Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0005431

Physical Location & Seq

Genomic Coordinates Reverse (-)

37529497 .. 37538914

Gene Structure 9418 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG344700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2493 bp

ATGGGTGGTCATGAAGTGACTATTGAAATAAATGAAACACCTGATTCCAGAAGACGGAAACGTAGTCGTCGGGCTTCAGTTGAAGATAAGGAATTGGCTGAACTTGTTCATAAAGCTCATTTACTCTGTTTAATTGCACGGGGAAGATTGATTGACAGAGCTTGTGATGATGCTCTTATTCAGGCTTCCTTACTTTCTGTTCTACCAGAACACTTGCTGCATATATCCAAGGTTGCAAAACTAACTGCGAAGCATTTGCTTCCCCTAGTCTTTTGGTTTCAAAATAATTTCCATGTTAGAACTACAAGCGTGAGAAGATCATTTCATTCGGCTCTGAACTTTGCCCTTGAAACTCATGAAGGGACCCAAGAAGAGATTGCTGCATTGTCTGTGGCACTCTTCAGAGCTTTGAATCTTACAACCCGGTTGGTGTCCATTTTGAATGTTGCCTCCTTAAAACCAGAGGCTGACAAGACTGACTGTTCTAGTGAAGATGCAAGCAGATTGAGTAAGGGAATATTCAGCACGTCAACCCCAATGGTGGCTAGAAGAAATGAGGTTCCTGTGTCTCCTGCTACAAGCAGTGAGAGAAACTCTGTCGGTGAAACTCCTCAGATCGGTTCATACAAAAGAGAGGACTGCCACCTTACCAGTAGCAAAACTCGGTGCAAAGGTTCTTATGTTTATGAGTTGAATGATAAAATGACAGATACTTTAGCATGTGAGGAATGGAATGATATGTCTGAAGCATGCCATACTAAGAAATCACAGGAATCAAAGAGAAGAGGGGATCTTGAGTTTGAACTGCAGTTGCAAATGGCTCTTTCCGCCACGGCAGTTCCGACTGCGGGTATAAAAATAGGTTCAGATAATAAAGACTCAAACAGTAATGTTGCAAAAAGATTGAAAAGAACTGTTTGTGAAGAATCACCAATTTCCTCCCAGAGTATCTCTACTGCAGTTGGATCGAGAAAAGAAGGATCCCCATTGTACTGGGCAGAAGTATACTGCAATGGGGAAAACTTGACTGGAAAGTGGCTGCATATTGATGCTATCAATGCAATTATTGATGGAGAACAGAAGGTCGAAGCTGTAGCTGCTGCATGCAAAACGCCTTTGAGATATGTAGTTGCTTTCGCTGGGAATGGGGCTAAAGATGTGACTCGCAGGTACTGTCTCAAGTGGTATCAGATAGCATCTCAACGAGTGAATCCAATTTGGTGGGATAAGGTATTGGCACCACTGAGAGATTTAGAGGTGAGAGCAACAGGAGGCATGGTCCATTTGGATAAAGAACACACTGGTTCCTCATCTGAACATAATAAAGAAAATTTTTTGAACAAGTCTGGCAGTGCGGAAATGAATTATCTTCCAGGCAATGTCAACTTGAATGTGAAGTCTAGCCTAGAAGGCTCAAAAGAAACTGGAAAGGGGCTTGATGTAGAATCTTCTTCGAGGAGTTTTGAGATTGCTACCAGGAACTCCCTTGAGGATATGGAGTTGGAAACTAGGGCATTAACCGAGCCTCTTCCTACGAATCAACAGGCCTATAAAAACCATCACCTTTATGCTATTGAAAAATGGCTTACCAAGCATCAGGTACTTCATCCGAAAGGGCCAATTCTGGGGTTTTGTTCCGGTCATCCAGTTTACCCTAGGACATGTGTGCAAACTCTAAAGACAAAACACAAATGGCTGAGGGAGGGGCTGCAAGTTAAACCTAATGAGCGTCCTGTCAAGGAGTTGAAACGTTCTATCAAGCTTCAAAAAGTTCAGGTTCTTGAAGATGATGATTATGTCGGGGGTAATTCAATTGGAACTATCGAACTTTATGGGAAGTGGCAACTTGAACCACTGCATCTGCCTCATGCTATTAATGGAAAAGTGCCAAAGAATGATCATGGTAACGTGGAAGTATGGTCTGAGAAGTGCCTTCCACCAGGGACTGTGCATTTGAGGTTACCAAGGGTGTTTTCGGTTGCCAAGAGACTAGAAATTGATTACGCTCCCGCCATGGTTGATTTTGAATTCAAAAATGGTCAATCATATCCTGTCTTTGATGGTATAGTGGTGTGTGCTGAGTTCAAGGATGCAATATTGGAGGCTTATGCAGAGGAACGGGACAGAAGAGAGGCTGTAGAAAAGAAAAGATATGAAATGCAAGCTATTTCACGGTGGTATCAGCTTCTGTCTTCCATTGTAACTCGGCAGAGGATACAAAACCGTTATGGGGAGTCTTCATCTACAGCATCAGCTGAGACTGAAAATGTGAATAGTAAACTAGATGTACAGCTTGGTGGTGGTCAGAATGATGAGGAACCTCTTGGATGCCAGCAAGAAGGCCTACATGAAAATACACCGGATGATCCTACCATCGAGCTGGACAATCATGAGCATGTATTCTTGACAGAAAACCAGTGTTTTGATGAAGACAACTTGGTAGTTACAAAGAGGTGTCTCTGTGGATTTTCAGTGCAAGTGGAAGAACTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000109 GO:0000111 GO:0000217 GO:0000404 GO:0000405 GO:0000715 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0003690 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005739 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006294 GO:0006298 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007346 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010564 GO:0016020 GO:0016043 GO:0022607 GO:0030983 GO:0031974 GO:0031981 GO:0032135 GO:0032991 GO:0033554 GO:0034622 GO:0034641 GO:0034644 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051276 GO:0051716 GO:0051726 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070911 GO:0070914 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0071942 GO:0071944 GO:0090304 GO:0097159 GO:0104004 GO:1901360 GO:1901363 GO:1901987 GO:1901990 GO:1990391

