Rorug03G0259700

DNA repair protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
24978600 .. 24981315
2716 bp
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UTR
Exon/CDS
Intron
Rorug03G0259700.1

Sequence Viewer

Length: 2091 bp
ATGTTGTCTTCGTTTACTTTAGTAATCAAAACGCATGAAGCTTGGAAGGTGCCATATATAAGCCTAATTCGTATCTTCAAAATCACCAAAATCATCATACTTGTAAGACAAACAGGAAAAACAAAATCCACCTTTCCTTTAACTCACCTCAACAACATGGCTGAACTTGTTCTTGATTTGGCAAGCAAGCTAACAGAGAGGTTGGGCTCCCTTGCTTACAATGAGATTTGCTTGGCATGGGGAGTCAAAACTGATCTGCAAAAGCTTGAGCGCACCATATCCACCATCAAAAATGCGCTCGATGATGCTGAAGAGAAGCAAGTGCATAACAAGGGGCTACAAAGTGCGCTGCAACAACTTAAAGATGTGTTCCGCGACGCTGAAGATGTGTTGGATGAGTTTGAGTGCGAAGCATTGCGGAGGCAAGTTGTAAAAACATATTACAACACTGCGAGAAAGGTACGTCGTTTCTTTTCGCGCTCTAATCCAATTGCTTTTCGACTGAGAGTAGGTCATGAAATCACTGAGATAAGGGAGAGATTAGATGAGCTTATAGCTAATAAAGCTATATTTGATCATCTCACTGATCATCAAGGTGATCTTGATCATGATAGAAATGTACGGAGCGTGAATGTGAGGAGGGAGAATATGACCCACTCCTTCATTCCTGCTTCAGAGGTTATTGGCAGAGACTCTGACAAAGAAGTGATTGTTGATCTTCTAATGCCAAAAACTGTTGATCAACAAAGTGGGAATTCCCAGAGGATTGTCTCTATTATTCCCATAGTTGGTATAGGAGGGTTGGGTAAGACCACACTTGCCAAGTTGGTCTACAATGATGAAAGGGTCGTTGGGAATTTCGATTTGAGGATGTGGGTGTATGTGTCAGTGGACTTTGATATTCATAGGTTGATGGAAAAGATTCTTAGTTCTGCACTAGGTACAGAAATCAGTGAGAAGATGTCTGTGGATCAATTACAAGCAAAGTTACGTGAATCTTTGAAGGATAAGAAATATTTGCTTGTCTTGGATGATGTATGGAATGAGGATCGTATTCAATGGAGTGAGTTGAGAAATTTGTTGATAGACGGGATCAAATTAGGAAGTAAAATCTTAGTGACAACCCGTAATCACTCAGTTGCTTCAATCATGGGCACTGTACAACCATACAATTTAGCTGGCCTCTCTTATGAGCATTGTTTGTCATTGTTTAGAAAATCTGCATTCAAGGAAGGTGATGAGAAACAGCATCCACACCTCTTTGAAATTGGAAAAGAGATTGTGAAGAAGTGTGGAGGGGCTCCCTTGGCGGTGAGAACTTTAGGGAGTCAACTGTACTCAGAGACTGATGAGCGTCGATGGAAATTAGTAAGAGATTCTAAGATATGGGAATTGGAGAGAGAGGGTAGTGGTCATATCTTGCCTGCTTTGAGATTGAGTTATACTCAATTGCCTTCATACTTGAAACCATGCCTTGCTTATTGCGCATATCTTCCAAAGAAAGGACTTAACTGTAATTCTCTGGAATTGATCCATTGTTGGATGGCTCATGGAATCCTTCAATCTCGTGATAATGAGAATCTGGAGGTGGAAGAAGTGGGAGAGCAATATTTTAAAGAATTATGGGCGAGATCGTTCTTTGAAAATGTGGAAACTGTCGAGGATGAATTTGATCTCTACTACAAGTTTTCTATGCATGATCTTATCTATGACCTTGTACAGTCAATTGGGCAAGATGAGTGGTCTGTTGTGGATTCTAGCACTAAGGACATCGTTGAAAATGTTAGACACTTGTCATTTTTGGAATTTGACAACATACTAATGGTTCCAACGATATTGCAAAAGTTAAAAAAAGTGCGGAGTATAACTATAGTGAAAGAGGTGACTATCGACGAATCCTTCCTTGATACTTGCTTTTCAAAATTTAAATATTTGAGGGTGCTTCGCTTCGTTGAATTATCATTGGAGTTGCCAAGTTCCATTGGTGCGTTAAAGCATTTAAGATATCTGTATTTAGAGGAAGGTGAAATGACAAAACTCCCCAATGCCATTTGCAAGTTGCAGAGCTTGCAAATTCTATTTTTTTTCTAA

