Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

1623428 .. 1624742

Gene Structure 1315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1022400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGCGATGGAGAGCTCCAACAACCCACTGGTACCGCCGCCAGCTCCCTCCCTCCCCCAGTACCCAGAGCTGATCATGGCGGCCATCGAGGCCCTGAACGACAGCAACGGGTCGAGCAAGTCGGCAATCGCGAAGCACATCGAGTCAACGTACGGCGATCTGCCGGAAACTCACGCTGCGCTCCTCGCGCACCACCTCAACATGATGAAGGACACCGGCGAGCTCGTTCTGGTCAAGAACAACTACATGAAGCCCGACCCCAACGCGCCGCCCAAGAGGGGCCGAGGCCGTCCGCCCAAGGCCAAGACCCCTCTCCCTCCTGGTACTGTCTCCTCGCCGCCCAGGCCACGCGGCAGGCCCCCGAAGCCCAGGGACCCTTTCGCTCCCCCACCGCAGCCCAAGAGCCATTCCGGAACTGGAAGGCCACGTGGCCGCCCTCCCAAGAAGGCCAAAACGACACCGTCTTCTGCTCCAGCTCCCGCTTCGGCTACCGGTGCGCCGAGAGGCAGAGGCAGGCCGCCTAAGGTCAAGCAGACCGCCGTGGCGCCAGTTGGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

187

Amino Acids

19.52

Weight (kDa)

10.62

Isoelectric Point (pI)

