Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

24955993 .. 24958482

Gene Structure 2490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGCATCAAAAGTAGTTCGTTTGATTCAGGATCAGAACCTCAATGTTCACTCTGATGGAGCTTCAGTTGCGGGAAAGGGTGATGCATTCAAATCAACCAAGAAAGGGGGACTTGGTGGAAGGAAACCTCTAGGAGATCTATCAAATAGGGGAAAGCCTGATTTTACCAAGGCATCAAAAAAGCCTGCTCTCACCAATGTTCCTGAAATCATTGCTGATGCAAGCAATAAGAAAGTCCTTTCTAAAGCTTCGGATAAAGTGCAGACTCGTGGCAGCCGCAAGGCACTACCTGATGTGTCTAACACAGTGAAACCACCCCTTCAGAAGACTTCAAGTGCTGTGGCAGAGGAATCCTCTTGTGATTTTGAGAAGGAAGGTTTCCTGCACGACCATAAACAGTGCATCAAAGCAATGAGAGAGGCTACCCACATGGATCAAATGGATATATTTAGGATGATACATGGACCAAATCCATTCAAGATTCTTTCATCTCCACCAAAAGCTTCTCAGTTTACCAAAGTTGAGGAGGAGAGTCTGACCATGTACTTGGAAGAGATACCTGAGGATCAATCCACCTTGCTGCCTATCAAGCAGGACTCCTCCGTCTCCTCACTTCCTTGCAATTCTCCACCTCTATCACCAGTACGCTATACCGATTCCCCTTGGATTTGGGAGGAGTGTGATTTTCAGGTGATGGGAACACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

235

Amino Acids

25.74

Weight (kDa)

