3 cut(s)	782, 872, 1536
BspCNI	CTCAG	6 cut(s)	619, 949, 1362, 1512, 1624, 2026
BspFNI	CGCG	1 cut(s)	2013
BspHI	TCATGA	2 cut(s)	1669, 2494
BspLI	GGNNCC	4 cut(s)	781, 858, 1271, 1962
BspMAI	CTGCAG	1 cut(s)	1090
BspMI	ACCTGC	2 cut(s)	1389, 2128
BspPI	GGATC	1 cut(s)	476
BspQI	GCTCTTC	1 cut(s)	681
BspT107I	GGYRCC	1 cut(s)	856
BspTI	CTTAAG	3 cut(s)	1826, 1856, 2065
BsrDI	GCAATG	2 cut(s)	1249, 1512
BsrGI	TGTACA	1 cut(s)	1406
BsrI	ACTGG	5 cut(s)	260, 621, 705, 1730, 1757
BssECI	CCNNGG	7 cut(s)	88, 776, 951, 952, 1068, 1185, 2124
BssMI	GATC	2 cut(s)	481, 961
BssNI	GRCGYC	1 cut(s)	842
BssSI	CACGAG	1 cut(s)	2460
BssT1I	CCWWGG	2 cut(s)	1068, 2124
Bst2BI	CACGAG	1 cut(s)	2460
Bst2UI	CCWGG	3 cut(s)	777, 953, 2052
Bst6I	CTCTTC	4 cut(s)	582, 681, 1644, 2241
BstACI	GRCGYC	1 cut(s)	842
BstAFI	CTTAAG	3 cut(s)	1826, 1856, 2065
BstAPI	GCANNNNNTGC	3 cut(s)	383, 1328, 1370
BstAUI	TGTACA	1 cut(s)	1406
BstC8I	GCNNGC	7 cut(s)	36, 171, 447, 693, 870, 1336, 1656
BstDSI	CCRYGG	4 cut(s)	88, 1068, 1185, 2124
BstF5I	GGATG	6 cut(s)	221, 644, 764, 1264, 1427, 1753
BstFNI	CGCG	1 cut(s)	2013
BstH2I	RGCGCY	3 cut(s)	87, 176, 1628
BstHHI	GCGC	4 cut(s)	86, 175, 1627, 2013
BstKTI	GATC	2 cut(s)	484, 964
BstMAI	GTCTC	4 cut(s)	1641, 1976, 2048, 2478
BstMBI	GATC	2 cut(s)	481, 961
BstNI	CCWGG	3 cut(s)	777, 953, 2052
BstNSI	RCATGY	2 cut(s)	1338, 2504
BstSCI	CCNGG	4 cut(s)	737, 775, 951, 2050
BstSFI	CTRYAG	1 cut(s)	1086
BstSLI	GKGCMC	2 cut(s)	432, 2001
BstUI	CGCG	1 cut(s)	2013
BstV1I	GCAGC	9 cut(s)	93, 484, 707, 1315, 1334, 1337, 1357, 2288, 2546
BstV2I	GAAGAC	4 cut(s)	267, 402, 1434, 1515
BstXI	CCANNNNNNTGG	1 cut(s)	2374
BsuRI	GGCC	3 cut(s)	782, 872, 1536
BtgI	CCRYGG	4 cut(s)	88, 1068, 1185, 2124
BtsCI	GGATG	6 cut(s)	221, 644, 764, 1264, 1427, 1753
BtsIMutI	CAGTG	3 cut(s)	475, 698, 1452
BveI	ACCTGC	2 cut(s)	1389, 2128
Cac8I	GCNNGC	7 cut(s)	36, 171, 447, 693, 870, 1336, 1656
CaiI	CAGNNNCTG	3 cut(s)	1169, 1328, 1404
CciI	TCATGA	2 cut(s)	1669, 2494
CfoI	GCGC	4 cut(s)	86, 175, 1627, 2013
Cfr13I	GGNCC	3 cut(s)	780, 1270, 1727
CseI	GACGC	1 cut(s)	188
DpnI	GATC	2 cut(s)	483, 963
DpnII	GATC	2 cut(s)	481, 961
DrdI	GACNNNNNNGTC	1 cut(s)	980
DseDI	GACNNNNNNGTC	1 cut(s)	980
Eam1104I	CTCTTC	4 cut(s)	582, 681, 1644, 2241
EarI	CTCTTC	4 cut(s)	582, 681, 1644, 2241
EciI	GGCGGA	1 cut(s)	425
Ecl136II	GAGCTC	1 cut(s)	1104
Eco130I	CCWWGG	2 cut(s)	1068, 2124
Eco24I	GRGCYC	2 cut(s)	959, 1106
Eco47I	GGWCC	2 cut(s)	1270, 1727
Eco47III	AGCGCT	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	1104
Eco57I	CTGAAG	1 cut(s)	1428
