DNA repair protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G16630 AT5G16630 AT5G16630 |
| fragaria_vesca | FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 FvH4_1g28770 |
| malus_domestica | MD17G1258300.v1.1 |
| prunus_persica | Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 Prupe.3G161000_v2.0.a1 |
| pyrus_communis | pycom17g26020 |
| rosa_chinensis | RchiOBHm_Chr3g0493161 |
| rosa_laevigata | RLG00000022722 RLG00000022723 RLG00000022724 |
| rosa_multiflora | Rmu_co8401441.1_g000001 Rmu_sc0003290.1_g000009 Rmu_sc0009488.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00391760 |
| rosa_rugosa | Rorug03G0259500 Rorug03G0259600 Rorug03G0259700 |
| rosa_samantha | Rh3AG308600 Rh3BG344700 Rh3CG341900 Rh3DG344000 |
| rosa_wichuraiana | Rw3G027140 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1486 |
| AccB1I | GGYRCC | 1 cut(s) | 49 |
| AccI | GTMKAC | 1 cut(s) | 831 |
| AccII | CGCG | 2 cut(s) | 375, 478 |
| AciI | CCGC | 4 cut(s) | 373, 418, 1310, 1858 |
| AclWI | GGATC | 4 cut(s) | 978, 1056, 1100, 1525 |
| AcsI | RAATTY | 7 cut(s) | 754, 856, 1075, 1667, 1805, 1922, 2073 |
| AcuI | CTGAAG | 3 cut(s) | 330, 402, 657 |
| AfaI | GTAC | 6 cut(s) | 462, 621, 943, 1161, 1337, 1719 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 788, 1502 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 834, 866 |
| AluBI | AGCT | 8 cut(s) | 41, 190, 265, 550, 557, 566, 1178, 2067 |
| AluI | AGCT | 8 cut(s) | 41, 190, 265, 550, 557, 566, 1178, 2067 |
| Alw26I | GTCTC | 3 cut(s) | 684, 775, 1337 |
| AlwI | GGATC | 4 cut(s) | 978, 1056, 1100, 1525 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1346 |
| AoxI | GGCC | 1 cut(s) | 1180 |
| ApeKI | GCWGC | 1 cut(s) | 349 |
| ApoI | RAATTY | 7 cut(s) | 754, 856, 1075, 1667, 1805, 1922, 2073 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 168, 921 |
| AspLEI | GCGC | 5 cut(s) | 273, 298, 349, 480, 1487 |
| AsuHPI | GGTGA | 7 cut(s) | 76, 137, 608, 1247, 1324, 1894, 2036 |
| BaeGI | GKGCMC | 1 cut(s) | 1157 |
| BanI | GGYRCC | 1 cut(s) | 49 |
| BanII | GRGCYC | 2 cut(s) | 209, 1303 |
| BauI | CACGAG | 1 cut(s) | 1566 |
| BbvI | GCAGC | 1 cut(s) | 336 |
| BccI | CCATC | 4 cut(s) | 293, 907, 1353, 1537 |
| BclI | TGATCA | 4 cut(s) | 574, 586, 604, 739 |
| BcoDI | GTCTC | 3 cut(s) | 684, 775, 1337 |
| BfaI | CTAG | 2 cut(s) | 938, 1758 |
| BfmI | CTRYAG | 1 cut(s) | 1869 |
| BisI | GCNGC | 1 cut(s) | 350 |