Protein Analysis

696

Amino Acids

80.33

Weight (kDa)

6.48

Isoelectric Point (pI)

42.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rx_N PF18052 62 - 149 4.4e-23 Rx N-terminal domain
NB-ARC PF00931 254 - 411 9.2e-35 NB-ARC domain
WHD_DRP PF23559 502 - 573 1.7e-16 Disease resistance protein Winged helix domain
LRR_14 PF23598 618 - 693 3.2e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1486
AccB1I GGYRCC 1 cut(s) 49
AccI GTMKAC 1 cut(s) 831
AccII CGCG 2 cut(s) 375, 478
AciI CCGC 4 cut(s) 373, 418, 1310, 1858
AclWI GGATC 4 cut(s) 978, 1056, 1100, 1525
AcsI RAATTY 7 cut(s) 754, 856, 1075, 1667, 1805, 1922, 2073
AcuI CTGAAG 3 cut(s) 330, 402, 657
AfaI GTAC 6 cut(s) 462, 621, 943, 1161, 1337, 1719
AfiI CCNNNNNNNGG 2 cut(s) 788, 1502
AjuI GAANNNNNNNTTGG 2 cut(s) 834, 866
AluBI AGCT 8 cut(s) 41, 190, 265, 550, 557, 566, 1178, 2067
AluI AGCT 8 cut(s) 41, 190, 265, 550, 557, 566, 1178, 2067
Alw26I GTCTC 3 cut(s) 684, 775, 1337
AlwI GGATC 4 cut(s) 978, 1056, 1100, 1525
AlwNI CAGNNNCTG 1 cut(s) 1346
AoxI GGCC 1 cut(s) 1180
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 7 cut(s) 754, 856, 1075, 1667, 1805, 1922, 2073
Asp700I GAANNNNTTC 2 cut(s) 168, 921
AspLEI GCGC 5 cut(s) 273, 298, 349, 480, 1487
AsuHPI GGTGA 7 cut(s) 76, 137, 608, 1247, 1324, 1894, 2036
BaeGI GKGCMC 1 cut(s) 1157
BanI GGYRCC 1 cut(s) 49
BanII GRGCYC 2 cut(s) 209, 1303
BauI CACGAG 1 cut(s) 1566
BbvI GCAGC 1 cut(s) 336
BccI CCATC 4 cut(s) 293, 907, 1353, 1537
BclI TGATCA 4 cut(s) 574, 586, 604, 739
BcoDI GTCTC 3 cut(s) 684, 775, 1337
BfaI CTAG 2 cut(s) 938, 1758
BfmI CTRYAG 1 cut(s) 1869
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
BmiI GGNNCC 4 cut(s) 51, 208, 1302, 1827
BmsI GCATC 2 cut(s) 295, 1258
BoxI GACNNNNGTC 1 cut(s) 1792
BplI GAGNNNNNCTC 2 cut(s) 1429, 1461
BpmI CTGGAG 1 cut(s) 1604
BpuEI CTTGAG 1 cut(s) 287
BsaAI YACGTR 1 cut(s) 992
BsaBI GATNNNNATC 1 cut(s) 603
BsaJI CCNNGG 1 cut(s) 1305
Bsc4I CCNNNNNNNGG 2 cut(s) 788, 1502
Bse3DI GCAATG 1 cut(s) 413
Bse8I GATNNNNATC 1 cut(s) 603
BseDI CCNNGG 1 cut(s) 1305
BseGI GGATG 6 cut(s) 400, 876, 1036, 1249, 1548, 1669
BseJI GATNNNNATC 1 cut(s) 603
BseLI CCNNNNNNNGG 2 cut(s) 788, 1502
BseMI GCAATG 1 cut(s) 413
BseMII CTCAG 4 cut(s) 494, 516, 1149, 1353
BseRI GAGGAG 1 cut(s) 652
BseSI GKGCMC 1 cut(s) 1157
BseXI GCAGC 1 cut(s) 336
