Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

45046113 .. 45048221

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG241300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGCGGCGATTGAGGCGCTTAATGAGAGCGAGGGGTCGAACAAGACCTCAATCGCGCAGCAAATCGAGTCCACCTACGGCGATCTGCCGCCGGCTCACGCCACGCTTCTGGCGCACCACCTCAACAAGATGAAGCAGAGCGGCGAGCTCGTTTTCGTCAAGAACAACTACATGAAGCCCGACCCCAACGCTCCGCCCAAGCGGGGCCGTGGCCGCCCGCCCAAGCCCAAGGTCCCGGCGCCGGAAGGAGCCGCCGTGGTCTCCTCGCCTCCGAGGCCACGTGGCAGACCTCCCAAGCCTAGGGATCCGTTTTTCCCGCTCCCAATTGCCAAGAGCTCGACATCCACCGGGTCCGACAGGCCACGTTGCCGCCCTCCGAAGAAGGCCAAGACAAGTCCGACCTCGACTCCGGCTTCGGCTCCGGCGAGTGGTGCCCCTAGAGGTAGAGGCAGGCCACCGAAAGTCAAGCCCTCCGTAGCTCCGAACGCTGAAGAGAATGAATACGAAGAAGGTGTGGTGCCAGAGATGAAATTTGTGTTGACCAAGGAAGACGTAACAGAGACTGGAGCACCAGCTACTCTGTTGGTTTTCAATAATGAAGTTGGCTTTTCCAGGGAGAACATGGATTCCATTTGCGGCATATTCCATTCTACAAAGATGGAAAAGAGACAGCAGAGGTTAATTGAAGAGAATGGTACCGGCCTCTACAACATTGCTATTTCTGGTCTCAATGATGCCTTGTGGGAAAGAATTCATTGCCTGTCTCAGATGTTCTATTGCAAATTGAATATGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

265

Amino Acids

28.87

Weight (kDa)

9.49

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	695
AccB1I	GGYRCC	4 cut(s)	238, 431, 517, 695
AccBSI	CCGCTC	2 cut(s)	141, 319
AccII	CGCG	1 cut(s)	56
AclWI	GGATC	2 cut(s)	299, 312
AcoI	YGGCCR	1 cut(s)	211
AcsI	RAATTY	2 cut(s)	530, 750
AcuI	CTGAAG	1 cut(s)	510
AcvI	CACGTG	1 cut(s)	281
AcyI	GRCGYC	1 cut(s)	239
AfaI	GTAC	1 cut(s)	697
AfiI	CCNNNNNNNGG	4 cut(s)	203, 241, 300, 428
AgsI	TTSAA	3 cut(s)	592, 686, 787
AjnI	CCWGG	1 cut(s)	611
AloI	GAACNNNNNNTCC	2 cut(s)	611, 643
AluBI	AGCT	4 cut(s)	148, 336, 479, 575
AluI	AGCT	4 cut(s)	148, 336, 479, 575
Alw21I	GWGCWC	3 cut(s)	150, 338, 571
Alw26I	GTCTC	5 cut(s)	265, 554, 661, 731, 768
AlwI	GGATC	2 cut(s)	299, 312
AlwNI	CAGNNNCTG	1 cut(s)	563
AoxI	GGCC	7 cut(s)	205, 211, 275, 359, 384, 452, 700
ApeKI	GCWGC	1 cut(s)	58
ApoI	RAATTY	2 cut(s)	530, 750
ArsI	GACNNNNNNTTYG	2 cut(s)	397, 429
Asp700I	GAANNNNTTC	1 cut(s)	750
Asp718I	GGTACC	1 cut(s)	695
AspA2I	CCTAGG	1 cut(s)	299
AspLEI	GCGC	4 cut(s)	19, 58, 115, 241
AspS9I	GGNCC	3 cut(s)	205, 232, 351
AsuC2I	CCSGG	2 cut(s)	236, 349
AvaII	GGWCC	2 cut(s)	232, 351
AvrII	CCTAGG	1 cut(s)	299
BaeGI	GKGCMC	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	304
