Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

1338644 .. 1339335

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g02000.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCGACGGAGAACTCCAACAATCCACTAGTACCGCCGCCACCGCCGGTTCCCTCTCTCCCCCAGTACCCAGAGATGATTATGGCGGCAATCGAGGCCCTGAACGACATCAACGGGTCAAGCAAGTCCGCAATCGCGAAGCACATCGAGTCAACGTACGGAGATCTGCCGGAATCTCACGCGGCCCTCCTCGCGCACCACCTCAACAAGATGAAGGACACCGGCGAGCTCGTCCTGGTCAAGAACAACTACATGAAGCCCGACCCCAACGCGCCGCCTAAGAGGGGCCGCGGCCGTCCTCCCAAGGCCAAGACCCCACTCCCCGCTGGCACTGTCTCCTCGCCGCCAAGGCCACGTGGCAGGCCCCCCAAGCCCAGGGACCCCTTCGCACCGCCACCTCAGCCCAAGACACATTCCGGAACTGGAAGGCCACGTGGCCGCCCTCCCAAGAAGGCCAAAACGACAACGTCTTCTGCTCCGGTTTCAGCTCCCACCCCAGCCACGGCAACCGGCGCGCCGAGAGGCAGAGGAAGGCCGCCGAAGGTGAAACAGACCGCCGTGGCCCCGGTTGGTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

193

Amino Acids

20.16

Weight (kDa)

10.64

Isoelectric Point (pI)

