Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

40286342 .. 40302055

Gene Structure 15714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45597

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGAGGCTGGCCTGGGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGGGTTGCTTTGGTCACTCACTGTTTCCACTATCAGAGAGAGAGAGAGAGAGAGAGACAGAGTCTGCAAATTTAATGGCGACTGAAGAGGTCAAGAAACCGCCGTCTCTCCCTCCTTACCCTGAGATGATTCTGAAGGCCATCGAAGGGTTGAATGAGAAGAATGGCTCAAACAAGTCGTCAATATCAAGATTCATTGAATCAACTTATGGGGAATTGCCAGCCGGACACTCTGGACTCCTGTCTAATCACCTCAGCAAAATGAAAGATAGCGGTGAGTTGGTGTTCTGGAAAAACAACTACACAAAGCCGGACCCAAATGCCCCACCGAGACGGGGACGTGGAAGGCCACCAAAACCCAGGGATCCAGATCAGCCACAGGTTGCTAACTTGCCATCAGGAAGGGGCAGGGGACGCCCACCTAAGGACCCTGATGCACCCCCAAGACCTCCCAAGGTCAAGGCATCTTCAGGAAGCGGGAAACCTAGAGGACGACCGAGGAAGATGGCTCGACCTACTGGAGGTTTAAGTGGCTCCACAACCATAACAGATGCAGTGACTGGGAGGCCAAGGGGTAGACCTCCAAAGGTGAAGGATTCATTGAATGAATTGAGCATTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

236

Amino Acids

26.27

Weight (kDa)

9.98

Isoelectric Point (pI)