| BlsI | GCNGC | 1 cut(s) | 351 |
| BmiI | GGNNCC | 4 cut(s) | 51, 208, 1302, 1827 |
| BmsI | GCATC | 2 cut(s) | 295, 1258 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1792 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1429, 1461 |
| BpmI | CTGGAG | 1 cut(s) | 1604 |
| BpuEI | CTTGAG | 1 cut(s) | 287 |
| BsaAI | YACGTR | 1 cut(s) | 992 |
| BsaBI | GATNNNNATC | 1 cut(s) | 603 |
| BsaJI | CCNNGG | 1 cut(s) | 1305 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 788, 1502 |
| Bse3DI | GCAATG | 1 cut(s) | 413 |
| Bse8I | GATNNNNATC | 1 cut(s) | 603 |
| BseDI | CCNNGG | 1 cut(s) | 1305 |
| BseGI | GGATG | 6 cut(s) | 400, 876, 1036, 1249, 1548, 1669 |
| BseJI | GATNNNNATC | 1 cut(s) | 603 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 788, 1502 |
| BseMI | GCAATG | 1 cut(s) | 413 |
| BseMII | CTCAG | 4 cut(s) | 494, 516, 1149, 1353 |
| BseRI | GAGGAG | 1 cut(s) | 652 |
| BseSI | GKGCMC | 1 cut(s) | 1157 |
| BseXI | GCAGC | 1 cut(s) | 336 |
| BsgI | GTGCAG | 1 cut(s) | 918 |
| Bsh1236I | CGCG | 2 cut(s) | 375, 478 |
| BshFI | GGCC | 1 cut(s) | 1182 |
| BshNI | GGYRCC | 1 cut(s) | 49 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 788, 1502 |
| BsmAI | GTCTC | 3 cut(s) | 684, 775, 1337 |
| BsmI | GAATGC | 1 cut(s) | 1223 |
| BsnI | GGCC | 1 cut(s) | 1182 |
| Bsp1286I | GDGCHC | 3 cut(s) | 209, 1157, 1303 |
| Bsp1407I | TGTACA | 2 cut(s) | 1159, 1717 |
| BspACI | CCGC | 4 cut(s) | 373, 418, 1310, 1858 |
| BspANI | GGCC | 1 cut(s) | 1182 |
| BspCNI | CTCAG | 4 cut(s) | 495, 517, 1148, 1352 |
| BspFNI | CGCG | 2 cut(s) | 375, 478 |
| BspHI | TCATGA | 2 cut(s) | 514, 607 |
| BspLI | GGNNCC | 4 cut(s) | 51, 208, 1302, 1827 |
| BspPI | GGATC | 4 cut(s) | 978, 1056, 1100, 1525 |
| BspT107I | GGYRCC | 1 cut(s) | 49 |
| BsrDI | GCAATG | 1 cut(s) | 413 |
| BsrGI | TGTACA | 2 cut(s) | 1159, 1717 |
| BssECI | CCNNGG | 1 cut(s) | 1305 |
| BssSI | CACGAG | 1 cut(s) | 1566 |
| BssT1I | CCWWGG | 1 cut(s) | 1305 |
| Bst2BI | CACGAG | 1 cut(s) | 1566 |
| Bst4CI | ACNGT | 6 cut(s) | 736, 1159, 1335, 1514, 1657, 1722 |
| Bst6I | CTCTTC | 1 cut(s) | 306 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 2068 |
| BstAUI | TGTACA | 2 cut(s) | 1159, 1717 |
| BstBAI | YACGTR | 1 cut(s) | 992 |
| BstC8I | GCNNGC | 5 cut(s) | 184, 188, 1180, 1425, 2069 |
| BstDEI | CTNAG | 8 cut(s) | 503, 525, 926, 1114, 1135, 1339, 1380, 1764 |
| BstF5I | GGATG | 6 cut(s) | 400, 876, 1036, 1249, 1548, 1669 |