63.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	6 cut(s)	137, 182, 194, 272, 291, 515
AccIII	TCCGGA	1 cut(s)	416
AcoI	YGGCCR	2 cut(s)	292, 436
AcvI	CACGTG	2 cut(s)	356, 434
AfaI	GTAC	3 cut(s)	33, 68, 158
AfiI	CCNNNNNNNGG	3 cut(s)	284, 375, 502
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	234, 374
AluBI	AGCT	2 cut(s)	229, 488
AluI	AGCT	2 cut(s)	229, 488
Alw21I	GWGCWC	1 cut(s)	231
Alw26I	GTCTC	1 cut(s)	340
Aor13HI	TCCGGA	1 cut(s)	416
AscI	GGCGCGCC	1 cut(s)	513
AspLEI	GCGC	4 cut(s)	196, 274, 515, 517
AspS9I	GGNCC	6 cut(s)	97, 184, 286, 363, 379, 562
AsuC2I	CCSGG	1 cut(s)	566
AsuHPI	GGTGA	1 cut(s)	556
AvaII	GGWCC	1 cut(s)	379
BanII	GRGCYC	1 cut(s)	231
BbrPI	CACGTG	2 cut(s)	356, 434
BbsI	GAAGAC	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	399
BceAI	ACGGC	3 cut(s)	279, 519, 542
BciT130I	CCWGG	2 cut(s)	236, 376
BcnI	CCSGG	1 cut(s)	566
BcoDI	GTCTC	1 cut(s)	340
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	1 cut(s)	29
BglI	GCCNNNNNGGC	1 cut(s)	349
BglII	AGATCT	1 cut(s)	163
BisI	GCNGC	9 cut(s)	38, 87, 183, 275, 289, 292, 344, 439, 536
BlsI	GCNGC	9 cut(s)	39, 88, 184, 276, 290, 293, 345, 440, 537
Bme1390I	CCNGG	3 cut(s)	236, 376, 566
Bme18I	GGWCC	1 cut(s)	379
BmgT120I	GGNCC	6 cut(s)	97, 184, 286, 363, 379, 562
BmiI	GGNNCC	6 cut(s)	51, 287, 365, 380, 381, 564
BmrFI	CCNGG	3 cut(s)	236, 376, 566
BmrI	ACTGGG	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	58
BpiI	GAAGAC	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	399
BpuMI	CCSGG	1 cut(s)	566
BsaAI	YACGTR	2 cut(s)	356, 434
BsaJI	CCNNGG	8 cut(s)	289, 303, 347, 374, 375, 501, 558, 564
BsaWI	WCCGGW	2 cut(s)	416, 478
Bsc4I	CCNNNNNNNGG	3 cut(s)	284, 375, 502
Bse118I	RCCGGY	3 cut(s)	46, 221, 509
Bse1I	ACTGG	2 cut(s)	64, 427
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	2 cut(s)	236, 376
BseDI	CCNNGG	8 cut(s)	289, 303, 347, 374, 375, 501, 558, 564
BseLI	CCNNNNNNNGG	3 cut(s)	284, 375, 502
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	64, 427
BsePI	GCGCGC	1 cut(s)	513
BseRI	GAGGAG	2 cut(s)	179, 328
BseX3I	CGGCCG	1 cut(s)	292
BseYI	CCCAGC	1 cut(s)	496
Bsh1236I	CGCG	6 cut(s)	137, 182, 194, 272, 291, 515
Bsh1285I	CGRYCG	1 cut(s)	295
BsiEI	CGRYCG	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	231
BsiSI	CCGG	7 cut(s)	47, 170, 222, 417, 479, 510, 566
BsiWI	CGTACG	1 cut(s)	156
BslFI	GGGAC	1 cut(s)	392
BslI	CCNNNNNNNGG	3 cut(s)	284, 375, 502
BsmAI	GTCTC	1 cut(s)	340
BsmFI	GGGAC	1 cut(s)	392
Bsp1286I	GDGCHC	1 cut(s)	231
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	1 cut(s)	163
Bsp68I	TCGCGA	1 cut(s)	137
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	416
BspFNI	CGCG	6 cut(s)	137, 182, 194, 272, 291, 515
BspLI	GGNNCC	6 cut(s)	51, 287, 365, 380, 381, 564
BsrFI	RCCGGY	3 cut(s)	46, 221, 509
BsrI	ACTGG	2 cut(s)	64, 427
BssAI	RCCGGY	3 cut(s)	46, 221, 509
BssECI	CCNNGG	8 cut(s)	289, 303, 347, 374, 375, 501, 558, 564
BssHII	GCGCGC	1 cut(s)	513
