Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

31878350 .. 31880345

Gene Structure 1996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1258400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGGCCACTGAAGAGGTTAATAAACCTCCATCACTCCCTCCTTACCCTCAGATGATTCTGCAGGCAATTGAAGCCTTGAATGACAAGAATGGTTCGAACAAATCCTCCATCTCGAAATATATTGAATCAACCTATGGGGAAGTGCCGGCCGGGCACAGTACTCTCCTCTCTCACCACCTCAGCAAGATGAAAGATAATGGGGAGCTGGTGTTCTGGAAAAACAACTACACGAAGCCAGATCCCAATGCACCTCCGAGGAGGGGGCGTGGCCGGCCGCCAAAGCCCAAGGATCCATTGTCCCCGGACACCACCTTGACCTCACCAAAGGGTAGGGGCCGCCCGCCTAAGGACCCGGAAGCACCCCCAAAGCCTCCCAAGGTTAAGGTGTCTACAGGGAGTGGGAAGCCGAGAGGGCGGCCAAGGAAGATGGCAAAGCCTACCGGAGGTTTGAGTGGCTCGACCGCAGTGGAAGAGACAATGCCGGGGAGGCCAAGGGGTAGGCCTCCAAAGGTGAAGGATACATTGAGTGCTGGAGTTAGTGTTGGGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

184

Amino Acids

19.64

Weight (kDa)

10.21

Isoelectric Point (pI)