BanI	GGYRCC	4 cut(s)	238, 431, 517, 695
BanII	GRGCYC	2 cut(s)	150, 338
BbrPI	CACGTG	1 cut(s)	281
BbsI	GAAGAC	1 cut(s)	555
Bbv12I	GWGCWC	3 cut(s)	150, 338, 571
BbvI	GCAGC	1 cut(s)	70
BccI	CCATC	1 cut(s)	652
BceAI	ACGGC	3 cut(s)	94, 192, 239
BciT130I	CCWGG	1 cut(s)	613
BcnI	CCSGG	2 cut(s)	236, 349
BcoDI	GTCTC	5 cut(s)	265, 554, 661, 731, 768
BfaI	CTAG	2 cut(s)	300, 438
BfoI	RGCGCY	2 cut(s)	20, 242
BglI	GCCNNNNNGGC	1 cut(s)	274
BisI	GCNGC	8 cut(s)	6, 59, 89, 142, 214, 252, 370, 637
BlnI	CCTAGG	1 cut(s)	299
BlsI	GCNGC	8 cut(s)	7, 60, 90, 143, 215, 253, 371, 638
Bme1390I	CCNGG	3 cut(s)	236, 349, 613
Bme18I	GGWCC	2 cut(s)	232, 351
BmgT120I	GGNCC	3 cut(s)	205, 232, 351
BmrFI	CCNGG	3 cut(s)	236, 349, 613
BmsI	GCATC	1 cut(s)	724
BpiI	GAAGAC	1 cut(s)	555
BpmI	CTGGAG	1 cut(s)	585
BpuMI	CCSGG	2 cut(s)	236, 349
BsaAI	YACGTR	1 cut(s)	281
BsaHI	GRCGYC	1 cut(s)	239
BsaI	GGTCTC	2 cut(s)	265, 731
BsaJI	CCNNGG	7 cut(s)	208, 228, 255, 272, 299, 543, 612
BsaXI	ACNNNNNCTCC	4 cut(s)	240, 270, 391, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	203, 241, 300, 428
Bse118I	RCCGGY	2 cut(s)	91, 698
Bse1I	ACTGG	1 cut(s)	568
Bse3DI	GCAATG	2 cut(s)	711, 754
BseBI	CCWGG	1 cut(s)	613
BseDI	CCNNGG	7 cut(s)	208, 228, 255, 272, 299, 543, 612
BseGI	GGATG	1 cut(s)	341
BseLI	CCNNNNNNNGG	4 cut(s)	203, 241, 300, 428
BseMI	GCAATG	2 cut(s)	711, 754
BseMII	CTCAG	1 cut(s)	779
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	253
BseSI	GKGCMC	1 cut(s)	436
BseXI	GCAGC	1 cut(s)	70
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	7 cut(s)	207, 213, 277, 361, 386, 454, 702
BshNI	GGYRCC	4 cut(s)	238, 431, 517, 695
BsiHKAI	GWGCWC	3 cut(s)	150, 338, 571
BsiSI	CCGG	7 cut(s)	92, 236, 242, 348, 410, 422, 699
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	4 cut(s)	203, 241, 300, 428
BsmAI	GTCTC	5 cut(s)	265, 554, 661, 731, 768
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	7 cut(s)	207, 213, 277, 361, 386, 454, 702
Bso31I	GGTCTC	2 cut(s)	265, 731
Bsp1286I	GDGCHC	4 cut(s)	150, 338, 436, 571
Bsp143I	GATC	2 cut(s)	82, 304
BspANI	GGCC	7 cut(s)	207, 213, 277, 361, 386, 454, 702
BspCNI	CTCAG	1 cut(s)	778
BspFNI	CGCG	1 cut(s)	56
BspPI	GGATC	2 cut(s)	299, 312
BspT107I	GGYRCC	4 cut(s)	238, 431, 517, 695