61.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	19 - 80	4.9e-11	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	31
AccB1I	GGYRCC	2 cut(s)	31, 544
AccII	CGCG	4 cut(s)	131, 188, 266, 351
AccIII	TCCGGA	1 cut(s)	410
AcoI	YGGCCR	2 cut(s)	81, 430
AcvI	CACGTG	1 cut(s)	428
AcyI	GRCGYC	1 cut(s)	545
AfaI	GTAC	4 cut(s)	33, 62, 152, 325
AfiI	CCNNNNNNNGG	1 cut(s)	278
AgeI	ACCGGT	1 cut(s)	491
AjnI	CCWGG	3 cut(s)	319, 341, 368
AluBI	AGCT	5 cut(s)	15, 44, 70, 223, 476
AluI	AGCT	5 cut(s)	15, 44, 70, 223, 476
Alw21I	GWGCWC	2 cut(s)	17, 225
Alw26I	GTCTC	1 cut(s)	334
Aor13HI	TCCGGA	1 cut(s)	410
ApeKI	GCWGC	2 cut(s)	176, 394
AsiGI	ACCGGT	1 cut(s)	491
Asp718I	GGTACC	1 cut(s)	31
AspLEI	GCGC	5 cut(s)	181, 190, 268, 499, 547
AspS9I	GGNCC	4 cut(s)	91, 280, 357, 373
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	522
BanI	GGYRCC	2 cut(s)	31, 544
BanII	GRGCYC	2 cut(s)	17, 225
BbrPI	CACGTG	1 cut(s)	428
BbsI	GAAGAC	1 cut(s)	456
Bbv12I	GWGCWC	2 cut(s)	17, 225
BbvI	GCAGC	2 cut(s)	163, 406
BccI	CCATC	1 cut(s)	92
BceAI	ACGGC	3 cut(s)	169, 273, 524
BciT130I	CCWGG	3 cut(s)	321, 343, 370
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	548
BglI	GCCNNNNNGGC	2 cut(s)	89, 343
BisI	GCNGC	9 cut(s)	38, 81, 177, 269, 338, 352, 395, 433, 518
BlsI	GCNGC	9 cut(s)	39, 82, 178, 270, 339, 353, 396, 434, 519
Bme1390I	CCNGG	3 cut(s)	321, 343, 370
Bme18I	GGWCC	1 cut(s)	373
BmgT120I	GGNCC	4 cut(s)	91, 280, 357, 373
BmiI	GGNNCC	6 cut(s)	33, 281, 359, 374, 375, 546
BmrFI	CCNGG	3 cut(s)	321, 343, 370
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	456
BpmI	CTGGAG	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	428
BsaHI	GRCGYC	1 cut(s)	545
BsaJI	CCNNGG	6 cut(s)	283, 297, 341, 368, 369, 540
BsaWI	WCCGGW	2 cut(s)	410, 491
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	2 cut(s)	215, 491
Bse1I	ACTGG	4 cut(s)	33, 58, 421, 548
Bse21I	CCTNAGG	1 cut(s)	522
BseAI	TCCGGA	1 cut(s)	410
BseBI	CCWGG	3 cut(s)	321, 343, 370
BseDI	CCNNGG	6 cut(s)	283, 297, 341, 368, 369, 540
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	4 cut(s)	33, 58, 421, 548
BseRI	GAGGAG	2 cut(s)	173, 322
BseXI	GCAGC	2 cut(s)	163, 406
Bsh1236I	CGCG	4 cut(s)	131, 188, 266, 351
BshNI	GGYRCC	2 cut(s)	31, 544
BshTI	ACCGGT	1 cut(s)	491
BsiHKAI	GWGCWC	2 cut(s)	17, 225
BsiSI	CCGG	4 cut(s)	164, 216, 411, 492
BsiWI	CGTACG	1 cut(s)	150
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	334
BsmFI	GGGAC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	17, 225
Bsp13I	TCCGGA	1 cut(s)	410
Bsp143I	GATC	2 cut(s)	72, 157
Bsp68I	TCGCGA	1 cut(s)	131
BspEI	TCCGGA	1 cut(s)	410
BspFNI	CGCG	4 cut(s)	131, 188, 266, 351
BspLI	GGNNCC	6 cut(s)	33, 281, 359, 374, 375, 546
BspT107I	GGYRCC	2 cut(s)	31, 544
BsrFI	RCCGGY	2 cut(s)	215, 491
BsrI	ACTGG	4 cut(s)	33, 58, 421, 548
BssAI	RCCGGY	2 cut(s)	215, 491
BssECI	CCNNGG	6 cut(s)	283, 297, 341, 368, 369, 540
BssMI	GATC	2 cut(s)	72, 157