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

BHD_1 BHD_2 BHD_3 Rad4 Transglut_core

Protein Analysis

830

Amino Acids

93.15

Weight (kDa)

6.43

Isoelectric Point (pI)

48.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad4	PF03835	314 - 417	2e-19	Rad4 transglutaminase-like domain
BHD_1	PF10403	507 - 556	4.1e-17	Rad4 beta-hairpin domain 1
BHD_2	PF10404	560 - 622	1.3e-12	Rad4 beta-hairpin domain 2
BHD_3	PF10405	629 - 702	2.2e-26	Rad4 beta-hairpin domain 3

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16630 AT5G16630 AT5G16630
fragaria_vesca	FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770
malus_domestica	MD17G1258300.v1.1
prunus_persica	Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1
pyrus_communis	pycom17g26020
rosa_chinensis	RchiOBHm_Chr3g0493161
rosa_laevigata	RLG00000022722 RLG00000022723 RLG00000022724
rosa_multiflora	Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001
rosa_roxburghii	Rroxscaffold_6G00391760
rosa_rugosa	Rorug03G0259500 Rorug03G0259600 Rorug03G0259700
rosa_samantha	Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000
rosa_wichuraiana	Rw3G027140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1158
AccB1I	GGYRCC	1 cut(s)	1237
AccI	GTMKAC	1 cut(s)	1005
AciI	CCGC	4 cut(s)	828, 848, 1355, 2010
AclI	AACGTT	1 cut(s)	1750
AclWI	GGATC	5 cut(s)	798, 973, 975, 988, 2360
AcsI	RAATTY	2 cut(s)	1330, 2027
AcuI	CTGAAG	3 cut(s)	60, 385, 765
AfaI	GTAC	4 cut(s)	992, 1172, 1602, 2289
AfiI	CCNNNNNNNGG	6 cut(s)	54, 541, 617, 848, 1625, 2230
AflIII	ACRYGT	1 cut(s)	1661
AjiI	CACGTC	1 cut(s)	528
AjnI	CCWGG	3 cut(s)	1372, 1475, 1939
AjuI	GAANNNNNNNTTGG	2 cut(s)	1957, 1989
Alw26I	GTCTC	5 cut(s)	573, 1181, 1981, 2252, 2462
AlwI	GGATC	5 cut(s)	798, 973, 975, 988, 2360
AlwNI	CAGNNNCTG	4 cut(s)	467, 1173, 1946, 2188
AoxI	GGCC	3 cut(s)	1545, 1616, 2341
ApeKI	GCWGC	6 cut(s)	217, 380, 1039, 1097, 1100, 1708
ApoI	RAATTY	2 cut(s)	1330, 2027
ArsI	GACNNNNNNTTYG	2 cut(s)	1936, 1968
AseI	ATTAAT	1 cut(s)	1875
Asp700I	GAANNNNTTC	1 cut(s)	105
AspA2I	CCTAGG	1 cut(s)	1655
AspS9I	GGNCC	3 cut(s)	363, 1279, 1616
AsuC2I	CCSGG	1 cut(s)	424
AsuHPI	GGTGA	4 cut(s)	614, 921, 1270, 1553
AvaII	GGWCC	2 cut(s)	363, 1279
AvrII	CCTAGG	1 cut(s)	1655