45.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	66 - 126	4.3e-09	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	661
AciI	CCGC	3 cut(s)	185, 357, 561
AclWI	GGATC	2 cut(s)	443, 456
AcsI	RAATTY	1 cut(s)	154
AcuI	CTGAAG	3 cut(s)	189, 239, 537
AcyI	GRCGYC	1 cut(s)	499
AfiI	CCNNNNNNNGG	4 cut(s)	231, 419, 508, 605
AgsI	TTSAA	3 cut(s)	238, 284, 688
AjiI	CACGTC	1 cut(s)	425
AjnI	CCWGG	2 cut(s)	12, 443
Alw26I	GTCTC	3 cut(s)	134, 195, 409
AlwI	GGATC	2 cut(s)	443, 456
AlwNI	CAGNNNCTG	2 cut(s)	149, 644
AoxI	GGCC	4 cut(s)	10, 222, 431, 650
ApoI	RAATTY	1 cut(s)	154
ArsI	GACNNNNNNTTYG	2 cut(s)	248, 280
AspS9I	GGNCC	2 cut(s)	397, 511
AsuHPI	GGTGA	3 cut(s)	326, 371, 685
AvaII	GGWCC	2 cut(s)	397, 511
AxyI	CCTNAGG	1 cut(s)	507
BamHI	GGATCC	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	338
BccI	CCATC	3 cut(s)	233, 487, 583
BceAI	ACGGC	1 cut(s)	172
BciT130I	CCWGG	2 cut(s)	14, 445
BcoDI	GTCTC	3 cut(s)	134, 195, 409
BfaI	CTAG	1 cut(s)	570
Bme1390I	CCNGG	2 cut(s)	14, 445
Bme18I	GGWCC	2 cut(s)	397, 511
BmgBI	CACGTC	1 cut(s)	425
BmgT120I	GGNCC	2 cut(s)	397, 511
BmiI	GGNNCC	4 cut(s)	399, 450, 513, 619
BmrFI	CCNGG	2 cut(s)	14, 445
BmrI	ACTGGG	1 cut(s)	654
BmsI	GCATC	3 cut(s)	508, 557, 625
BmuI	ACTGGG	1 cut(s)	654
BoxI	GACNNNNGTC	1 cut(s)	325
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	338
BsaBI	GATNNNNATC	1 cut(s)	453
BsaHI	GRCGYC	1 cut(s)	499
BsaJI	CCNNGG	6 cut(s)	13, 443, 444, 537, 581, 653
Bsc4I	CCNNNNNNNGG	4 cut(s)	231, 419, 508, 605
Bse1I	ACTGG	2 cut(s)	607, 649
Bse21I	CCTNAGG	1 cut(s)	507
Bse8I	GATNNNNATC	1 cut(s)	453
BseBI	CCWGG	2 cut(s)	14, 445
BseDI	CCNNGG	6 cut(s)	13, 443, 444, 537, 581, 653
BseJI	GATNNNNATC	1 cut(s)	453
BseLI	CCNNNNNNNGG	4 cut(s)	231, 419, 508, 605
BseMII	CTCAG	2 cut(s)	198, 352
BseNI	ACTGG	2 cut(s)	607, 649
Bsh1285I	CGRYCG	1 cut(s)	581
BshFI	GGCC	4 cut(s)	12, 224, 433, 652
BsiEI	CGRYCG	1 cut(s)	581
BsiSI	CCGG	2 cut(s)	309, 395
BslFI	GGGAC	2 cut(s)	435, 510
BslI	CCNNNNNNNGG	4 cut(s)	231, 419, 508, 605
BsmAI	GTCTC	3 cut(s)	134, 195, 409
BsmBI	CGTCTC	2 cut(s)	195, 409
BsmFI	GGGAC	2 cut(s)	435, 510
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	4 cut(s)	12, 224, 433, 652
Bsp143I	GATC	2 cut(s)	448, 454
BspACI	CCGC	3 cut(s)	185, 357, 561
BspANI	GGCC	4 cut(s)	12, 224, 433, 652
BspCNI	CTCAG	2 cut(s)	199, 351
BspLI	GGNNCC	4 cut(s)	399, 450, 513, 619
BspPI	GGATC	2 cut(s)	443, 456
BsrI	ACTGG	2 cut(s)	607, 649
BssECI	CCNNGG	6 cut(s)	13, 443, 444, 537, 581, 653
BssMI	GATC	2 cut(s)	448, 454
BssNI	GRCGYC	1 cut(s)	499
BssT1I	CCWWGG	2 cut(s)	537, 653
Bst2UI	CCWGG	2 cut(s)	14, 445
Bst4CI	ACNGT	1 cut(s)	108
Bst6I	CTCTTC	2 cut(s)	78, 165
BstACI	GRCGYC	1 cut(s)	499
BstC8I	GCNNGC	2 cut(s)	10, 306
BstDEI	CTNAG	3 cut(s)	207, 338, 507
BstENI	CCTNNNNNAGG	1 cut(s)	603
BstKTI	GATC	2 cut(s)	451, 457
BstMAI	GTCTC	3 cut(s)	134, 195, 409
BstMBI	GATC	2 cut(s)	448, 454
BstMCI	CGRYCG	1 cut(s)	581
BstMWI	GCNNNNNNNGC	1 cut(s)	498
BstNI	CCWGG	2 cut(s)	14, 445
BstPAI	GACNNNNGTC	1 cut(s)	325
BstSCI	CCNGG	2 cut(s)	12, 443
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	507
BsuRI	GGCC	4 cut(s)	12, 224, 433, 652
BtrI	CACGTC	1 cut(s)	425
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	104, 645
Cac8I	GCNNGC	2 cut(s)	10, 306
CaiI	CAGNNNCTG	2 cut(s)	149, 644
Cfr13I	GGNCC	2 cut(s)	397, 511
CseI	GACGC	1 cut(s)	507
DdeI	CTNAG	3 cut(s)	207, 338, 507
DpnI	GATC	2 cut(s)	450, 456
DpnII	GATC	2 cut(s)	448, 454
