Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

17997926 .. 17999886

Gene Structure 1961 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G161100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCACTGAAGAGGTTAATAAACCTCTATCACTCCCTCCTTACCCTGAGATGATTCTGAAGGCCATTGAAGCATTGAATGAAAAGAATGGCTCGAACAAATCCTCAATATCAAAGTTCATTGAATCAACATATGGGGATTTGCCAGCCGGCCACAATTCACTTCTCTCTCACCACCTGAACAAAATGAAAGATAGTGGTGAGCTGGTATTCTGGAAAAACAACTACACCAAGCCGGATCCTAATGCACCACCGAGGCGGGGGCGTGGAAGGCCACCAAAACCCAAGGATTCACTGCCACCAGACGCGGTGTTGGGCCCAACAAGGCCTAGGGGCCGCCCGCCTAAGGACCCCAATGCGCCCCCAAAGCCTCCCAAGGTTAAGGTGTCTTCAGGAAGTGGGAAGCCAAGAGGGCGGCCAAGGAAGATGGCTAAGCCCACCGGAGGGTTAAGTGGCTCGGCCACGGTGACAGATACAATGCCCGGGAGGCCAAGGGGTAGGCCTCCAAAAGTGAAGGATTCACTGAGTGCTGAAGTTAGTGTTGAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

184

Amino Acids

19.73

Weight (kDa)

10.25

Isoelectric Point (pI)