Eco88I	CYCGRG	5 cut(s)	96, 545, 1484, 1564, 2210
EcoICRI	GAGCTC	1 cut(s)	1104
EcoRI	GAATTC	1 cut(s)	2383
EcoRII	CCWGG	3 cut(s)	775, 951, 2050
EcoT14I	CCWWGG	2 cut(s)	1068, 2124
EcoT22I	ATGCAT	1 cut(s)	379
EcoT38I	GRGCYC	2 cut(s)	959, 1106
ErhI	CCWWGG	2 cut(s)	1068, 2124
FalI	AAGNNNNNCTT	2 cut(s)	416, 448
FaqI	GGGAC	1 cut(s)	906
FauI	CCCGC	2 cut(s)	132, 1987
FauNDI	CATATG	1 cut(s)	2218
FbaI	TGATCA	1 cut(s)	961
FokI	GGATG	6 cut(s)	228, 631, 751, 1271, 1414, 1740
FriOI	GRGCYC	2 cut(s)	959, 1106
FspBI	CTAG	7 cut(s)	9, 48, 71, 203, 276, 650, 1551
GlaI	GCGC	4 cut(s)	85, 174, 1626, 2012
HaeII	RGCGCY	3 cut(s)	87, 176, 1628
HaeIII	GGCC	3 cut(s)	782, 872, 1536
HapII	CCGG	1 cut(s)	739
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	4 cut(s)	86, 175, 1627, 2013
Hin1I	GRCGYC	1 cut(s)	842
Hin6I	GCGC	4 cut(s)	84, 173, 1625, 2011
HinP1I	GCGC	4 cut(s)	84, 173, 1625, 2011
HincII	GTYRAC	3 cut(s)	61, 466, 846
HindII	GTYRAC	3 cut(s)	61, 466, 846
HpaII	CCGG	1 cut(s)	739
HphI	GGTGA	1 cut(s)	1709
Hpy166II	GTNNAC	7 cut(s)	61, 154, 430, 466, 846, 1114, 2062
Hpy188I	TCNGA	9 cut(s)	253, 628, 961, 1021, 1171, 1352, 1521, 2035, 2389
Hpy8I	GTNNAC	7 cut(s)	61, 154, 430, 466, 846, 1114, 2062
Hpy99I	CGWCG	2 cut(s)	182, 1579
HpyAV	CCTTC	1 cut(s)	2165
HpyCH4IV	ACGT	2 cut(s)	198, 842
HpySE526I	ACGT	2 cut(s)	198, 842
Hsp92I	GRCGYC	1 cut(s)	842
HspAI	GCGC	4 cut(s)	84, 173, 1625, 2011
KpnI	GGTACC	1 cut(s)	860
Ksp22I	TGATCA	1 cut(s)	961
Kzo9I	GATC	2 cut(s)	481, 961
LguI	GCTCTTC	1 cut(s)	681
LmnI	GCTCC	1 cut(s)	1379
Lsp1109I	GCAGC	9 cut(s)	93, 484, 707, 1315, 1334, 1337, 1357, 2288, 2546
LweI	GCATC	4 cut(s)	346, 773, 1270, 1291
MaeI	CTAG	7 cut(s)	9, 48, 71, 203, 276, 650, 1551
MaeII	ACGT	2 cut(s)	198, 842
MaeIII	GTNAC	4 cut(s)	553, 1390, 2336, 2457
MalI	GATC	2 cut(s)	483, 963
MboI	GATC	2 cut(s)	481, 961
MhlI	GDGCHC	5 cut(s)	432, 959, 1106, 1597, 2001
MluCI	AATT	6 cut(s)	25, 335, 985, 1525, 1992, 2383
MlyI	GAGTC	3 cut(s)	1496, 1643, 1777
Mph1103I	ATGCAT	1 cut(s)	379
MslI	CAYNNNNRTG	2 cut(s)	1278, 2499
MspA1I	CMGCKG	3 cut(s)	683, 1328, 1982
MspCI	CTTAAG	3 cut(s)	1826, 1856, 2065
MspI	CCGG	1 cut(s)	739
MspR9I	CCNGG	4 cut(s)	739, 777, 953, 2052
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	3 cut(s)	777, 953, 2052
MvnI	CGCG	1 cut(s)	2013
NciI	CCSGG	1 cut(s)	739
NcoI	CCATGG	2 cut(s)	1068, 2124
NdeI	CATATG	1 cut(s)	2218
NdeII	GATC	2 cut(s)	481, 961
NlaIV	GGNNCC	4 cut(s)	781, 858, 1271, 1962
NmuCI	GTSAC	2 cut(s)	1390, 2457
NsiI	ATGCAT	1 cut(s)	379
NspI	RCATGY	2 cut(s)	1338, 2504
PaeI	GCATGC	1 cut(s)	1338
PaeR7I	CTCGAG	5 cut(s)	96, 545, 1484, 1564, 2210