48.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	13 - 73	5.6e-12	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	389
AciI	CCGC	5 cut(s)	275, 337, 341, 415, 462
AclWI	GGATC	3 cut(s)	233, 284, 297
AcoI	YGGCCR	5 cut(s)	3, 147, 268, 272, 416
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	3 cut(s)	260, 346, 443
AgsI	TTSAA	3 cut(s)	71, 79, 125
AloI	GAACNNNNNNTCC	4 cut(s)	89, 121, 194, 226
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw26I	GTCTC	1 cut(s)	467
AlwI	GGATC	3 cut(s)	233, 284, 297
AoxI	GGCC	8 cut(s)	3, 147, 268, 272, 334, 416, 488, 500
AspS9I	GGNCC	2 cut(s)	334, 349
AsuC2I	CCSGG	4 cut(s)	151, 302, 353, 483
AsuHPI	GGTGA	3 cut(s)	164, 312, 523
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	349
AxyI	CCTNAGG	1 cut(s)	345
BaeGI	GKGCMC	1 cut(s)	156
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	289
BbvCI	CCTCAGC	1 cut(s)	179
BccI	CCATC	3 cut(s)	37, 116, 421
BciVI	GTATCC	1 cut(s)	511
BcnI	CCSGG	4 cut(s)	151, 302, 353, 483
BcoDI	GTCTC	1 cut(s)	467
BfmI	CTRYAG	2 cut(s)	59, 390
BfuI	GTATCC	1 cut(s)	511
BglI	GCCNNNNNGGC	3 cut(s)	151, 412, 487
BisI	GCNGC	3 cut(s)	275, 337, 416
BlsI	GCNGC	3 cut(s)	276, 338, 417
BmcAI	AGTACT	1 cut(s)	160
Bme1390I	CCNGG	4 cut(s)	151, 302, 353, 483
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	2 cut(s)	334, 349
BmiI	GGNNCC	3 cut(s)	291, 335, 351
BmrFI	CCNGG	4 cut(s)	151, 302, 353, 483
BpmI	CTGGAG	1 cut(s)	552
Bpu10I	CCTNAGC	1 cut(s)	179
Bpu14I	TTCGAA	1 cut(s)	95
BpuMI	CCSGG	4 cut(s)	151, 302, 353, 483
BsaJI	CCNNGG	7 cut(s)	254, 285, 300, 375, 419, 482, 491
BsaWI	WCCGGW	1 cut(s)	440
BsaXI	ACNNNNNCTCC	7 cut(s)	89, 119, 194, 224, 250, 280, 525
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 346, 443
Bse118I	RCCGGY	2 cut(s)	145, 270
Bse21I	CCTNAGG	1 cut(s)	345
BseDI	CCNNGG	7 cut(s)	254, 285, 300, 375, 419, 482, 491
BseLI	CCNNNNNNNGG	3 cut(s)	260, 346, 443
BseMII	CTCAG	2 cut(s)	62, 193
BseRI	GAGGAG	2 cut(s)	155, 271
BseSI	GKGCMC	1 cut(s)	156
BseX3I	CGGCCG	2 cut(s)	147, 272
Bsh1285I	CGRYCG	3 cut(s)	150, 275, 462
BshFI	GGCC	8 cut(s)	5, 149, 270, 274, 336, 418, 490, 502
BsiEI	CGRYCG	3 cut(s)	150, 275, 462
BsiSI	CCGG	7 cut(s)	146, 150, 271, 302, 353, 441, 482
BslFI	GGGAC	1 cut(s)	283
BslI	CCNNNNNNNGG	3 cut(s)	260, 346, 443
BsmAI	GTCTC	1 cut(s)	467
BsmFI	GGGAC	1 cut(s)	283
BsnI	GGCC	8 cut(s)	5, 149, 270, 274, 336, 418, 490, 502
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	156
Bsp143I	GATC	2 cut(s)	238, 289
BspACI	CCGC	5 cut(s)	275, 337, 341, 415, 462
BspANI	GGCC	8 cut(s)	5, 149, 270, 274, 336, 418, 490, 502
BspCNI	CTCAG	2 cut(s)	61, 192
BspLI	GGNNCC	3 cut(s)	291, 335, 351
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	3 cut(s)	233, 284, 297
BspT104I	TTCGAA	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	145, 270
BssAI	RCCGGY	2 cut(s)	145, 270
BssECI	CCNNGG	7 cut(s)	254, 285, 300, 375, 419, 482, 491
BssMI	GATC	2 cut(s)	238, 289
BssT1I	CCWWGG	4 cut(s)	285, 375, 419, 491
Bst4CI	ACNGT	1 cut(s)	158
Bst6I	CTCTTC	2 cut(s)	6, 465
BstBI	TTCGAA	1 cut(s)	95
BstC8I	GCNNGC	4 cut(s)	63, 147, 272, 341
BstDEI	CTNAG	3 cut(s)	48, 179, 345
BstENI	CCTNNNNNAGG	1 cut(s)	441
BstKTI	GATC	2 cut(s)	241, 292
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	238, 289
BstMCI	CGRYCG	3 cut(s)	150, 275, 462
BstMWI	GCNNNNNNNGC	6 cut(s)	71, 151, 271, 280, 412, 487
BstSCI	CCNGG	4 cut(s)	149, 300, 351, 481
BstSFI	CTRYAG	2 cut(s)	59, 390
BstSLI	GKGCMC	1 cut(s)	156
BstX2I	RGATCY	2 cut(s)	238, 289
BstYI	RGATCY	2 cut(s)	238, 289
BstZI	CGGCCG	2 cut(s)	147, 272
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	511
BsuRI	GGCC	8 cut(s)	5, 149, 270, 274, 336, 418, 490, 502
BtsI	GCAGTG	1 cut(s)	471
BtsIMutI	CAGTG	2 cut(s)	6, 471
Cac8I	GCNNGC	4 cut(s)	63, 147, 272, 341
Cfr10I	RCCGGY	2 cut(s)	145, 270
Cfr13I	GGNCC	2 cut(s)	334, 349
Csp6I	GTAC	1 cut(s)	159