50.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	308
AciI	CCGC	5 cut(s)	259, 308, 337, 341, 415
AclWI	GGATC	2 cut(s)	233, 246
AcoI	YGGCCR	4 cut(s)	3, 151, 416, 459
AcuI	CTGAAG	4 cut(s)	30, 80, 375, 552
AdeI	CACNNNGTG	1 cut(s)	527
AfiI	CCNNNNNNNGG	4 cut(s)	260, 346, 443, 444
AgsI	TTSAA	3 cut(s)	71, 79, 125
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
AlwI	GGATC	2 cut(s)	233, 246
Ama87I	CYCGRG	1 cut(s)	482
ApaI	GGGCCC	1 cut(s)	320
AspA2I	CCTAGG	1 cut(s)	329
AspLEI	GCGC	1 cut(s)	361
AspS9I	GGNCC	4 cut(s)	316, 317, 334, 349
AsuC2I	CCSGG	2 cut(s)	483, 484
AsuHPI	GGTGA	3 cut(s)	164, 212, 478
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	1 cut(s)	349
AvrII	CCTAGG	1 cut(s)	329
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	320
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	238
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	381
BccI	CCATC	1 cut(s)	421
BcnI	CCSGG	2 cut(s)	483, 484
BfaI	CTAG	1 cut(s)	330
BglI	GCCNNNNNGGC	2 cut(s)	412, 487
BisI	GCNGC	2 cut(s)	337, 416
BlnI	CCTAGG	1 cut(s)	329
BlpI	GCTNAGC	1 cut(s)	432
BlsI	GCNGC	2 cut(s)	338, 417
Bme1390I	CCNGG	2 cut(s)	483, 484
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	4 cut(s)	316, 317, 334, 349
BmiI	GGNNCC	4 cut(s)	240, 318, 335, 351
BmrFI	CCNGG	2 cut(s)	483, 484
BpiI	GAAGAC	1 cut(s)	381
Bpu1102I	GCTNAGC	1 cut(s)	432
BpuMI	CCSGG	2 cut(s)	483, 484
BsaJI	CCNNGG	8 cut(s)	254, 285, 329, 375, 419, 462, 482, 491
BsaWI	WCCGGW	1 cut(s)	440
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 346, 443, 444
Bse118I	RCCGGY	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	345
BseDI	CCNNGG	8 cut(s)	254, 285, 329, 375, 419, 462, 482, 491
BseLI	CCNNNNNNNGG	4 cut(s)	260, 346, 443, 444
BseMII	CTCAG	2 cut(s)	39, 515
BseSI	GKGCMC	1 cut(s)	320
Bsh1236I	CGCG	1 cut(s)	308
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	4 cut(s)	150, 236, 441, 483
BslI	CCNNNNNNNGG	4 cut(s)	260, 346, 443, 444
BsoBI	CYCGRG	1 cut(s)	482
Bsp120I	GGGCCC	1 cut(s)	316
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	1 cut(s)	238
Bsp1720I	GCTNAGC	1 cut(s)	432
BspACI	CCGC	5 cut(s)	259, 308, 337, 341, 415
BspCNI	CTCAG	2 cut(s)	40, 516
BspFNI	CGCG	1 cut(s)	308
BspLI	GGNNCC	4 cut(s)	240, 318, 335, 351
BspPI	GGATC	2 cut(s)	233, 246
BsrFI	RCCGGY	1 cut(s)	149
BssAI	RCCGGY	1 cut(s)	149
BssECI	CCNNGG	8 cut(s)	254, 285, 329, 375, 419, 462, 482, 491
BssMI	GATC	1 cut(s)	238
BssT1I	CCWWGG	5 cut(s)	285, 329, 375, 419, 491
Bst4CI	ACNGT	1 cut(s)	466
Bst6I	CTCTTC	1 cut(s)	6
BstC8I	GCNNGC	3 cut(s)	147, 151, 341
BstDEI	CTNAG	4 cut(s)	48, 345, 432, 524
BstDSI	CCRYGG	1 cut(s)	462
BstFNI	CGCG	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	361
BstKTI	GATC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	238
BstMWI	GCNNNNNNNGC	5 cut(s)	71, 271, 367, 412, 487
BstSCI	CCNGG	2 cut(s)	481, 482
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	308
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	345
BtgI	CCRYGG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	293
BtsIMutI	CAGTG	3 cut(s)	6, 293, 521
Cac8I	GCNNGC	3 cut(s)	147, 151, 341
CfoI	GCGC	1 cut(s)	361
Cfr10I	RCCGGY	1 cut(s)	149
Cfr13I	GGNCC	4 cut(s)	316, 317, 334, 349
Cfr9I	CCCGGG	1 cut(s)	482
CseI	GACGC	1 cut(s)	314
DdeI	CTNAG	4 cut(s)	48, 345, 432, 524
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
DraIII	CACNNNGTG	1 cut(s)	527
EaeI	YGGCCR	4 cut(s)	3, 151, 416, 459
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	5 cut(s)	285, 329, 375, 419, 491
Eco147I	AGGCCT	2 cut(s)	328, 502
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	4 cut(s)	30, 80, 375, 552
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT14I	CCWWGG	5 cut(s)	285, 329, 375, 419, 491
EcoT38I	GRGCYC	1 cut(s)	320
ErhI	CCWWGG	5 cut(s)	285, 329, 375, 419, 491
FaiI	YATR	2 cut(s)	133, 135
FauI	CCCGC	2 cut(s)	252, 348
FauNDI	CATATG	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	337, 416
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	2 cut(s)	337, 416
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	360
GluI	GCNGC	2 cut(s)	337, 416
HapII	CCGG	4 cut(s)	150, 236, 441, 483
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	361
Hin6I	GCGC	1 cut(s)	359
HinP1I	GCGC	1 cut(s)	359
HinfI	GANTC	4 cut(s)	55, 125, 290, 518
HpaII	CCGG	4 cut(s)	150, 236, 441, 483
HphI	GGTGA	3 cut(s)	164, 212, 478
Hpy188I	TCNGA	1 cut(s)	60
Hpy188III	TCNNGA	2 cut(s)	214, 393
HpyAV	CCTTC	3 cut(s)	55, 264, 508
HpyCH4III	ACNGT	1 cut(s)	466
HpyCH4V	TGCA	1 cut(s)	248
HpyF10VI	GCNNNNNNNGC	5 cut(s)	71, 271, 367, 412, 487
HpyF3I	CTNAG	4 cut(s)	48, 345, 432, 524
HspAI	GCGC	1 cut(s)	359
KroI	GCCGGC	1 cut(s)	149
KroNI	GCCGGC	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	238
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	3 cut(s)	23, 381, 436
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	157
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	18, 381, 449
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	150, 236, 441, 483
MspR9I	CCNGG	2 cut(s)	483, 484
MvnI	CGCG	1 cut(s)	308
MwoI	GCNNNNNNNGC	5 cut(s)	71, 271, 367, 412, 487
NaeI	GCCGGC	1 cut(s)	151
NciI	CCSGG	2 cut(s)	483, 484
NdeI	CATATG	1 cut(s)	133
NdeII	GATC	1 cut(s)	238
NgoMIV	GCCGGC	1 cut(s)	149
NlaIV	GGNNCC	4 cut(s)	240, 318, 335, 351
NmeAIII	GCCGAG	1 cut(s)	437
NmuCI	GTSAC	1 cut(s)	466
PceI	AGGCCT	2 cut(s)	328, 502
PdiI	GCCGGC	1 cut(s)	151
PfeI	GAWTC	4 cut(s)	55, 125, 290, 518
PkrI	GCNGC	2 cut(s)	338, 417
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
PspN4I	GGNNCC	4 cut(s)	240, 318, 335, 351
PspOMI	GGGCCC	1 cut(s)	316
PspPI	GGNCC	4 cut(s)	316, 317, 334, 349
PspPPI	RGGWCCY	1 cut(s)	349
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	18, 381, 449
SatI	GCNGC	2 cut(s)	337, 416
Sau3AI	GATC	1 cut(s)	238
Sau96I	GGNCC	4 cut(s)	316, 317, 334, 349
ScrFI	CCNGG	2 cut(s)	483, 484
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	6 cut(s)	18, 28, 180, 207, 381, 387
SinI	GGWCC	1 cut(s)	349
SmaI	CCCGGG	1 cut(s)	484
Sse9I	AATT	1 cut(s)	157
SseBI	AGGCCT	2 cut(s)	328, 502
SsiI	CCGC	5 cut(s)	259, 308, 337, 341, 415
SspMI	CTAG	1 cut(s)	330
StuI	AGGCCT	2 cut(s)	328, 502
StyD4I	CCNGG	2 cut(s)	481, 482
StyI	CCWWGG	5 cut(s)	285, 329, 375, 419, 491
TaaI	ACNGT	1 cut(s)	466
TaqI	TCGA	1 cut(s)	95
TasI	AATT	1 cut(s)	157
TauI	GCSGC	2 cut(s)	339, 418
TfiI	GAWTC	4 cut(s)	55, 125, 290, 518
Tru1I	TTAA	3 cut(s)	18, 381, 449
Tru9I	TTAA	3 cut(s)	18, 381, 449
TscAI	CASTG	3 cut(s)	13, 300, 528
TseFI	GTSAC	1 cut(s)	466
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	96, 109, 203
TspMI	CCCGGG	1 cut(s)	482
TspRI	CASTG	3 cut(s)	13, 300, 528
VpaK11BI	GGWCC	1 cut(s)	349
XmaI	CCCGGG	1 cut(s)	482
XmaJI	CCTAGG	1 cut(s)	329
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.