8.26

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	602
AciI	CCGC	2 cut(s)	71, 277
AclWI	GGATC	3 cut(s)	39, 441, 573
AcuI	CTGAAG	2 cut(s)	48, 305
AfaI	GTAC	2 cut(s)	545, 645
AfiI	CCNNNNNNNGG	1 cut(s)	105
AgsI	TTSAA	3 cut(s)	91, 333, 478
AluBI	AGCT	3 cut(s)	62, 248, 503
AluI	AGCT	3 cut(s)	62, 248, 503
Alw26I	GTCTC	1 cut(s)	610
AlwI	GGATC	3 cut(s)	39, 441, 573
ApeKI	GCWGC	2 cut(s)	273, 580
AspS9I	GGNCC	1 cut(s)	464
AsuHPI	GGTGA	4 cut(s)	92, 184, 630, 703
AvaII	GGWCC	1 cut(s)	464
AxyI	CCTNAGG	1 cut(s)	561
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	332
BbvI	GCAGC	2 cut(s)	285, 567
BccI	CCATC	2 cut(s)	50, 688
BcoDI	GTCTC	1 cut(s)	610
BfaI	CTAG	1 cut(s)	131
BglII	AGATCT	1 cut(s)	136
BisI	GCNGC	3 cut(s)	274, 277, 581
BlsI	GCNGC	3 cut(s)	275, 278, 582
Bme18I	GGWCC	1 cut(s)	464
BmgT120I	GGNCC	1 cut(s)	464
BmsI	GCATC	5 cut(s)	14, 73, 182, 208, 411
BpiI	GAAGAC	1 cut(s)	332
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BsaJI	CCNNGG	2 cut(s)	168, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	51, 81
Bsc4I	CCNNNNNNNGG	1 cut(s)	105
Bse1I	ACTGG	1 cut(s)	641
Bse21I	CCTNAGG	1 cut(s)	561
Bse3DI	GCAATG	2 cut(s)	210, 417
BseDI	CCNNGG	2 cut(s)	168, 662
BseGI	GGATG	1 cut(s)	459
BseLI	CCNNNNNNNGG	1 cut(s)	105
BseMI	GCAATG	2 cut(s)	210, 417
BseMII	CTCAG	2 cut(s)	521, 552
BseNI	ACTGG	1 cut(s)	641
BseRI	GAGGAG	5 cut(s)	539, 542, 589, 598, 689
BseXI	GCAGC	2 cut(s)	285, 567
BsgI	GTGCAG	2 cut(s)	281, 368
BslFI	GGGAC	1 cut(s)	123
BslI	CCNNNNNNNGG	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	610
BsmBI	CGTCTC	1 cut(s)	610
BsmFI	GGGAC	1 cut(s)	123
BsmI	GAATGC	1 cut(s)	86
Bsp143I	GATC	4 cut(s)	31, 136, 433, 565
BspACI	CCGC	2 cut(s)	71, 277
BspCNI	CTCAG	2 cut(s)	520, 553
BspPI	GGATC	3 cut(s)	39, 441, 573
BsrDI	GCAATG	2 cut(s)	210, 417
BsrI	ACTGG	1 cut(s)	641
BssECI	CCNNGG	2 cut(s)	168, 662
BssMI	GATC	4 cut(s)	31, 136, 433, 565
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	2 cut(s)	168, 662
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	307, 399
Bst6I	CTCTTC	1 cut(s)	546
BstC8I	GCNNGC	2 cut(s)	186, 223
BstDEI	CTNAG	2 cut(s)	507, 561
BstF5I	GGATG	1 cut(s)	459
BstKTI	GATC	4 cut(s)	34, 139, 436, 568
BstMAI	GTCTC	1 cut(s)	610
BstMBI	GATC	4 cut(s)	31, 136, 433, 565
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 589
BstV1I	GCAGC	2 cut(s)	285, 567
BstV2I	GAAGAC	1 cut(s)	332
BstX2I	RGATCY	1 cut(s)	136
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	136
Bsu36I	CCTNAGG	1 cut(s)	561
BtsCI	GGATG	1 cut(s)	459
BtsIMutI	CAGTG	2 cut(s)	312, 404
Cac8I	GCNNGC	2 cut(s)	186, 223
Cfr13I	GGNCC	1 cut(s)	464
Csp6I	GTAC	2 cut(s)	544, 644
CspCI	CAANNNNNGTGG	2 cut(s)	321, 356
CviAII	CATG	3 cut(s)	430, 461, 541
CviJI	RGCY	7 cut(s)	62, 157, 184, 248, 276, 422, 503
CviKI_1	RGCY	7 cut(s)	62, 157, 184, 248, 276, 422, 503
CviQI	GTAC	2 cut(s)	544, 644
DdeI	CTNAG	2 cut(s)	507, 561
DpnI	GATC	4 cut(s)	33, 138, 435, 567
DpnII	GATC	4 cut(s)	31, 136, 433, 565
DrdI	GACNNNNNNGTC	1 cut(s)	602