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	3 cut(s)	48, 179, 345
DpnI	GATC	2 cut(s)	240, 291
DpnII	GATC	2 cut(s)	238, 289
EaeI	YGGCCR	5 cut(s)	3, 147, 268, 272, 416
EagI	CGGCCG	2 cut(s)	147, 272
Eam1104I	CTCTTC	2 cut(s)	6, 465
EarI	CTCTTC	2 cut(s)	6, 465
EclXI	CGGCCG	2 cut(s)	147, 272
Eco130I	CCWWGG	4 cut(s)	285, 375, 419, 491
Eco147I	AGGCCT	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	349
Eco52I	CGGCCG	2 cut(s)	147, 272
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	345
EcoNI	CCTNNNNNAGG	1 cut(s)	441
EcoO109I	RGGNCCY	1 cut(s)	349
EcoT14I	CCWWGG	4 cut(s)	285, 375, 419, 491
ErhI	CCWWGG	4 cut(s)	285, 375, 419, 491
FaiI	YATR	2 cut(s)	120, 135
FaqI	GGGAC	1 cut(s)	283
FauI	CCCGC	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	389
Fnu4HI	GCNGC	3 cut(s)	275, 337, 416
FseI	GGCCGGCC	1 cut(s)	274
Fsp4HI	GCNGC	3 cut(s)	275, 337, 416
GluI	GCNGC	3 cut(s)	275, 337, 416
GsuI	CTGGAG	1 cut(s)	552
HaeIII	GGCC	8 cut(s)	5, 149, 270, 274, 336, 418, 490, 502
HapII	CCGG	7 cut(s)	146, 150, 271, 302, 353, 441, 482
HinfI	GANTC	2 cut(s)	55, 125
HpaII	CCGG	7 cut(s)	146, 150, 271, 302, 353, 441, 482
HphI	GGTGA	3 cut(s)	164, 312, 523
Hpy166II	GTNNAC	1 cut(s)	390
Hpy188I	TCNGA	2 cut(s)	51, 255
Hpy188III	TCNNGA	2 cut(s)	112, 214
Hpy8I	GTNNAC	1 cut(s)	390
HpyAV	CCTTC	1 cut(s)	508
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	2 cut(s)	61, 248
HpyF10VI	GCNNNNNNNGC	6 cut(s)	71, 151, 271, 280, 412, 487
HpyF3I	CTNAG	3 cut(s)	48, 179, 345
KroI	GCCGGC	2 cut(s)	145, 270
KroNI	GCCGGC	2 cut(s)	147, 272
Kzo9I	GATC	2 cut(s)	238, 289
LmnI	GCTCC	1 cut(s)	202
MalI	GATC	2 cut(s)	240, 291
MboI	GATC	2 cut(s)	238, 289
MboII	GAAGA	3 cut(s)	23, 436, 482
MfeI	CAATTG	1 cut(s)	66
MflI	RGATCY	2 cut(s)	238, 289
MhlI	GDGCHC	1 cut(s)	156
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	66
MluNI	TGGCCA	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	2 cut(s)	145, 270
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	18, 381
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	7 cut(s)	146, 150, 271, 302, 353, 441, 482
MspR9I	CCNGG	4 cut(s)	151, 302, 353, 483
MunI	CAATTG	1 cut(s)	66
MwoI	GCNNNNNNNGC	6 cut(s)	71, 151, 271, 280, 412, 487
NaeI	GCCGGC	2 cut(s)	147, 272
NciI	CCSGG	4 cut(s)	151, 302, 353, 483
NdeII	GATC	2 cut(s)	238, 289
NgoMIV	GCCGGC	2 cut(s)	145, 270
NlaIV	GGNNCC	3 cut(s)	291, 335, 351
NmeAIII	GCCGAG	1 cut(s)	432
NspV	TTCGAA	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	502
PdiI	GCCGGC	2 cut(s)	147, 272
PfeI	GAWTC	2 cut(s)	55, 125
PkrI	GCNGC	3 cut(s)	276, 338, 417
PpuMI	RGGWCCY	1 cut(s)	349
Psp5II	RGGWCCY	1 cut(s)	349
PspN4I	GGNNCC	3 cut(s)	291, 335, 351
PspPI	GGNCC	2 cut(s)	334, 349
PspPPI	RGGWCCY	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	63
PsuI	RGATCY	2 cut(s)	238, 289
RigI	GGCCGGCC	1 cut(s)	274
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	18, 381
SatI	GCNGC	3 cut(s)	275, 337, 416
Sau3AI	GATC	2 cut(s)	238, 289
Sau96I	GGNCC	2 cut(s)	334, 349
ScaI	AGTACT	1 cut(s)	160
ScrFI	CCNGG	4 cut(s)	151, 302, 353, 483
SduI	GDGCHC	1 cut(s)	156
SfcI	CTRYAG	2 cut(s)	59, 390
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	66
SseBI	AGGCCT	1 cut(s)	502
SsiI	CCGC	5 cut(s)	275, 337, 341, 415, 462
StuI	AGGCCT	1 cut(s)	502
StyD4I	CCNGG	4 cut(s)	149, 300, 351, 481
StyI	CCWWGG	4 cut(s)	285, 375, 419, 491
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	3 cut(s)	95, 113, 458
TasI	AATT	1 cut(s)	66
TatI	WGTACW	1 cut(s)	158
TauI	GCSGC	3 cut(s)	277, 339, 418
TfiI	GAWTC	2 cut(s)	55, 125
Tru1I	TTAA	2 cut(s)	18, 381
Tru9I	TTAA	2 cut(s)	18, 381
TscAI	CASTG	2 cut(s)	13, 471
TspDTI	ATGAA	1 cut(s)	203
TspRI	CASTG	2 cut(s)	13, 471
VpaK11BI	GGWCC	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	441
XmiI	GTMKAC	1 cut(s)	389
ZrmI	AGTACT	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.