BaeI	ACNNNNGTAYC	2 cut(s)	2162, 2195
BamHI	GGATCC	1 cut(s)	980
BanI	GGYRCC	1 cut(s)	1237
BbsI	GAAGAC	4 cut(s)	58, 2184, 2229, 2436
BbvCI	CCTCAGC	1 cut(s)	1697
BbvI	GCAGC	6 cut(s)	204, 367, 1026, 1084, 1087, 1695
BccI	CCATC	4 cut(s)	1064, 1566, 2054, 2381
BceAI	ACGGC	1 cut(s)	849
BcgI	CGANNNNNNTGC	4 cut(s)	238, 272, 948, 982
BciT130I	CCWGG	3 cut(s)	1374, 1477, 1941
BciVI	GTATCC	1 cut(s)	2208
BclI	TGATCA	1 cut(s)	1897
BcnI	CCSGG	1 cut(s)	424
BcoDI	GTCTC	5 cut(s)	573, 1181, 1981, 2252, 2462
BfaI	CTAG	9 cut(s)	266, 486, 546, 1401, 1406, 1509, 1656, 1991, 2282
BfmI	CTRYAG	6 cut(s)	806, 957, 1092, 2136, 2244, 2489
BfuAI	ACCTGC	1 cut(s)	1158
BfuI	GTATCC	1 cut(s)	2208
BglI	GCCNNNNNGGC	1 cut(s)	1410
BisI	GCNGC	6 cut(s)	218, 381, 1040, 1098, 1101, 1709
BlnI	CCTAGG	1 cut(s)	1655
BlsI	GCNGC	6 cut(s)	219, 382, 1041, 1099, 1102, 1710
Bme1390I	CCNGG	4 cut(s)	424, 1374, 1477, 1941
Bme18I	GGWCC	2 cut(s)	363, 1279
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	363, 1279, 1616
BmiI	GGNNCC	7 cut(s)	364, 365, 561, 982, 1239, 1306, 2319
BmrFI	CCNGG	4 cut(s)	424, 1374, 1477, 1941
BmrI	ACTGGG	1 cut(s)	1003
BmsI	GCATC	9 cut(s)	160, 484, 1039, 1205, 1603, 1867, 2080, 2258, 2318
BmuI	ACTGGG	1 cut(s)	1003
BpiI	GAAGAC	4 cut(s)	58, 2184, 2229, 2436
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu10I	CCTNAGC	1 cut(s)	1697
BpuEI	CTTGAG	3 cut(s)	815, 1163, 1508
BpuMI	CCSGG	1 cut(s)	424
BsaJI	CCNNGG	6 cut(s)	228, 831, 1655, 1940, 1964, 2013
BsaWI	WCCGGW	2 cut(s)	1637, 2359
BsaXI	ACNNNNNCTCC	2 cut(s)	1263, 1293
Bsc4I	CCNNNNNNNGG	6 cut(s)	54, 541, 617, 848, 1625, 2230
Bse1I	ACTGG	7 cut(s)	651, 998, 1033, 1306, 1429, 1646, 2416
Bse3DI	GCAATG	2 cut(s)	1018, 1384
BseBI	CCWGG	3 cut(s)	1374, 1477, 1941
BseDI	CCNNGG	6 cut(s)	228, 831, 1655, 1940, 1964, 2013
BseGI	GGATG	5 cut(s)	1606, 1642, 2095, 2333, 2368
BseLI	CCNNNNNNNGG	6 cut(s)	54, 541, 617, 848, 1625, 2230
BseMI	GCAATG	2 cut(s)	1018, 1384
BseMII	CTCAG	6 cut(s)	626, 1235, 1688, 1914, 2070, 2247
BseNI	ACTGG	7 cut(s)	651, 998, 1033, 1306, 1429, 1646, 2416
BseRI	GAGGAG	2 cut(s)	600, 1471
BseXI	GCAGC	6 cut(s)	204, 367, 1026, 1084, 1087, 1695
BseYI	CCCAGC	1 cut(s)	1139
BshFI	GGCC	3 cut(s)	1547, 1618, 2343
BshNI	GGYRCC	1 cut(s)	1237