BssMI	GATC	1 cut(s)	163
BssT1I	CCWWGG	2 cut(s)	303, 347
Bst2UI	CCWGG	2 cut(s)	236, 376
Bst4CI	ACNGT	1 cut(s)	334
BstBAI	YACGTR	2 cut(s)	356, 434
BstC8I	GCNNGC	4 cut(s)	227, 328, 362, 515
BstDEI	CTNAG	2 cut(s)	279, 399
BstDSI	CCRYGG	3 cut(s)	289, 501, 558
BstFNI	CGCG	6 cut(s)	137, 182, 194, 272, 291, 515
BstHHI	GCGC	4 cut(s)	196, 274, 515, 517
BstKTI	GATC	1 cut(s)	166
BstMAI	GTCTC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	163
BstMCI	CGRYCG	1 cut(s)	295
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 95, 191, 349, 370, 400, 512
BstNI	CCWGG	2 cut(s)	236, 376
BstSCI	CCNGG	3 cut(s)	234, 374, 564
BstUI	CGCG	6 cut(s)	137, 182, 194, 272, 291, 515
BstV2I	GAAGAC	1 cut(s)	462
BstX2I	RGATCY	1 cut(s)	163
BstYI	RGATCY	1 cut(s)	163
BstZI	CGGCCG	1 cut(s)	292
BtgI	CCRYGG	3 cut(s)	289, 501, 558
BtsIMutI	CAGTG	1 cut(s)	330
BtuMI	TCGCGA	1 cut(s)	137
Cac8I	GCNNGC	4 cut(s)	227, 328, 362, 515
CfoI	GCGC	4 cut(s)	196, 274, 515, 517
Cfr10I	RCCGGY	3 cut(s)	46, 221, 509
Cfr13I	GGNCC	6 cut(s)	97, 184, 286, 363, 379, 562
Cfr42I	CCGCGG	1 cut(s)	292
Csp6I	GTAC	3 cut(s)	32, 67, 157
CviAII	CATG	1 cut(s)	253
CviQI	GTAC	3 cut(s)	32, 67, 157
DdeI	CTNAG	2 cut(s)	279, 399
DpnI	GATC	1 cut(s)	165
DpnII	GATC	1 cut(s)	163
EaeI	YGGCCR	2 cut(s)	292, 436
EagI	CGGCCG	1 cut(s)	292
Ecl136II	GAGCTC	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	292
Eco130I	CCWWGG	2 cut(s)	303, 347
Eco24I	GRGCYC	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	379
Eco52I	CGGCCG	1 cut(s)	292
Eco53kI	GAGCTC	1 cut(s)	229
Eco72I	CACGTG	2 cut(s)	356, 434
EcoICRI	GAGCTC	1 cut(s)	229
EcoO109I	RGGNCCY	3 cut(s)	97, 363, 379
EcoRII	CCWGG	2 cut(s)	234, 374
EcoT14I	CCWWGG	2 cut(s)	303, 347
EcoT38I	GRGCYC	1 cut(s)	231
ErhI	CCWWGG	2 cut(s)	303, 347
FaeI	CATG	1 cut(s)	256
FaiI	YATR	2 cut(s)	83, 254
FaqI	GGGAC	1 cut(s)	392
FatI	CATG	1 cut(s)	252
FauI	CCCGC	1 cut(s)	331
Fnu4HI	GCNGC	9 cut(s)	38, 87, 183, 275, 289, 292, 344, 439, 536
FriOI	GRGCYC	1 cut(s)	231
Fsp4HI	GCNGC	9 cut(s)	38, 87, 183, 275, 289, 292, 344, 439, 536
FspBI	CTAG	1 cut(s)	29
GlaI	GCGC	4 cut(s)	195, 273, 514, 516
GluI	GCNGC	9 cut(s)	38, 87, 183, 275, 289, 292, 344, 439, 536
GsaI	CCCAGC	1 cut(s)	500
HapII	CCGG	7 cut(s)	47, 170, 222, 417, 479, 510, 566
HhaI	GCGC	4 cut(s)	196, 274, 515, 517
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	4 cut(s)	194, 272, 513, 515
HinP1I	GCGC	4 cut(s)	194, 272, 513, 515
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	149, 173
HpaII	CCGG	7 cut(s)	47, 170, 222, 417, 479, 510, 566
HphI	GGTGA	1 cut(s)	556
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188III	TCNNGA	3 cut(s)	136, 241, 417
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	6 cut(s)	208, 394, 420, 445, 525, 535
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4IV	ACGT	4 cut(s)	155, 355, 433, 467
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 95, 191, 349, 370, 400, 512
HpyF3I	CTNAG	2 cut(s)	279, 399
HpySE526I	ACGT	4 cut(s)	155, 355, 433, 467