DseDI	GACNNNNNNGTC	1 cut(s)	602
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	2 cut(s)	168, 662
Eco47I	GGWCC	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	48, 305
Eco81I	CCTNAGG	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	168, 662
EcoT22I	ATGCAT	1 cut(s)	88
ErhI	CCWWGG	2 cut(s)	168, 662
Esp3I	CGTCTC	1 cut(s)	610
FaeI	CATG	3 cut(s)	433, 464, 544
FaiI	YATR	7 cut(s)	393, 431, 446, 462, 542, 651, 706
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FaqI	GGGAC	1 cut(s)	123
FatI	CATG	3 cut(s)	429, 460, 540
FauI	CCCGC	1 cut(s)	64
Fnu4HI	GCNGC	3 cut(s)	274, 277, 581
FokI	GGATG	1 cut(s)	466
Fsp4HI	GCNGC	3 cut(s)	274, 277, 581
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	3 cut(s)	274, 277, 581
Hin1II	CATG	3 cut(s)	433, 464, 544
HindIII	AAGCTT	2 cut(s)	246, 501
HinfI	GANTC	7 cut(s)	25, 265, 350, 481, 532, 596, 656
HphI	GGTGA	4 cut(s)	92, 184, 630, 703
Hpy166II	GTNNAC	2 cut(s)	49, 513
Hpy188I	TCNGA	5 cut(s)	36, 55, 253, 324, 537
Hpy188III	TCNNGA	3 cut(s)	29, 203, 478
Hpy8I	GTNNAC	2 cut(s)	49, 513
HpyAV	CCTTC	4 cut(s)	114, 329, 364, 368
HpyCH4III	ACNGT	2 cut(s)	307, 399
HpyCH4V	TGCA	6 cut(s)	86, 221, 262, 385, 402, 621
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 589
HpyF3I	CTNAG	2 cut(s)	507, 561
Hsp92II	CATG	3 cut(s)	433, 464, 544
Kzo9I	GATC	4 cut(s)	31, 136, 433, 565
LmnI	GCTCC	1 cut(s)	59
Lsp1109I	GCAGC	2 cut(s)	285, 567
LweI	GCATC	5 cut(s)	14, 73, 182, 208, 411
MaeI	CTAG	1 cut(s)	131
MalI	GATC	4 cut(s)	33, 138, 435, 567
MboI	GATC	4 cut(s)	31, 136, 433, 565
MboII	GAAGA	2 cut(s)	337, 563
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	1 cut(s)	622
MlyI	GAGTC	3 cut(s)	259, 541, 590
Mph1103I	ATGCAT	1 cut(s)	88
MslI	CAYNNNNRTG	1 cut(s)	54
Mva1269I	GAATGC	1 cut(s)	86
MwoI	GCNNNNNNNGC	2 cut(s)	68, 589
NdeII	GATC	4 cut(s)	31, 136, 433, 565
NlaIII	CATG	3 cut(s)	433, 464, 544
NsiI	ATGCAT	1 cut(s)	88
PctI	GAATGC	1 cut(s)	86
PfeI	GAWTC	4 cut(s)	25, 350, 481, 656
PkrI	GCNGC	3 cut(s)	275, 278, 582
PleI	GAGTC	3 cut(s)	259, 540, 590
PpsI	GAGTC	3 cut(s)	259, 540, 590
PspPI	GGNCC	1 cut(s)	464
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	545, 645
RsaNI	GTAC	2 cut(s)	544, 644
RseI	CAYNNNNRTG	1 cut(s)	54
SatI	GCNGC	3 cut(s)	274, 277, 581
Sau3AI	GATC	4 cut(s)	31, 136, 433, 565
Sau96I	GGNCC	1 cut(s)	464
SchI	GAGTC	3 cut(s)	259, 541, 590
SfaNI	GCATC	5 cut(s)	14, 73, 182, 208, 411
SinI	GGWCC	1 cut(s)	464
SmiMI	CAYNNNNRTG	1 cut(s)	54
Sse9I	AATT	1 cut(s)	622
SsiI	CCGC	2 cut(s)	71, 277
SspMI	CTAG	1 cut(s)	131
StyI	CCWWGG	2 cut(s)	168, 662
TaaI	ACNGT	2 cut(s)	307, 399
TasI	AATT	1 cut(s)	622
TatI	WGTACW	1 cut(s)	543
TauI	GCSGC	1 cut(s)	279
TfiI	GAWTC	4 cut(s)	25, 350, 481, 656
TscAI	CASTG	2 cut(s)	312, 404
TseI	GCWGC	2 cut(s)	273, 580
TspDTI	ATGAA	1 cut(s)	477
TspGWI	ACGGA	1 cut(s)	592
TspRI	CASTG	2 cut(s)	312, 404
VpaK11BI	GGWCC	1 cut(s)	464
XspI	CTAG	1 cut(s)	131
Zsp2I	ATGCAT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.