BsiSI	CCGG	3 cut(s)	424, 1638, 2360
BslFI	GGGAC	3 cut(s)	376, 1957, 2135
BslI	CCNNNNNNNGG	6 cut(s)	54, 541, 617, 848, 1625, 2230
BsmAI	GTCTC	5 cut(s)	573, 1181, 1981, 2252, 2462
BsmFI	GGGAC	3 cut(s)	376, 1957, 2135
BsnI	GGCC	3 cut(s)	1547, 1618, 2343
Bsp1407I	TGTACA	1 cut(s)	2287
Bsp143I	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
Bsp19I	CCATGG	1 cut(s)	2013
BspACI	CCGC	4 cut(s)	828, 848, 1355, 2010
BspANI	GGCC	3 cut(s)	1547, 1618, 2343
BspCNI	CTCAG	6 cut(s)	625, 1236, 1689, 1915, 2071, 2248
BspHI	TCATGA	3 cut(s)	10, 355, 2389
BspLI	GGNNCC	7 cut(s)	364, 365, 561, 982, 1239, 1306, 2319
BspMAI	CTGCAG	2 cut(s)	810, 961
BspMI	ACCTGC	1 cut(s)	1158
BspPI	GGATC	5 cut(s)	798, 973, 975, 988, 2360
BspT107I	GGYRCC	1 cut(s)	1237
BsrDI	GCAATG	2 cut(s)	1018, 1384
BsrGI	TGTACA	1 cut(s)	2287
BsrI	ACTGG	7 cut(s)	651, 998, 1033, 1306, 1429, 1646, 2416
BssECI	CCNNGG	6 cut(s)	228, 831, 1655, 1940, 1964, 2013
BssMI	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
BssNAI	GTATAC	1 cut(s)	1006
BssT1I	CCWWGG	4 cut(s)	228, 1655, 1964, 2013
Bst1107I	GTATAC	1 cut(s)	1006
Bst2UI	CCWGG	3 cut(s)	1374, 1477, 1941
Bst4CI	ACNGT	8 cut(s)	482, 887, 916, 1175, 1948, 2175, 2225, 2490
Bst6I	CTCTTC	5 cut(s)	366, 404, 778, 1533, 2122
BstAUI	TGTACA	1 cut(s)	2287
BstC8I	GCNNGC	5 cut(s)	499, 751, 1105, 2163, 2333
BstDEI	CTNAG	7 cut(s)	612, 759, 1244, 1697, 1923, 2079, 2256
BstDSI	CCRYGG	2 cut(s)	831, 2013
BstEII	GGTNACC	1 cut(s)	1959
BstF5I	GGATG	5 cut(s)	1606, 1642, 2095, 2333, 2368
BstKTI	GATC	7 cut(s)	320, 618, 793, 968, 983, 1900, 2368
BstMAI	GTCTC	5 cut(s)	573, 1181, 1981, 2252, 2462
BstMBI	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
BstMWI	GCNNNNNNNGC	5 cut(s)	827, 1058, 1097, 1410, 1591
BstNI	CCWGG	3 cut(s)	1374, 1477, 1941
BstNSI	RCATGY	5 cut(s)	723, 753, 1107, 1665, 2399
BstPI	GGTNACC	1 cut(s)	1959
BstSCI	CCNGG	4 cut(s)	422, 1372, 1475, 1939
BstSFI	CTRYAG	6 cut(s)	806, 957, 1092, 2136, 2244, 2489
BstV1I	GCAGC	6 cut(s)	204, 367, 1026, 1084, 1087, 1695
BstV2I	GAAGAC	4 cut(s)	58, 2184, 2229, 2436
BstX2I	RGATCY	2 cut(s)	790, 980
BstXI	CCANNNNNNTGG	3 cut(s)	993, 1221, 2380
BstYI	RGATCY	2 cut(s)	790, 980
BstZ17I	GTATAC	1 cut(s)	1006
BsuI	GTATCC	1 cut(s)	2208
BsuRI	GGCC	3 cut(s)	1547, 1618, 2343