BsgI GTGCAG 1 cut(s) 918
Bsh1236I CGCG 2 cut(s) 375, 478
BshFI GGCC 1 cut(s) 1182
BshNI GGYRCC 1 cut(s) 49
BslI CCNNNNNNNGG 2 cut(s) 788, 1502
BsmAI GTCTC 3 cut(s) 684, 775, 1337
BsmI GAATGC 1 cut(s) 1223
BsnI GGCC 1 cut(s) 1182
Bsp1286I GDGCHC 3 cut(s) 209, 1157, 1303
Bsp1407I TGTACA 2 cut(s) 1159, 1717
BspACI CCGC 4 cut(s) 373, 418, 1310, 1858
BspANI GGCC 1 cut(s) 1182
BspCNI CTCAG 4 cut(s) 495, 517, 1148, 1352
BspFNI CGCG 2 cut(s) 375, 478
BspHI TCATGA 2 cut(s) 514, 607
BspLI GGNNCC 4 cut(s) 51, 208, 1302, 1827
BspPI GGATC 4 cut(s) 978, 1056, 1100, 1525
BspT107I GGYRCC 1 cut(s) 49
BsrDI GCAATG 1 cut(s) 413
BsrGI TGTACA 2 cut(s) 1159, 1717
BssECI CCNNGG 1 cut(s) 1305
BssSI CACGAG 1 cut(s) 1566
BssT1I CCWWGG 1 cut(s) 1305
Bst2BI CACGAG 1 cut(s) 1566
Bst4CI ACNGT 6 cut(s) 736, 1159, 1335, 1514, 1657, 1722
Bst6I CTCTTC 1 cut(s) 306
BstAPI GCANNNNNTGC 1 cut(s) 2068
BstAUI TGTACA 2 cut(s) 1159, 1717
BstBAI YACGTR 1 cut(s) 992
BstC8I GCNNGC 5 cut(s) 184, 188, 1180, 1425, 2069
BstDEI CTNAG 8 cut(s) 503, 525, 926, 1114, 1135, 1339, 1380, 1764
BstF5I GGATG 6 cut(s) 400, 876, 1036, 1249, 1548, 1669
BstFNI CGCG 2 cut(s) 375, 478
BstHHI GCGC 5 cut(s) 273, 298, 349, 480, 1487
BstMAI GTCTC 3 cut(s) 684, 775, 1337
BstMWI GCNNNNNNNGC 4 cut(s) 563, 1307, 1484, 2068
BstPAI GACNNNNGTC 1 cut(s) 1792
BstSFI CTRYAG 1 cut(s) 1869
BstSLI GKGCMC 1 cut(s) 1157
BstUI CGCG 2 cut(s) 375, 478
BstV1I GCAGC 1 cut(s) 336
BsuRI GGCC 1 cut(s) 1182
BtsCI GGATG 6 cut(s) 400, 876, 1036, 1249, 1548, 1669
BtsI GCAGTG 1 cut(s) 447
BtsIMutI CAGTG 6 cut(s) 447, 522, 582, 894, 958, 1155
Cac8I GCNNGC 5 cut(s) 184, 188, 1180, 1425, 2069
CaiI CAGNNNCTG 1 cut(s) 1346
CciI TCATGA 2 cut(s) 514, 607
CfoI GCGC 5 cut(s) 273, 298, 349, 480, 1487
CseI GACGC 2 cut(s) 386, 1343
Csp6I GTAC 6 cut(s) 461, 620, 942, 1160, 1336, 1718
CspCI CAANNNNNGTGG 2 cut(s) 1721, 1756
CviAII CATG 9 cut(s) 35, 157, 237, 515, 608, 1150, 1470, 1550, 1697
CviQI GTAC 6 cut(s) 461, 620, 942, 1160, 1336, 1718
DdeI CTNAG 8 cut(s) 503, 525, 926, 1114, 1135, 1339, 1380, 1764
DraI TTTAAA 2 cut(s) 1615, 1927
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco130I CCWWGG 1 cut(s) 1305
Eco24I GRGCYC 2 cut(s) 209, 1303
Eco32I GATATC 1 cut(s) 2006
Eco57I CTGAAG 3 cut(s) 330, 402, 657
EcoRI GAATTC 1 cut(s) 754
EcoRV GATATC 1 cut(s) 2006
EcoT14I CCWWGG 1 cut(s) 1305