BssNI	GRCGYC	1 cut(s)	545
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	3 cut(s)	321, 343, 370
Bst4CI	ACNGT	2 cut(s)	328, 462
BstACI	GRCGYC	1 cut(s)	545
BstBAI	YACGTR	1 cut(s)	428
BstC8I	GCNNGC	4 cut(s)	42, 221, 356, 515
BstDEI	CTNAG	1 cut(s)	522
BstDSI	CCRYGG	1 cut(s)	540
BstFNI	CGCG	4 cut(s)	131, 188, 266, 351
BstH2I	RGCGCY	1 cut(s)	548
BstHHI	GCGC	5 cut(s)	181, 190, 268, 499, 547
BstKTI	GATC	2 cut(s)	75, 160
BstMAI	GTCTC	1 cut(s)	334
BstMBI	GATC	2 cut(s)	72, 157
BstMWI	GCNNNNNNNGC	6 cut(s)	89, 185, 187, 343, 364, 494
BstNI	CCWGG	3 cut(s)	321, 343, 370
BstSCI	CCNGG	3 cut(s)	319, 341, 368
BstUI	CGCG	4 cut(s)	131, 188, 266, 351
BstV1I	GCAGC	2 cut(s)	163, 406
BstV2I	GAAGAC	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	522
BtgI	CCRYGG	1 cut(s)	540
BtgZI	GCGATG	1 cut(s)	20
BtsIMutI	CAGTG	1 cut(s)	26
BtuMI	TCGCGA	1 cut(s)	131
Cac8I	GCNNGC	4 cut(s)	42, 221, 356, 515
CfoI	GCGC	5 cut(s)	181, 190, 268, 499, 547
Cfr10I	RCCGGY	2 cut(s)	215, 491
Cfr13I	GGNCC	4 cut(s)	91, 280, 357, 373
Csp6I	GTAC	4 cut(s)	32, 61, 151, 324
CspAI	ACCGGT	1 cut(s)	491
CviAII	CATG	3 cut(s)	76, 202, 247
CviQI	GTAC	4 cut(s)	32, 61, 151, 324
DdeI	CTNAG	1 cut(s)	522
DinI	GGCGCC	1 cut(s)	546
DpnI	GATC	2 cut(s)	74, 159
DpnII	GATC	2 cut(s)	72, 157
EaeI	YGGCCR	2 cut(s)	81, 430
EciI	GGCGGA	1 cut(s)	282
Ecl136II	GAGCTC	2 cut(s)	15, 223
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	17, 225
Eco47I	GGWCC	1 cut(s)	373
Eco53kI	GAGCTC	2 cut(s)	15, 223
Eco72I	CACGTG	1 cut(s)	428
Eco81I	CCTNAGG	1 cut(s)	522
EcoICRI	GAGCTC	2 cut(s)	15, 223
EcoO109I	RGGNCCY	3 cut(s)	91, 357, 373
EcoRII	CCWGG	3 cut(s)	319, 341, 368
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	2 cut(s)	17, 225
EgeI	GGCGCC	1 cut(s)	546
EheI	GGCGCC	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	79, 205, 250
FaiI	YATR	3 cut(s)	77, 203, 248
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	3 cut(s)	75, 201, 246
FauI	CCCGC	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	9 cut(s)	38, 81, 177, 269, 338, 352, 395, 433, 518
FriOI	GRGCYC	2 cut(s)	17, 225
Fsp4HI	GCNGC	9 cut(s)	38, 81, 177, 269, 338, 352, 395, 433, 518
GlaI	GCGC	5 cut(s)	180, 189, 267, 498, 546
GluI	GCNGC	9 cut(s)	38, 81, 177, 269, 338, 352, 395, 433, 518
GsuI	CTGGAG	1 cut(s)	456
HaeII	RGCGCY	1 cut(s)	548
HapII	CCGG	4 cut(s)	164, 216, 411, 492
HhaI	GCGC	5 cut(s)	181, 190, 268, 499, 547
Hin1I	GRCGYC	1 cut(s)	545
Hin1II	CATG	3 cut(s)	79, 205, 250
Hin6I	GCGC	5 cut(s)	179, 188, 266, 497, 545
HinP1I	GCGC	5 cut(s)	179, 188, 266, 497, 545
HincII	GTYRAC	1 cut(s)	147
HindII	GTYRAC	1 cut(s)	147
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	4 cut(s)	164, 216, 411, 492
Hpy166II	GTNNAC	1 cut(s)	147
Hpy188III	TCNNGA	3 cut(s)	130, 235, 411
Hpy8I	GTNNAC	1 cut(s)	147
HpyAV	CCTTC	3 cut(s)	202, 414, 439
HpyCH4III	ACNGT	2 cut(s)	328, 462
HpyCH4IV	ACGT	2 cut(s)	149, 427