| BstFNI | CGCG | 2 cut(s) | 375, 478 |
| BstHHI | GCGC | 5 cut(s) | 273, 298, 349, 480, 1487 |
| BstMAI | GTCTC | 3 cut(s) | 684, 775, 1337 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 563, 1307, 1484, 2068 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1792 |
| BstSFI | CTRYAG | 1 cut(s) | 1869 |
| BstSLI | GKGCMC | 1 cut(s) | 1157 |
| BstUI | CGCG | 2 cut(s) | 375, 478 |
| BstV1I | GCAGC | 1 cut(s) | 336 |
| BsuRI | GGCC | 1 cut(s) | 1182 |
| BtsCI | GGATG | 6 cut(s) | 400, 876, 1036, 1249, 1548, 1669 |
| BtsI | GCAGTG | 1 cut(s) | 447 |
| BtsIMutI | CAGTG | 6 cut(s) | 447, 522, 582, 894, 958, 1155 |
| Cac8I | GCNNGC | 5 cut(s) | 184, 188, 1180, 1425, 2069 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1346 |
| CciI | TCATGA | 2 cut(s) | 514, 607 |
| CfoI | GCGC | 5 cut(s) | 273, 298, 349, 480, 1487 |
| CseI | GACGC | 2 cut(s) | 386, 1343 |
| Csp6I | GTAC | 6 cut(s) | 461, 620, 942, 1160, 1336, 1718 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1721, 1756 |
| CviAII | CATG | 9 cut(s) | 35, 157, 237, 515, 608, 1150, 1470, 1550, 1697 |
| CviQI | GTAC | 6 cut(s) | 461, 620, 942, 1160, 1336, 1718 |
| DdeI | CTNAG | 8 cut(s) | 503, 525, 926, 1114, 1135, 1339, 1380, 1764 |
| DraI | TTTAAA | 2 cut(s) | 1615, 1927 |
| Eam1104I | CTCTTC | 1 cut(s) | 306 |
| EarI | CTCTTC | 1 cut(s) | 306 |
| Eco130I | CCWWGG | 1 cut(s) | 1305 |
| Eco24I | GRGCYC | 2 cut(s) | 209, 1303 |
| Eco32I | GATATC | 1 cut(s) | 2006 |
| Eco57I | CTGAAG | 3 cut(s) | 330, 402, 657 |
| EcoRI | GAATTC | 1 cut(s) | 754 |
| EcoRV | GATATC | 1 cut(s) | 2006 |
| EcoT14I | CCWWGG | 1 cut(s) | 1305 |
| EcoT22I | ATGCAT | 1 cut(s) | 1698 |
| EcoT38I | GRGCYC | 2 cut(s) | 209, 1303 |
| ErhI | CCWWGG | 1 cut(s) | 1305 |
| FaeI | CATG | 9 cut(s) | 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 585, 617 |
| FatI | CATG | 9 cut(s) | 34, 156, 236, 514, 607, 1149, 1469, 1549, 1696 |
| FbaI | TGATCA | 4 cut(s) | 574, 586, 604, 739 |
| FblI | GTMKAC | 1 cut(s) | 831 |
| Fnu4HI | GCNGC | 1 cut(s) | 350 |
| FokI | GGATG | 6 cut(s) | 407, 883, 1043, 1236, 1555, 1676 |
| FriOI | GRGCYC | 2 cut(s) | 209, 1303 |
| Fsp4HI | GCNGC | 1 cut(s) | 350 |
| FspBI | CTAG | 2 cut(s) | 938, 1758 |
| FspI | TGCGCA | 1 cut(s) | 1486 |
| GlaI | GCGC | 5 cut(s) | 272, 297, 348, 479, 1486 |
| GluI | GCNGC | 1 cut(s) | 350 |
| GsuI | CTGGAG | 1 cut(s) | 1604 |
| HaeIII | GGCC | 1 cut(s) | 1182 |
| HgaI | GACGC | 2 cut(s) | 386, 1343 |