EcoT22I ATGCAT 1 cut(s) 1698
EcoT38I GRGCYC 2 cut(s) 209, 1303
ErhI CCWWGG 1 cut(s) 1305
FaeI CATG 9 cut(s) 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700
FalI AAGNNNNNCTT 2 cut(s) 585, 617
FatI CATG 9 cut(s) 34, 156, 236, 514, 607, 1149, 1469, 1549, 1696
FbaI TGATCA 4 cut(s) 574, 586, 604, 739
FblI GTMKAC 1 cut(s) 831
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 6 cut(s) 407, 883, 1043, 1236, 1555, 1676
FriOI GRGCYC 2 cut(s) 209, 1303
Fsp4HI GCNGC 1 cut(s) 350
FspBI CTAG 2 cut(s) 938, 1758
FspI TGCGCA 1 cut(s) 1486
GlaI GCGC 5 cut(s) 272, 297, 348, 479, 1486
GluI GCNGC 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 1604
HaeIII GGCC 1 cut(s) 1182
HgaI GACGC 2 cut(s) 386, 1343
HhaI GCGC 5 cut(s) 273, 298, 349, 480, 1487
Hin1II CATG 9 cut(s) 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700
Hin6I GCGC 5 cut(s) 271, 296, 347, 478, 1485
HinP1I GCGC 5 cut(s) 271, 296, 347, 478, 1485
HincII GTYRAC 1 cut(s) 1331
HindII GTYRAC 1 cut(s) 1331
HindIII AAGCTT 2 cut(s) 39, 263
HphI GGTGA 7 cut(s) 76, 137, 608, 1247, 1324, 1894, 2036
Hpy166II GTNNAC 4 cut(s) 15, 832, 892, 1331
Hpy188I TCNGA 3 cut(s) 676, 697, 1342
Hpy188III TCNNGA 7 cut(s) 173, 515, 602, 608, 1523, 1568, 1583
Hpy8I GTNNAC 4 cut(s) 15, 832, 892, 1331
Hpy99I CGWCG 4 cut(s) 380, 468, 1359, 1895
HpyAV CCTTC 8 cut(s) 40, 670, 997, 1226, 1464, 1568, 1909, 2015
HpyCH4III ACNGT 6 cut(s) 736, 1159, 1335, 1514, 1657, 1722
HpyCH4IV ACGT 2 cut(s) 463, 991
HpyF10VI GCNNNNNNNGC 4 cut(s) 563, 1307, 1484, 2068
HpyF3I CTNAG 8 cut(s) 503, 525, 926, 1114, 1135, 1339, 1380, 1764
HpySE526I ACGT 2 cut(s) 463, 991
Hsp92II CATG 9 cut(s) 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700
HspAI GCGC 5 cut(s) 271, 296, 347, 478, 1485
Ksp22I TGATCA 4 cut(s) 574, 586, 604, 739
LmnI GCTCC 3 cut(s) 212, 624, 1306
LpnPI CCDG 7 cut(s) 99, 681, 773, 1164, 1437, 1508, 1568
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 2 cut(s) 295, 1258
MaeI CTAG 2 cut(s) 938, 1758
MaeII ACGT 2 cut(s) 463, 991
MaeIII GTNAC 3 cut(s) 987, 1117, 1882
MboII GAAGA 8 cut(s) 67, 323, 395, 710, 970, 1297, 1484, 1604
MfeI CAATTG 3 cut(s) 489, 1448, 1725
MhlI GDGCHC 3 cut(s) 209, 1157, 1303
MlyI GAGTC 3 cut(s) 252, 686, 1336
MmeI TCCRAC 3 cut(s) 372, 1520, 1853
Mph1103I ATGCAT 1 cut(s) 1698
MroXI GAANNNNTTC 2 cut(s) 168, 921