BspTNI	GGTCTC	2 cut(s)	265, 731
BsrBI	CCGCTC	2 cut(s)	141, 319
BsrDI	GCAATG	2 cut(s)	711, 754
BsrFI	RCCGGY	2 cut(s)	91, 698
BsrI	ACTGG	1 cut(s)	568
BssAI	RCCGGY	2 cut(s)	91, 698
BssECI	CCNNGG	7 cut(s)	208, 228, 255, 272, 299, 543, 612
BssMI	GATC	2 cut(s)	82, 304
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	3 cut(s)	228, 299, 543
Bst2UI	CCWGG	1 cut(s)	613
Bst6I	CTCTTC	2 cut(s)	486, 681
BstACI	GRCGYC	1 cut(s)	239
BstBAI	YACGTR	1 cut(s)	281
BstC8I	GCNNGC	4 cut(s)	93, 146, 218, 452
BstDEI	CTNAG	1 cut(s)	765
BstDSI	CCRYGG	2 cut(s)	208, 255
BstF5I	GGATG	1 cut(s)	341
BstFNI	CGCG	1 cut(s)	56
BstH2I	RGCGCY	2 cut(s)	20, 242
BstHHI	GCGC	4 cut(s)	19, 58, 115, 241
BstKTI	GATC	2 cut(s)	85, 307
BstMAI	GTCTC	5 cut(s)	265, 554, 661, 731, 768
BstMBI	GATC	2 cut(s)	82, 304
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 112, 213, 274, 431, 485
BstNI	CCWGG	1 cut(s)	613
BstSCI	CCNGG	3 cut(s)	234, 347, 611
BstSLI	GKGCMC	1 cut(s)	436
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	70
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	304
BstXI	CCANNNNNNTGG	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	7 cut(s)	207, 213, 277, 361, 386, 454, 702
BtgI	CCRYGG	2 cut(s)	208, 255
BtsCI	GGATG	1 cut(s)	341
Cac8I	GCNNGC	4 cut(s)	93, 146, 218, 452
CaiI	CAGNNNCTG	1 cut(s)	563
CfoI	GCGC	4 cut(s)	19, 58, 115, 241
Cfr10I	RCCGGY	2 cut(s)	91, 698
Cfr13I	GGNCC	3 cut(s)	205, 232, 351
Csp6I	GTAC	1 cut(s)	696
CviAII	CATG	2 cut(s)	172, 622
CviQI	GTAC	1 cut(s)	696
DdeI	CTNAG	1 cut(s)	765
DinI	GGCGCC	1 cut(s)	240
DpnI	GATC	2 cut(s)	84, 306
DpnII	GATC	2 cut(s)	82, 304
EaeI	YGGCCR	1 cut(s)	211
Eam1104I	CTCTTC	2 cut(s)	486, 681
EarI	CTCTTC	2 cut(s)	486, 681
EciI	GGCGGA	1 cut(s)	183
Ecl136II	GAGCTC	2 cut(s)	148, 336
Eco130I	CCWWGG	3 cut(s)	228, 299, 543
Eco24I	GRGCYC	2 cut(s)	150, 338
Eco31I	GGTCTC	2 cut(s)	265, 731
Eco47I	GGWCC	2 cut(s)	232, 351
Eco53kI	GAGCTC	2 cut(s)	148, 336
Eco57I	CTGAAG	1 cut(s)	510
Eco72I	CACGTG	1 cut(s)	281
EcoICRI	GAGCTC	2 cut(s)	148, 336
EcoO109I	RGGNCCY	1 cut(s)	232
EcoRI	GAATTC	1 cut(s)	750
EcoRII	CCWGG	1 cut(s)	611
EcoT14I	CCWWGG	3 cut(s)	228, 299, 543
EcoT38I	GRGCYC	2 cut(s)	150, 338
EgeI	GGCGCC	1 cut(s)	240
EheI	GGCGCC	1 cut(s)	240
ErhI	CCWWGG	3 cut(s)	228, 299, 543