| HhaI | GCGC | 5 cut(s) | 273, 298, 349, 480, 1487 |
| Hin1II | CATG | 9 cut(s) | 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700 |
| Hin6I | GCGC | 5 cut(s) | 271, 296, 347, 478, 1485 |
| HinP1I | GCGC | 5 cut(s) | 271, 296, 347, 478, 1485 |
| HincII | GTYRAC | 1 cut(s) | 1331 |
| HindII | GTYRAC | 1 cut(s) | 1331 |
| HindIII | AAGCTT | 2 cut(s) | 39, 263 |
| HphI | GGTGA | 7 cut(s) | 76, 137, 608, 1247, 1324, 1894, 2036 |
| Hpy166II | GTNNAC | 4 cut(s) | 15, 832, 892, 1331 |
| Hpy188I | TCNGA | 3 cut(s) | 676, 697, 1342 |
| Hpy188III | TCNNGA | 7 cut(s) | 173, 515, 602, 608, 1523, 1568, 1583 |
| Hpy8I | GTNNAC | 4 cut(s) | 15, 832, 892, 1331 |
| Hpy99I | CGWCG | 4 cut(s) | 380, 468, 1359, 1895 |
| HpyAV | CCTTC | 8 cut(s) | 40, 670, 997, 1226, 1464, 1568, 1909, 2015 |
| HpyCH4III | ACNGT | 6 cut(s) | 736, 1159, 1335, 1514, 1657, 1722 |
| HpyCH4IV | ACGT | 2 cut(s) | 463, 991 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 563, 1307, 1484, 2068 |
| HpyF3I | CTNAG | 8 cut(s) | 503, 525, 926, 1114, 1135, 1339, 1380, 1764 |
| HpySE526I | ACGT | 2 cut(s) | 463, 991 |
| Hsp92II | CATG | 9 cut(s) | 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700 |
| HspAI | GCGC | 5 cut(s) | 271, 296, 347, 478, 1485 |
| Ksp22I | TGATCA | 4 cut(s) | 574, 586, 604, 739 |
| LmnI | GCTCC | 3 cut(s) | 212, 624, 1306 |
| LpnPI | CCDG | 7 cut(s) | 99, 681, 773, 1164, 1437, 1508, 1568 |
| Lsp1109I | GCAGC | 1 cut(s) | 336 |
| LweI | GCATC | 2 cut(s) | 295, 1258 |
| MaeI | CTAG | 2 cut(s) | 938, 1758 |
| MaeII | ACGT | 2 cut(s) | 463, 991 |
| MaeIII | GTNAC | 3 cut(s) | 987, 1117, 1882 |
| MboII | GAAGA | 8 cut(s) | 67, 323, 395, 710, 970, 1297, 1484, 1604 |
| MfeI | CAATTG | 3 cut(s) | 489, 1448, 1725 |
| MhlI | GDGCHC | 3 cut(s) | 209, 1157, 1303 |
| MlyI | GAGTC | 3 cut(s) | 252, 686, 1336 |
| MmeI | TCCRAC | 3 cut(s) | 372, 1520, 1853 |
| Mph1103I | ATGCAT | 1 cut(s) | 1698 |
| MroXI | GAANNNNTTC | 2 cut(s) | 168, 921 |
| MseI | TTAA | 8 cut(s) | 140, 360, 1509, 1614, 1847, 1926, 1991, 2000 |
| MslI | CAYNNNNRTG | 2 cut(s) | 594, 1820 |
| MunI | CAATTG | 3 cut(s) | 489, 1448, 1725 |
| Mva1269I | GAATGC | 1 cut(s) | 1223 |
| MvnI | CGCG | 2 cut(s) | 375, 478 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 563, 1307, 1484, 2068 |
| NlaIII | CATG | 9 cut(s) | 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700 |
| NlaIV | GGNNCC | 4 cut(s) | 51, 208, 1302, 1827 |
| NmuCI | GTSAC | 2 cut(s) | 1117, 1882 |