BtgI	CCRYGG	2 cut(s)	831, 2013
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	5 cut(s)	1606, 1642, 2095, 2333, 2368
BtsI	GCAGTG	3 cut(s)	589, 1357, 1853
BtsIMutI	CAGTG	7 cut(s)	589, 1241, 1299, 1357, 1853, 2423, 2478
BveI	ACCTGC	1 cut(s)	1158
Cac8I	GCNNGC	5 cut(s)	499, 751, 1105, 2163, 2333
CaiI	CAGNNNCTG	4 cut(s)	467, 1173, 1946, 2188
CciI	TCATGA	3 cut(s)	10, 355, 2389
Cfr13I	GGNCC	3 cut(s)	363, 1279, 1616
CseI	GACGC	1 cut(s)	1718
Csp6I	GTAC	4 cut(s)	991, 1171, 1601, 2288
CviQI	GTAC	4 cut(s)	991, 1171, 1601, 2288
DdeI	CTNAG	7 cut(s)	612, 759, 1244, 1697, 1923, 2079, 2256
DpnI	GATC	7 cut(s)	319, 617, 792, 967, 982, 1899, 2367
DpnII	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
Eam1104I	CTCTTC	5 cut(s)	366, 404, 778, 1533, 2122
EarI	CTCTTC	5 cut(s)	366, 404, 778, 1533, 2122
EciI	GGCGGA	1 cut(s)	817
Eco130I	CCWWGG	4 cut(s)	228, 1655, 1964, 2013
Eco147I	AGGCCT	2 cut(s)	1547, 2343
Eco47I	GGWCC	2 cut(s)	363, 1279
Eco57I	CTGAAG	3 cut(s)	60, 385, 765
Eco91I	GGTNACC	1 cut(s)	1959
EcoO109I	RGGNCCY	1 cut(s)	363
EcoO65I	GGTNACC	1 cut(s)	1959
EcoRI	GAATTC	1 cut(s)	2027
EcoRII	CCWGG	3 cut(s)	1372, 1475, 1939
EcoT14I	CCWWGG	4 cut(s)	228, 1655, 1964, 2013
ErhI	CCWWGG	4 cut(s)	228, 1655, 1964, 2013
FaqI	GGGAC	3 cut(s)	376, 1957, 2135
FauI	CCCGC	2 cut(s)	841, 2017
FbaI	TGATCA	1 cut(s)	1897
FblI	GTMKAC	1 cut(s)	1005
Fnu4HI	GCNGC	6 cut(s)	218, 381, 1040, 1098, 1101, 1709
FokI	GGATG	5 cut(s)	1593, 1629, 2102, 2340, 2375
Fsp4HI	GCNGC	6 cut(s)	218, 381, 1040, 1098, 1101, 1709
FspBI	CTAG	9 cut(s)	266, 486, 546, 1401, 1406, 1509, 1656, 1991, 2282
GluI	GCNGC	6 cut(s)	218, 381, 1040, 1098, 1101, 1709
GsaI	CCCAGC	1 cut(s)	1143
HaeIII	GGCC	3 cut(s)	1547, 1618, 2343
HapII	CCGG	3 cut(s)	424, 1638, 2360
HgaI	GACGC	1 cut(s)	1718
HincII	GTYRAC	2 cut(s)	531, 1384
HindII	GTYRAC	2 cut(s)	531, 1384
HindIII	AAGCTT	1 cut(s)	1760
HpaII	CCGG	3 cut(s)	424, 1638, 2360
HphI	GGTGA	4 cut(s)	614, 921, 1270, 1553
Hpy166II	GTNNAC	5 cut(s)	531, 1006, 1384, 1651, 2279
Hpy188III	TCNNGA	8 cut(s)	11, 48, 356, 794, 969, 1781, 2390, 2404
Hpy8I	GTNNAC	5 cut(s)	531, 1006, 1384, 1651, 2279
Hpy99I	CGWCG	1 cut(s)	72
HpyAV	CCTTC	6 cut(s)	353, 971, 1075, 1403, 1943, 2333