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	4 cut(s)	194, 272, 513, 515
KflI	GGGWCCC	1 cut(s)	379
Kpn2I	TCCGGA	1 cut(s)	416
KspI	CCGCGG	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	163
LmnI	GCTCC	2 cut(s)	481, 493
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	4 cut(s)	155, 355, 433, 467
MalI	GATC	1 cut(s)	165
MboI	GATC	1 cut(s)	163
MboII	GAAGA	1 cut(s)	462
MflI	RGATCY	1 cut(s)	163
MhlI	GDGCHC	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	158
MmeI	TCCRAC	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	416
MspA1I	CMGCKG	2 cut(s)	291, 326
MspI	CCGG	7 cut(s)	47, 170, 222, 417, 479, 510, 566
MspR9I	CCNGG	3 cut(s)	236, 376, 566
MvaI	CCWGG	2 cut(s)	236, 376
MvnI	CGCG	6 cut(s)	137, 182, 194, 272, 291, 515
MwoI	GCNNNNNNNGC	7 cut(s)	43, 95, 191, 349, 370, 400, 512
NciI	CCSGG	1 cut(s)	566
NdeII	GATC	1 cut(s)	163
NlaIII	CATG	1 cut(s)	256
NlaIV	GGNNCC	6 cut(s)	51, 287, 365, 380, 381, 564
NmeAIII	GCCGAG	1 cut(s)	543
NruI	TCGCGA	1 cut(s)	137
PalAI	GGCGCGCC	1 cut(s)	513
PasI	CCCWGGG	1 cut(s)	375
PauI	GCGCGC	1 cut(s)	513
PfeI	GAWTC	1 cut(s)	173
Pfl23II	CGTACG	1 cut(s)	156
PflFI	GACNNNGTC	1 cut(s)	466
PkrI	GCNGC	9 cut(s)	39, 88, 184, 276, 290, 293, 345, 440, 537
PleI	GAGTC	1 cut(s)	157
PmaCI	CACGTG	2 cut(s)	356, 434
PmlI	CACGTG	2 cut(s)	356, 434
PpsI	GAGTC	1 cut(s)	157
Ppu21I	YACGTR	2 cut(s)	356, 434
PpuMI	RGGWCCY	1 cut(s)	379
Psp124BI	GAGCTC	1 cut(s)	231
Psp5II	RGGWCCY	1 cut(s)	379
Psp6I	CCWGG	2 cut(s)	234, 374
PspCI	CACGTG	2 cut(s)	356, 434
PspFI	CCCAGC	1 cut(s)	496
PspGI	CCWGG	2 cut(s)	234, 374
PspLI	CGTACG	1 cut(s)	156
PspN4I	GGNNCC	6 cut(s)	51, 287, 365, 380, 381, 564
PspPI	GGNCC	6 cut(s)	97, 184, 286, 363, 379, 562
PspPPI	RGGWCCY	1 cut(s)	379
PsuI	RGATCY	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	466
PteI	GCGCGC	1 cut(s)	513
RruI	TCGCGA	1 cut(s)	137
RsaI	GTAC	3 cut(s)	33, 68, 158
RsaNI	GTAC	3 cut(s)	32, 67, 157
SacI	GAGCTC	1 cut(s)	231
SacII	CCGCGG	1 cut(s)	292
SatI	GCNGC	9 cut(s)	38, 87, 183, 275, 289, 292, 344, 439, 536
Sau3AI	GATC	1 cut(s)	163
Sau96I	GGNCC	6 cut(s)	97, 184, 286, 363, 379, 562
SchI	GAGTC	1 cut(s)	158
ScrFI	CCNGG	3 cut(s)	236, 376, 566
SduI	GDGCHC	1 cut(s)	231
SetI	ASST	9 cut(s)	158, 204, 231, 358, 400, 436, 470, 490, 546
Sfr303I	CCGCGG	1 cut(s)	292
SgrAI	CRCCGGYG	1 cut(s)	221
SgrBI	CCGCGG	1 cut(s)	292
SgsI	GGCGCGCC	1 cut(s)	513
SinI	GGWCC	1 cut(s)	379
SpeI	ACTAGT	1 cut(s)	28
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	3 cut(s)	234, 374, 564
StyI	CCWWGG	2 cut(s)	303, 347
TaaI	ACNGT	1 cut(s)	334
TaiI	ACGT	4 cut(s)	158, 358, 436, 470
TaqI	TCGA	2 cut(s)	93, 147
TauI	GCSGC	9 cut(s)	40, 89, 185, 277, 291, 294, 346, 441, 538
TfiI	GAWTC	1 cut(s)	173
TscAI	CASTG	1 cut(s)	337
TspDTI	ATGAA	2 cut(s)	227, 269
TspGWI	ACGGA	2 cut(s)	23, 174
TspRI	CASTG	1 cut(s)	337
Tth111I	GACNNNGTC	1 cut(s)	466
VpaK11BI	GGWCC	1 cut(s)	379
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.