MseI TTAA 8 cut(s) 140, 360, 1509, 1614, 1847, 1926, 1991, 2000
MslI CAYNNNNRTG 2 cut(s) 594, 1820
MunI CAATTG 3 cut(s) 489, 1448, 1725
Mva1269I GAATGC 1 cut(s) 1223
MvnI CGCG 2 cut(s) 375, 478
MwoI GCNNNNNNNGC 4 cut(s) 563, 1307, 1484, 2068
NlaIII CATG 9 cut(s) 38, 160, 240, 518, 611, 1153, 1473, 1553, 1700
NlaIV GGNNCC 4 cut(s) 51, 208, 1302, 1827
NmuCI GTSAC 2 cut(s) 1117, 1882
NsbI TGCGCA 1 cut(s) 1486
NsiI ATGCAT 1 cut(s) 1698
PagI TCATGA 2 cut(s) 514, 607
PctI GAATGC 1 cut(s) 1223
PdmI GAANNNNTTC 2 cut(s) 168, 921
PfeI GAWTC 7 cut(s) 922, 995, 1376, 1554, 1579, 1754, 1895
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 3 cut(s) 251, 686, 1335
PpsI GAGTC 3 cut(s) 251, 686, 1335
Ppu21I YACGTR 1 cut(s) 992
PshAI GACNNNNGTC 1 cut(s) 1792
PspN4I GGNNCC 4 cut(s) 51, 208, 1302, 1827
PstNI CAGNNNCTG 1 cut(s) 1346
RsaI GTAC 6 cut(s) 462, 621, 943, 1161, 1337, 1719
RsaNI GTAC 6 cut(s) 461, 620, 942, 1160, 1336, 1718
RseI CAYNNNNRTG 2 cut(s) 594, 1820
SaqAI TTAA 8 cut(s) 140, 360, 1509, 1614, 1847, 1926, 1991, 2000
SatI GCNGC 1 cut(s) 350
SchI GAGTC 3 cut(s) 252, 686, 1336
SduI GDGCHC 3 cut(s) 209, 1157, 1303
SfaNI GCATC 2 cut(s) 295, 1258
SfcI CTRYAG 1 cut(s) 1869
SmiI ATTTAAAT 1 cut(s) 1927
SmiMI CAYNNNNRTG 2 cut(s) 594, 1820
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
SsiI CCGC 4 cut(s) 373, 418, 1310, 1858
SspI AATATT 3 cut(s) 1016, 1610, 1931
SspMI CTAG 2 cut(s) 938, 1758
StyI CCWWGG 1 cut(s) 1305
SwaI ATTTAAAT 1 cut(s) 1927
TaaI ACNGT 6 cut(s) 736, 1159, 1335, 1514, 1657, 1722
TaiI ACGT 2 cut(s) 466, 994
TaqI TCGA 6 cut(s) 300, 499, 861, 1357, 1659, 1890
TatI WGTACW 3 cut(s) 1159, 1335, 1717
TfiI GAWTC 7 cut(s) 922, 995, 1376, 1554, 1579, 1754, 1895
Tru1I TTAA 8 cut(s) 140, 360, 1509, 1614, 1847, 1926, 1991, 2000
Tru9I TTAA 8 cut(s) 140, 360, 1509, 1614, 1847, 1926, 1991, 2000
TscAI CASTG 6 cut(s) 454, 529, 589, 894, 958, 1162
TseFI GTSAC 2 cut(s) 1117, 1882
TseI GCWGC 1 cut(s) 349
Tsp45I GTSAC 2 cut(s) 1117, 1882
TspDTI ATGAA 7 cut(s) 51, 531, 652, 855, 893, 1446, 1680
TspGWI ACGGA 1 cut(s) 637
TspRI CASTG 6 cut(s) 454, 529, 589, 894, 958, 1162
XapI RAATTY 7 cut(s) 754, 856, 1075, 1667, 1805, 1922, 2073
XmiI GTMKAC 1 cut(s) 831
XmnI GAANNNNTTC 2 cut(s) 168, 921
XspI CTAG 2 cut(s) 938, 1758
Zsp2I ATGCAT 1 cut(s) 1698
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.