Eam1104I	CTCTTC	2 cut(s)	78, 165
EarI	CTCTTC	2 cut(s)	78, 165
Eco130I	CCWWGG	2 cut(s)	537, 653
Eco47I	GGWCC	2 cut(s)	397, 511
Eco57I	CTGAAG	3 cut(s)	189, 239, 537
Eco81I	CCTNAGG	1 cut(s)	507
EcoNI	CCTNNNNNAGG	1 cut(s)	603
EcoO109I	RGGNCCY	1 cut(s)	511
EcoRII	CCWGG	2 cut(s)	12, 443
EcoT14I	CCWWGG	2 cut(s)	537, 653
ErhI	CCWWGG	2 cut(s)	537, 653
Esp3I	CGTCTC	2 cut(s)	195, 409
FaiI	YATR	2 cut(s)	294, 629
FaqI	GGGAC	2 cut(s)	435, 510
FauI	CCCGC	1 cut(s)	554
FblI	GTMKAC	1 cut(s)	661
FspBI	CTAG	1 cut(s)	570
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	4 cut(s)	12, 224, 433, 652
HapII	CCGG	2 cut(s)	309, 395
HgaI	GACGC	1 cut(s)	507
Hin1I	GRCGYC	1 cut(s)	499
HinfI	GANTC	6 cut(s)	146, 214, 276, 284, 321, 680
HpaII	CCGG	2 cut(s)	309, 395
HphI	GGTGA	3 cut(s)	326, 371, 685
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	2 cut(s)	121, 219
Hpy188III	TCNNGA	7 cut(s)	178, 273, 318, 373, 452, 483, 555
Hpy8I	GTNNAC	1 cut(s)	662
HpyAV	CCTTC	5 cut(s)	214, 224, 423, 480, 670
HpyCH4III	ACNGT	1 cut(s)	108
HpyCH4IV	ACGT	1 cut(s)	424
HpyCH4V	TGCA	3 cut(s)	152, 521, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	498
HpyF3I	CTNAG	3 cut(s)	207, 338, 507
HpySE526I	ACGT	1 cut(s)	424
Hsp92I	GRCGYC	1 cut(s)	499
Kzo9I	GATC	2 cut(s)	448, 454
LmnI	GCTCC	1 cut(s)	623
LweI	GCATC	3 cut(s)	508, 557, 625
MaeI	CTAG	1 cut(s)	570
MaeII	ACGT	1 cut(s)	424
MaeIII	GTNAC	2 cut(s)	98, 640
MalI	GATC	2 cut(s)	450, 456
MboI	GATC	2 cut(s)	448, 454
MboII	GAAGA	5 cut(s)	95, 182, 256, 543, 598
MflI	RGATCY	1 cut(s)	448
MluCI	AATT	3 cut(s)	154, 299, 692
MlyI	GAGTC	2 cut(s)	155, 315
MseI	TTAA	2 cut(s)	158, 611
MspI	CCGG	2 cut(s)	309, 395
MspR9I	CCNGG	2 cut(s)	14, 445
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	2 cut(s)	14, 445
MwoI	GCNNNNNNNGC	1 cut(s)	498
NdeII	GATC	2 cut(s)	448, 454
NlaIV	GGNNCC	4 cut(s)	399, 450, 513, 619
NmuCI	GTSAC	2 cut(s)	98, 640
PasI	CCCWGGG	1 cut(s)	444
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	214, 276, 284, 680
PflFI	GACNNNGTC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	154, 315
PpsI	GAGTC	2 cut(s)	154, 315
PpuMI	RGGWCCY	1 cut(s)	511
PshAI	GACNNNNGTC	1 cut(s)	325
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	2 cut(s)	12, 443
PspGI	CCWGG	2 cut(s)	12, 443
PspN4I	GGNNCC	4 cut(s)	399, 450, 513, 619
PspPI	GGNCC	2 cut(s)	397, 511
PspPPI	RGGWCCY	1 cut(s)	511
PstNI	CAGNNNCTG	2 cut(s)	149, 644
PsuI	RGATCY	1 cut(s)	448
PsyI	GACNNNGTC	1 cut(s)	145
SaqAI	TTAA	2 cut(s)	158, 611
Sau3AI	GATC	2 cut(s)	448, 454
Sau96I	GGNCC	2 cut(s)	397, 511
SchI	GAGTC	2 cut(s)	155, 315
ScrFI	CCNGG	2 cut(s)	14, 445
SfaNI	GCATC	3 cut(s)	508, 557, 625
SinI	GGWCC	2 cut(s)	397, 511
Sse9I	AATT	3 cut(s)	154, 299, 692
SsiI	CCGC	3 cut(s)	185, 357, 561
SspMI	CTAG	1 cut(s)	570
StyD4I	CCNGG	2 cut(s)	12, 443
StyI	CCWWGG	2 cut(s)	537, 653
TaaI	ACNGT	1 cut(s)	108
TaiI	ACGT	1 cut(s)	427
TaqI	TCGA	2 cut(s)	228, 595
TaqII	GACCGA	1 cut(s)	595
TasI	AATT	3 cut(s)	154, 299, 692
TfiI	GAWTC	4 cut(s)	214, 276, 284, 680
Tru1I	TTAA	2 cut(s)	158, 611
Tru9I	TTAA	2 cut(s)	158, 611
TscAI	CASTG	2 cut(s)	111, 645
TseFI	GTSAC	2 cut(s)	98, 640
Tsp45I	GTSAC	2 cut(s)	98, 640
TspDTI	ATGAA	4 cut(s)	268, 362, 672, 705
TspRI	CASTG	2 cut(s)	111, 645
Tth111I	GACNNNGTC	1 cut(s)	145
VpaK11BI	GGWCC	2 cut(s)	397, 511
XagI	CCTNNNNNAGG	1 cut(s)	603
XapI	RAATTY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	661
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.