HpyF10VI	GCNNNNNNNGC	6 cut(s)	89, 185, 187, 343, 364, 494
HpyF3I	CTNAG	1 cut(s)	522
HpySE526I	ACGT	2 cut(s)	149, 427
Hsp92I	GRCGYC	1 cut(s)	545
Hsp92II	CATG	3 cut(s)	79, 205, 250
HspAI	GCGC	5 cut(s)	179, 188, 266, 497, 545
KasI	GGCGCC	1 cut(s)	544
KflI	GGGWCCC	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	410
KpnI	GGTACC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	2 cut(s)	72, 157
LmnI	GCTCC	6 cut(s)	20, 49, 186, 388, 475, 481
Lsp1109I	GCAGC	2 cut(s)	163, 406
MaeII	ACGT	2 cut(s)	149, 427
MalI	GATC	2 cut(s)	74, 159
MboI	GATC	2 cut(s)	72, 157
MboII	GAAGA	1 cut(s)	456
MhlI	GDGCHC	2 cut(s)	17, 225
Mly113I	GGCGCC	1 cut(s)	545
MlyI	GAGTC	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	410
MspI	CCGG	4 cut(s)	164, 216, 411, 492
MspR9I	CCNGG	3 cut(s)	321, 343, 370
MvaI	CCWGG	3 cut(s)	321, 343, 370
MvnI	CGCG	4 cut(s)	131, 188, 266, 351
MwoI	GCNNNNNNNGC	6 cut(s)	89, 185, 187, 343, 364, 494
NarI	GGCGCC	1 cut(s)	545
NdeII	GATC	2 cut(s)	72, 157
NlaIII	CATG	3 cut(s)	79, 205, 250
NlaIV	GGNNCC	6 cut(s)	33, 281, 359, 374, 375, 546
NmeAIII	GCCGAG	2 cut(s)	308, 525
NruI	TCGCGA	1 cut(s)	131
PasI	CCCWGGG	1 cut(s)	369
PcsI	WCGNNNNNNNCGW	1 cut(s)	128
Pfl23II	CGTACG	1 cut(s)	150
PflFI	GACNNNGTC	1 cut(s)	460
PinAI	ACCGGT	1 cut(s)	491
PkrI	GCNGC	9 cut(s)	39, 82, 178, 270, 339, 353, 396, 434, 519
PleI	GAGTC	1 cut(s)	151
PluTI	GGCGCC	1 cut(s)	548
PmaCI	CACGTG	1 cut(s)	428
PmlI	CACGTG	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	428
PpuMI	RGGWCCY	1 cut(s)	373
Psp124BI	GAGCTC	2 cut(s)	17, 225
Psp5II	RGGWCCY	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	319, 341, 368
PspCI	CACGTG	1 cut(s)	428
PspGI	CCWGG	3 cut(s)	319, 341, 368
PspLI	CGTACG	1 cut(s)	150
PspN4I	GGNNCC	6 cut(s)	33, 281, 359, 374, 375, 546
PspPI	GGNCC	4 cut(s)	91, 280, 357, 373
PspPPI	RGGWCCY	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	460
RruI	TCGCGA	1 cut(s)	131
RsaI	GTAC	4 cut(s)	33, 62, 152, 325
RsaNI	GTAC	4 cut(s)	32, 61, 151, 324
SacI	GAGCTC	2 cut(s)	17, 225
SatI	GCNGC	9 cut(s)	38, 81, 177, 269, 338, 352, 395, 433, 518
Sau3AI	GATC	2 cut(s)	72, 157
Sau96I	GGNCC	4 cut(s)	91, 280, 357, 373
SchI	GAGTC	1 cut(s)	152
ScrFI	CCNGG	3 cut(s)	321, 343, 370
SduI	GDGCHC	2 cut(s)	17, 225
SetI	ASST	9 cut(s)	17, 46, 72, 152, 198, 225, 430, 478, 528
SfiI	GGCCNNNNNGGCC	1 cut(s)	89
SfoI	GGCGCC	1 cut(s)	546
SgrAI	CRCCGGYG	1 cut(s)	215
SinI	GGWCC	1 cut(s)	373
SspDI	GGCGCC	1 cut(s)	544
SstI	GAGCTC	2 cut(s)	17, 225
StyD4I	CCNGG	3 cut(s)	319, 341, 368
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	2 cut(s)	328, 462
TaiI	ACGT	2 cut(s)	152, 430
TaqI	TCGA	3 cut(s)	87, 113, 141
TauI	GCSGC	7 cut(s)	40, 83, 271, 340, 354, 435, 520
TscAI	CASTG	1 cut(s)	33
TseI	GCWGC	2 cut(s)	176, 394
TspDTI	ATGAA	2 cut(s)	221, 263
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	373
XcmI	CCANNNNNNNNNTGG	2 cut(s)	25, 413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.