FaeI	CATG	2 cut(s)	175, 625
FaiI	YATR	4 cut(s)	173, 623, 641, 791
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	2 cut(s)	171, 621
FauI	CCCGC	3 cut(s)	195, 225, 324
Fnu4HI	GCNGC	8 cut(s)	6, 59, 89, 142, 214, 252, 370, 637
FokI	GGATG	1 cut(s)	328
FriOI	GRGCYC	2 cut(s)	150, 338
Fsp4HI	GCNGC	8 cut(s)	6, 59, 89, 142, 214, 252, 370, 637
FspBI	CTAG	2 cut(s)	300, 438
GlaI	GCGC	4 cut(s)	18, 57, 114, 240
GluI	GCNGC	8 cut(s)	6, 59, 89, 142, 214, 252, 370, 637
GsuI	CTGGAG	1 cut(s)	585
HaeII	RGCGCY	2 cut(s)	20, 242
HaeIII	GGCC	7 cut(s)	207, 213, 277, 361, 386, 454, 702
HapII	CCGG	7 cut(s)	92, 236, 242, 348, 410, 422, 699
HhaI	GCGC	4 cut(s)	19, 58, 115, 241
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	175, 625
Hin6I	GCGC	4 cut(s)	17, 56, 113, 239
HinP1I	GCGC	4 cut(s)	17, 56, 113, 239
HincII	GTYRAC	1 cut(s)	540
HindII	GTYRAC	1 cut(s)	540
HinfI	GANTC	3 cut(s)	68, 406, 626
HpaII	CCGG	7 cut(s)	92, 236, 242, 348, 410, 422, 699
Hpy166II	GTNNAC	2 cut(s)	72, 540
Hpy188I	TCNGA	6 cut(s)	273, 355, 378, 399, 483, 768
Hpy188III	TCNNGA	1 cut(s)	160
Hpy8I	GTNNAC	2 cut(s)	72, 540
HpyAV	CCTTC	3 cut(s)	239, 376, 503
HpyCH4IV	ACGT	3 cut(s)	280, 364, 552
HpyCH4V	TGCA	1 cut(s)	780
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 112, 213, 274, 431, 485
HpyF3I	CTNAG	1 cut(s)	765
HpySE526I	ACGT	3 cut(s)	280, 364, 552
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	2 cut(s)	175, 625
HspAI	GCGC	4 cut(s)	17, 56, 113, 239
KasI	GGCGCC	1 cut(s)	238
KpnI	GGTACC	1 cut(s)	699
KroI	GCCGGC	1 cut(s)	91
KroNI	GCCGGC	1 cut(s)	93
Kzo9I	GATC	2 cut(s)	82, 304
LmnI	GCTCC	6 cut(s)	196, 248, 324, 424, 484, 566
Lsp1109I	GCAGC	1 cut(s)	70
LweI	GCATC	1 cut(s)	724
MaeI	CTAG	2 cut(s)	300, 438
MaeII	ACGT	3 cut(s)	280, 364, 552
MaeIII	GTNAC	1 cut(s)	553
MalI	GATC	2 cut(s)	84, 306
MbiI	CCGCTC	2 cut(s)	141, 319
MboI	GATC	2 cut(s)	82, 304
MboII	GAAGA	5 cut(s)	391, 503, 518, 560, 698
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	4 cut(s)	150, 338, 436, 571
MluCI	AATT	5 cut(s)	324, 530, 681, 750, 782
Mly113I	GGCGCC	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	77, 400
MmeI	TCCRAC	2 cut(s)	378, 422
MroNI	GCCGGC	1 cut(s)	91
MroXI	GAANNNNTTC	1 cut(s)	750
MseI	TTAA	3 cut(s)	21, 680, 796
MspI	CCGG	7 cut(s)	92, 236, 242, 348, 410, 422, 699