PagI	TCATGA	2 cut(s)	1669, 2494
PaqCI	CACCTGC	1 cut(s)	2128
PasI	CCCWGGG	1 cut(s)	952
PciI	ACATGT	1 cut(s)	2500
PciSI	GCTCTTC	1 cut(s)	681
PcsI	WCGNNNNNNNCGW	3 cut(s)	589, 884, 1571
PctI	GAATGC	1 cut(s)	379
PfeI	GAWTC	9 cut(s)	128, 248, 490, 665, 794, 946, 1211, 1852, 2100
PflFI	GACNNNGTC	1 cut(s)	1633
PleI	GAGTC	3 cut(s)	1495, 1642, 1777
PpsI	GAGTC	3 cut(s)	1495, 1642, 1777
PscI	ACATGT	1 cut(s)	2500
PsiI	TTATAA	1 cut(s)	1662
Psp124BI	GAGCTC	1 cut(s)	1106
Psp1406I	AACGTT	1 cut(s)	198
Psp6I	CCWGG	3 cut(s)	775, 951, 2050
PspGI	CCWGG	3 cut(s)	775, 951, 2050
PspN4I	GGNNCC	4 cut(s)	781, 858, 1271, 1962
PspPI	GGNCC	3 cut(s)	780, 1270, 1727
PspXI	VCTCGAGB	2 cut(s)	1564, 2210
PstI	CTGCAG	1 cut(s)	1090
PstNI	CAGNNNCTG	3 cut(s)	1169, 1328, 1404
PsyI	GACNNNGTC	1 cut(s)	1633
PvuII	CAGCTG	1 cut(s)	1328
RseI	CAYNNNNRTG	2 cut(s)	1278, 2499
SacI	GAGCTC	1 cut(s)	1106
SapI	GCTCTTC	1 cut(s)	681
Sau3AI	GATC	2 cut(s)	481, 961
Sau96I	GGNCC	3 cut(s)	780, 1270, 1727
SchI	GAGTC	3 cut(s)	1496, 1643, 1777
ScrFI	CCNGG	4 cut(s)	739, 777, 953, 2052
SduI	GDGCHC	5 cut(s)	432, 959, 1106, 1597, 2001
SfaNI	GCATC	4 cut(s)	346, 773, 1270, 1291
SfcI	CTRYAG	1 cut(s)	1086
Sfr274I	CTCGAG	5 cut(s)	96, 545, 1484, 1564, 2210
SinI	GGWCC	2 cut(s)	1270, 1727
SlaI	CTCGAG	5 cut(s)	96, 545, 1484, 1564, 2210
SmiMI	CAYNNNNRTG	2 cut(s)	1278, 2499
SphI	GCATGC	1 cut(s)	1338
Sse9I	AATT	6 cut(s)	25, 335, 985, 1525, 1992, 2383
SsiI	CCGC	8 cut(s)	132, 139, 410, 683, 1332, 1980, 2013, 2087
SspI	AATATT	1 cut(s)	2082
SspMI	CTAG	7 cut(s)	9, 48, 71, 203, 276, 650, 1551
SstI	GAGCTC	1 cut(s)	1106
StyD4I	CCNGG	4 cut(s)	737, 775, 951, 2050
StyI	CCWWGG	2 cut(s)	1068, 2124
TaiI	ACGT	2 cut(s)	201, 845
TasI	AATT	6 cut(s)	25, 335, 985, 1525, 1992, 2383
TatI	WGTACW	3 cut(s)	1406, 1477, 2139
TauI	GCSGC	1 cut(s)	1334
TfiI	GAWTC	9 cut(s)	128, 248, 490, 665, 794, 946, 1211, 1852, 2100
TscAI	CASTG	3 cut(s)	475, 705, 1452
TseFI	GTSAC	2 cut(s)	1390, 2457
TseI	GCWGC	9 cut(s)	81, 497, 695, 1322, 1325, 1328, 1370, 2276, 2559
Tsp45I	GTSAC	2 cut(s)	1390, 2457
TspGWI	ACGGA	1 cut(s)	1038
TspRI	CASTG	3 cut(s)	475, 705, 1452
Tth111I	GACNNNGTC	1 cut(s)	1633
Vha464I	CTTAAG	3 cut(s)	1826, 1856, 2065
VneI	GTGCAC	1 cut(s)	428
VpaK11BI	GGWCC	2 cut(s)	1270, 1727
XapI	RAATTY	3 cut(s)	335, 1525, 2383
XbaI	TCTAGA	4 cut(s)	8, 47, 70, 202
XceI	RCATGY	2 cut(s)	1338, 2504
XhoI	CTCGAG	5 cut(s)	96, 545, 1484, 1564, 2210
XspI	CTAG	7 cut(s)	9, 48, 71, 203, 276, 650, 1551
ZraI	GACGTC	1 cut(s)	843
Zsp2I	ATGCAT	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.