HpyCH4III	ACNGT	8 cut(s)	482, 887, 916, 1175, 1948, 2175, 2225, 2490
HpyCH4IV	ACGT	4 cut(s)	61, 527, 1750, 1908
HpyF10VI	GCNNNNNNNGC	5 cut(s)	827, 1058, 1097, 1410, 1591
HpyF3I	CTNAG	7 cut(s)	612, 759, 1244, 1697, 1923, 2079, 2256
HpySE526I	ACGT	4 cut(s)	61, 527, 1750, 1908
KflI	GGGWCCC	1 cut(s)	363
Ksp22I	TGATCA	1 cut(s)	1897
Kzo9I	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
LmnI	GCTCC	1 cut(s)	2011
Lsp1109I	GCAGC	6 cut(s)	204, 367, 1026, 1084, 1087, 1695
LweI	GCATC	9 cut(s)	160, 484, 1039, 1205, 1603, 1867, 2080, 2258, 2318
MaeI	CTAG	9 cut(s)	266, 486, 546, 1401, 1406, 1509, 1656, 1991, 2282
MaeII	ACGT	4 cut(s)	61, 527, 1750, 1908
MaeIII	GTNAC	6 cut(s)	16, 1159, 1904, 1959, 2200, 2443
MalI	GATC	7 cut(s)	319, 617, 792, 967, 982, 1899, 2367
MboI	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
MfeI	CAATTG	1 cut(s)	1812
MflI	RGATCY	2 cut(s)	790, 980
MlyI	GAGTC	3 cut(s)	872, 1156, 2243
MmeI	TCCRAC	3 cut(s)	866, 943, 1482
MroXI	GAANNNNTTC	1 cut(s)	105
MseI	TTAA	5 cut(s)	131, 455, 1517, 1716, 1875
MslI	CAYNNNNRTG	3 cut(s)	1047, 1566, 2394
MspA1I	CMGCKG	1 cut(s)	2255
MspI	CCGG	3 cut(s)	424, 1638, 2360
MspR9I	CCNGG	4 cut(s)	424, 1374, 1477, 1941
MunI	CAATTG	1 cut(s)	1812
MvaI	CCWGG	3 cut(s)	1374, 1477, 1941
MwoI	GCNNNNNNNGC	5 cut(s)	827, 1058, 1097, 1410, 1591
NciI	CCSGG	1 cut(s)	424
NcoI	CCATGG	1 cut(s)	2013
NdeII	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
NlaIV	GGNNCC	7 cut(s)	364, 365, 561, 982, 1239, 1306, 2319
NmeAIII	GCCGAG	1 cut(s)	2185
NmuCI	GTSAC	2 cut(s)	16, 1159
NspI	RCATGY	5 cut(s)	723, 753, 1107, 1665, 2399
PaeI	GCATGC	2 cut(s)	753, 1107
PagI	TCATGA	3 cut(s)	10, 355, 2389
PceI	AGGCCT	2 cut(s)	1547, 2343
PciI	ACATGT	1 cut(s)	1661
PcsI	WCGNNNNNNNCGW	1 cut(s)	839
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	7 cut(s)	44, 412, 773, 926, 1210, 1445, 1537
PkrI	GCNGC	6 cut(s)	219, 382, 1041, 1099, 1102, 1710
PleI	GAGTC	3 cut(s)	872, 1156, 2242
PpsI	GAGTC	3 cut(s)	872, 1156, 2242
PpuMI	RGGWCCY	1 cut(s)	363
PscI	ACATGT	1 cut(s)	1661
PshBI	ATTAAT	1 cut(s)	1875
Psp1406I	AACGTT	1 cut(s)	1750
Psp5II	RGGWCCY	1 cut(s)	363
Psp6I	CCWGG	3 cut(s)	1372, 1475, 1939
PspEI	GGTNACC	1 cut(s)	1959
PspFI	CCCAGC	1 cut(s)	1139
PspGI	CCWGG	3 cut(s)	1372, 1475, 1939