| NsbI | TGCGCA | 1 cut(s) | 1486 |
| NsiI | ATGCAT | 1 cut(s) | 1698 |
| PagI | TCATGA | 2 cut(s) | 514, 607 |
| PctI | GAATGC | 1 cut(s) | 1223 |
| PdmI | GAANNNNTTC | 2 cut(s) | 168, 921 |
| PfeI | GAWTC | 7 cut(s) | 922, 995, 1376, 1554, 1579, 1754, 1895 |
| PkrI | GCNGC | 1 cut(s) | 351 |
| PleI | GAGTC | 3 cut(s) | 251, 686, 1335 |
| PpsI | GAGTC | 3 cut(s) | 251, 686, 1335 |
| Ppu21I | YACGTR | 1 cut(s) | 992 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1792 |
| PspN4I | GGNNCC | 4 cut(s) | 51, 208, 1302, 1827 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1346 |
| RsaI | GTAC | 6 cut(s) | 462, 621, 943, 1161, 1337, 1719 |
| RsaNI | GTAC | 6 cut(s) | 461, 620, 942, 1160, 1336, 1718 |
| RseI | CAYNNNNRTG | 2 cut(s) | 594, 1820 |
| SaqAI | TTAA | 8 cut(s) | 140, 360, 1509, 1614, 1847, 1926, 1991, 2000 |
| SatI | GCNGC | 1 cut(s) | 350 |
| SchI | GAGTC | 3 cut(s) | 252, 686, 1336 |
| SduI | GDGCHC | 3 cut(s) | 209, 1157, 1303 |
| SfaNI | GCATC | 2 cut(s) | 295, 1258 |
| SfcI | CTRYAG | 1 cut(s) | 1869 |
| SmiI | ATTTAAAT | 1 cut(s) | 1927 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 594, 1820 |
| SmlI | CTYRAG | 1 cut(s) | 266 |
| SmoI | CTYRAG | 1 cut(s) | 266 |
| SsiI | CCGC | 4 cut(s) | 373, 418, 1310, 1858 |
| SspI | AATATT | 3 cut(s) | 1016, 1610, 1931 |
| SspMI | CTAG | 2 cut(s) | 938, 1758 |
| StyI | CCWWGG | 1 cut(s) | 1305 |
| SwaI | ATTTAAAT | 1 cut(s) | 1927 |
| TaaI | ACNGT | 6 cut(s) | 736, 1159, 1335, 1514, 1657, 1722 |
| TaiI | ACGT | 2 cut(s) | 466, 994 |
| TaqI | TCGA | 6 cut(s) | 300, 499, 861, 1357, 1659, 1890 |
| TatI | WGTACW | 3 cut(s) | 1159, 1335, 1717 |
| TfiI | GAWTC | 7 cut(s) | 922, 995, 1376, 1554, 1579, 1754, 1895 |
| Tru1I | TTAA | 8 cut(s) | 140, 360, 1509, 1614, 1847, 1926, 1991, 2000 |
| Tru9I | TTAA | 8 cut(s) | 140, 360, 1509, 1614, 1847, 1926, 1991, 2000 |
| TscAI | CASTG | 6 cut(s) | 454, 529, 589, 894, 958, 1162 |
| TseFI | GTSAC | 2 cut(s) | 1117, 1882 |
| TseI | GCWGC | 1 cut(s) | 349 |
| Tsp45I | GTSAC | 2 cut(s) | 1117, 1882 |
| TspDTI | ATGAA | 7 cut(s) | 51, 531, 652, 855, 893, 1446, 1680 |
| TspGWI | ACGGA | 1 cut(s) | 637 |
| TspRI | CASTG | 6 cut(s) | 454, 529, 589, 894, 958, 1162 |
| XapI | RAATTY | 7 cut(s) | 754, 856, 1075, 1667, 1805, 1922, 2073 |
| XmiI | GTMKAC | 1 cut(s) | 831 |
| XmnI | GAANNNNTTC | 2 cut(s) | 168, 921 |
| XspI | CTAG | 2 cut(s) | 938, 1758 |
| Zsp2I | ATGCAT | 1 cut(s) | 1698 |