MspR9I	CCNGG	3 cut(s)	236, 349, 613
MunI	CAATTG	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	613
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	6 cut(s)	14, 112, 213, 274, 431, 485
NaeI	GCCGGC	1 cut(s)	93
NarI	GGCGCC	1 cut(s)	239
NciI	CCSGG	2 cut(s)	236, 349
NdeII	GATC	2 cut(s)	82, 304
NgoMIV	GCCGGC	1 cut(s)	91
NlaIII	CATG	2 cut(s)	175, 625
PcsI	WCGNNNNNNNCGW	1 cut(s)	422
PdiI	GCCGGC	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	750
PfeI	GAWTC	1 cut(s)	626
PkrI	GCNGC	8 cut(s)	7, 60, 90, 143, 215, 253, 371, 638
PleI	GAGTC	2 cut(s)	76, 400
PluTI	GGCGCC	1 cut(s)	242
PmaCI	CACGTG	1 cut(s)	281
PmlI	CACGTG	1 cut(s)	281
PpsI	GAGTC	2 cut(s)	76, 400
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	232
Psp124BI	GAGCTC	2 cut(s)	150, 338
Psp5II	RGGWCCY	1 cut(s)	232
Psp6I	CCWGG	1 cut(s)	611
PspCI	CACGTG	1 cut(s)	281
PspGI	CCWGG	1 cut(s)	611
PspPI	GGNCC	3 cut(s)	205, 232, 351
PspPPI	RGGWCCY	1 cut(s)	232
PstNI	CAGNNNCTG	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	304
RsaI	GTAC	1 cut(s)	697
RsaNI	GTAC	1 cut(s)	696
SacI	GAGCTC	2 cut(s)	150, 338
SaqAI	TTAA	3 cut(s)	21, 680, 796
SatI	GCNGC	8 cut(s)	6, 59, 89, 142, 214, 252, 370, 637
Sau3AI	GATC	2 cut(s)	82, 304
Sau96I	GGNCC	3 cut(s)	205, 232, 351
SchI	GAGTC	2 cut(s)	77, 400
ScrFI	CCNGG	3 cut(s)	236, 349, 613
SduI	GDGCHC	4 cut(s)	150, 338, 436, 571
SfaNI	GCATC	1 cut(s)	724
SfoI	GGCGCC	1 cut(s)	240
SinI	GGWCC	2 cut(s)	232, 351
Sse9I	AATT	5 cut(s)	324, 530, 681, 750, 782
SspDI	GGCGCC	1 cut(s)	238
SspMI	CTAG	2 cut(s)	300, 438
SstI	GAGCTC	2 cut(s)	150, 338
StyD4I	CCNGG	3 cut(s)	234, 347, 611
StyI	CCWWGG	3 cut(s)	228, 299, 543
TaiI	ACGT	3 cut(s)	283, 367, 555
TaqI	TCGA	4 cut(s)	38, 66, 338, 404
TasI	AATT	5 cut(s)	324, 530, 681, 750, 782
TauI	GCSGC	7 cut(s)	8, 91, 144, 216, 254, 372, 639
TfiI	GAWTC	1 cut(s)	626
Tru1I	TTAA	3 cut(s)	21, 680, 796
Tru9I	TTAA	3 cut(s)	21, 680, 796
TseI	GCWGC	1 cut(s)	58
TspDTI	ATGAA	6 cut(s)	146, 188, 513, 542, 612, 743
TspGWI	ACGGA	2 cut(s)	297, 463
VpaK11BI	GGWCC	2 cut(s)	232, 351
XapI	RAATTY	2 cut(s)	530, 750
XcmI	CCANNNNNNNNNTGG	1 cut(s)	619
XmaJI	CCTAGG	1 cut(s)	299
XmnI	GAANNNNTTC	1 cut(s)	750
XspI	CTAG	2 cut(s)	300, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.