PspN4I	GGNNCC	7 cut(s)	364, 365, 561, 982, 1239, 1306, 2319
PspPI	GGNCC	3 cut(s)	363, 1279, 1616
PspPPI	RGGWCCY	1 cut(s)	363
PstI	CTGCAG	2 cut(s)	810, 961
PstNI	CAGNNNCTG	4 cut(s)	467, 1173, 1946, 2188
PsuI	RGATCY	2 cut(s)	790, 980
PvuII	CAGCTG	1 cut(s)	2255
RsaI	GTAC	4 cut(s)	992, 1172, 1602, 2289
RsaNI	GTAC	4 cut(s)	991, 1171, 1601, 2288
RseI	CAYNNNNRTG	3 cut(s)	1047, 1566, 2394
SaqAI	TTAA	5 cut(s)	131, 455, 1517, 1716, 1875
SatI	GCNGC	6 cut(s)	218, 381, 1040, 1098, 1101, 1709
Sau3AI	GATC	7 cut(s)	317, 615, 790, 965, 980, 1897, 2365
Sau96I	GGNCC	3 cut(s)	363, 1279, 1616
SchI	GAGTC	3 cut(s)	872, 1156, 2243
ScrFI	CCNGG	4 cut(s)	424, 1374, 1477, 1941
SfaNI	GCATC	9 cut(s)	160, 484, 1039, 1205, 1603, 1867, 2080, 2258, 2318
SfcI	CTRYAG	6 cut(s)	806, 957, 1092, 2136, 2244, 2489
SinI	GGWCC	2 cut(s)	363, 1279
SmiMI	CAYNNNNRTG	3 cut(s)	1047, 1566, 2394
SmlI	CTYRAG	3 cut(s)	794, 1178, 1487
SmoI	CTYRAG	3 cut(s)	794, 1178, 1487
SphI	GCATGC	2 cut(s)	753, 1107
SseBI	AGGCCT	2 cut(s)	1547, 2343
SsiI	CCGC	4 cut(s)	828, 848, 1355, 2010
SspI	AATATT	2 cut(s)	519, 2097
SspMI	CTAG	9 cut(s)	266, 486, 546, 1401, 1406, 1509, 1656, 1991, 2282
StuI	AGGCCT	2 cut(s)	1547, 2343
StyD4I	CCNGG	4 cut(s)	422, 1372, 1475, 1939
StyI	CCWWGG	4 cut(s)	228, 1655, 1964, 2013
TaaI	ACNGT	8 cut(s)	482, 887, 916, 1175, 1948, 2175, 2225, 2490
TaiI	ACGT	4 cut(s)	64, 530, 1753, 1911
TaqI	TCGA	5 cut(s)	968, 1086, 1454, 1824, 2376
TatI	WGTACW	2 cut(s)	990, 2287
TfiI	GAWTC	7 cut(s)	44, 412, 773, 926, 1210, 1445, 1537
Tru1I	TTAA	5 cut(s)	131, 455, 1517, 1716, 1875
Tru9I	TTAA	5 cut(s)	131, 455, 1517, 1716, 1875
TscAI	CASTG	7 cut(s)	589, 1248, 1306, 1357, 1860, 2423, 2478
TseFI	GTSAC	2 cut(s)	16, 1159
TseI	GCWGC	6 cut(s)	217, 380, 1039, 1097, 1100, 1708
Tsp45I	GTSAC	2 cut(s)	16, 1159
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	7 cut(s)	589, 1248, 1306, 1357, 1860, 2423, 2478
VpaK11BI	GGWCC	2 cut(s)	363, 1279
VspI	ATTAAT	1 cut(s)	1875
XapI	RAATTY	2 cut(s)	1330, 2027
XceI	RCATGY	5 cut(s)	723, 753, 1107, 1665, 2399
XmaJI	CCTAGG	1 cut(s)	1655
XmiI	GTMKAC	1 cut(s)	1005
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	9 cut(s)	266, 486, 546, 1401, 1406, 1509, 1656, 1991, 2282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.