Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

13493310 .. 13494339

Gene Structure 1030 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g10240.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGGTAGCCCTATCTTCGGTGGTTATTTTCCAGTCCGAAACCCCAACTTCCCCTCCGCCATTTCACCGATCCGCGTGACTCTTATCAACTCATTTTCCACCGCCAGATTGCACACACAACCGCCGTCCCTGACCATCGGATCGCACTCCGGAGGTCATCCTCCTCCTTTAGAAAACCCACCATTTAAATTCATGCTCTCTTTCATTTCCTTCTCTGCATCTCACTCTCTCCCAGACTCAAGTCTTCGTTTACAGAGAGAGCTCTCATGGCCACCACTGAGTCCTCCAACGACGCACCGGCACCGGCGAATCCAGCTCCTTCTGGCGCAGCACCTCGAGAAGATGAAGCAGAGCGGCGAGCTCGCTTTTGTGAAGACCAACTACATGAAGCCTGATCCCAACGCGCCGCCCAAGCGCGGCTGTGGCCGTCCTCCCAAGCCGAAGGTCCCGGGGGCTGAAGGAGCTGCTGCCGTGGTTTCCTCGCCTCCGAGGCCACGTGACAGGCCTCCCAAGGCTAAGGATCCATTTTTCCCCACTCCGATTGTCCAGAGCTCGACCTCGGGAGGAGGGTCAGGCAGGCCACGTGGCCATCCTCCGAAGAAGGCCAAGACTGCTCCGGCGAGTGGTGGTGGTAGTGGTGCTCATAGAGGGAGAGGCAGGCCACCGAAAGTGAAGCCCTCCTTGGCTCCTGTGGGTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

234

Amino Acids

24.81

Weight (kDa)

11.52

Isoelectric Point (pI)

55.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	300
AccBSI	CCGCTC	1 cut(s)	354
AccII	CGCG	3 cut(s)	75, 404, 417
AccIII	TCCGGA	1 cut(s)	149
AciI	CCGC	7 cut(s)	57, 73, 102, 122, 354, 407, 417
AclWI	GGATC	5 cut(s)	64, 148, 389, 515, 528
AcoI	YGGCCR	3 cut(s)	269, 424, 586
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	477
AcvI	CACGTG	2 cut(s)	497, 584
AfiI	CCNNNNNNNGG	3 cut(s)	17, 416, 623
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	5 cut(s)	262, 316, 361, 464, 552
AluI	AGCT	5 cut(s)	262, 316, 361, 464, 552
Alw21I	GWGCWC	4 cut(s)	264, 363, 554, 643
AlwI	GGATC	5 cut(s)	64, 148, 389, 515, 528
Ama87I	CYCGRG	3 cut(s)	335, 448, 559
Aor13HI	TCCGGA	1 cut(s)	149
AoxI	GGCC	8 cut(s)	269, 424, 491, 503, 578, 586, 603, 659
ApeKI	GCWGC	3 cut(s)	328, 464, 467
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	3 cut(s)	328, 406, 417
AspS9I	GGNCC	1 cut(s)	445
AsuC2I	CCSGG	2 cut(s)	449, 450
AsuHPI	GGTGA	1 cut(s)	57
AvaI	CYCGRG	3 cut(s)	335, 448, 559
AvaII	GGWCC	1 cut(s)	445
BalI	TGGCCA	2 cut(s)	271, 588
BamHI	GGATCC	1 cut(s)	520
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	3 cut(s)	264, 363, 554
BarI	GAAGNNNNNNTAC	2 cut(s)	365, 397
BbrPI	CACGTG	2 cut(s)	497, 584
BbsI	GAAGAC	2 cut(s)	236, 380
Bbv12I	GWGCWC	4 cut(s)	264, 363, 554, 643
BbvI	GCAGC	3 cut(s)	340, 451, 454
BccI	CCATC	2 cut(s)	143, 597
BceAI	ACGGC	3 cut(s)	109, 411, 455
BcnI	CCSGG	2 cut(s)	449, 450
BglI	GCCNNNNNGGC	1 cut(s)	490
BisI	GCNGC	6 cut(s)	329, 355, 407, 418, 465, 468
BlsI	GCNGC	6 cut(s)	330, 356, 408, 419, 466, 469
Bme1390I	CCNGG	2 cut(s)	449, 450
Bme18I	GGWCC	1 cut(s)	445
BmeT110I	CYCGRG	3 cut(s)	335, 448, 559
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	4 cut(s)	302, 447, 522, 687
BmrFI	CCNGG	2 cut(s)	449, 450
BmsI	GCATC	1 cut(s)	227
BoxI	GACNNNNGTC	1 cut(s)	240
BpiI	GAAGAC	2 cut(s)	236, 380
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	223
BpuMI	CCSGG	2 cut(s)	449, 450
BsaAI	YACGTR	2 cut(s)	497, 584
BsaJI	CCNNGG	7 cut(s)	448, 449, 471, 488, 510, 558, 681
BsaWI	WCCGGW	1 cut(s)	149
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 416, 623
Bse118I	RCCGGY	2 cut(s)	297, 303
Bse1I	ACTGG	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	149
BseDI	CCNNGG	7 cut(s)	448, 449, 471, 488, 510, 558, 681
BseGI	GGATG	2 cut(s)	157, 589
BseLI	CCNNNNNNNGG	3 cut(s)	17, 416, 623
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	153, 579
BseXI	GCAGC	3 cut(s)	340, 451, 454
Bsh1236I	CGCG	3 cut(s)	75, 404, 417
BshFI	GGCC	8 cut(s)	271, 426, 493, 505, 580, 588, 605, 661
BshNI	GGYRCC	1 cut(s)	300
BsiHKAI	GWGCWC	4 cut(s)	264, 363, 554, 643
BsiHKCI	CYCGRG	3 cut(s)	335, 448, 559
BsiSI	CCGG	5 cut(s)	150, 298, 304, 449, 617
BslFI	GGGAC	2 cut(s)	112, 431
BslI	CCNNNNNNNGG	3 cut(s)	17, 416, 623
BsmFI	GGGAC	2 cut(s)	112, 431
BsnI	GGCC	8 cut(s)	271, 426, 493, 505, 580, 588, 605, 661
BsoBI	CYCGRG	3 cut(s)	335, 448, 559
Bsp1286I	GDGCHC	4 cut(s)	264, 363, 554, 643
Bsp13I	TCCGGA	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	69, 140, 394, 520
BspACI	CCGC	7 cut(s)	57, 73, 102, 122, 354, 407, 417
BspANI	GGCC	8 cut(s)	271, 426, 493, 505, 580, 588, 605, 661
BspCNI	CTCAG	1 cut(s)	270
BspEI	TCCGGA	1 cut(s)	149
BspFNI	CGCG	3 cut(s)	75, 404, 417
BspLI	GGNNCC	4 cut(s)	302, 447, 522, 687
BspPI	GGATC	5 cut(s)	64, 148, 389, 515, 528
BspT107I	GGYRCC	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	354
BsrFI	RCCGGY	2 cut(s)	297, 303
BsrI	ACTGG	1 cut(s)	32
BssAI	RCCGGY	2 cut(s)	297, 303
BssECI	CCNNGG	7 cut(s)	448, 449, 471, 488, 510, 558, 681
BssMI	GATC	4 cut(s)	69, 140, 394, 520
BssT1I	CCWWGG	2 cut(s)	510, 681
BstBAI	YACGTR	2 cut(s)	497, 584
BstC8I	GCNNGC	4 cut(s)	359, 363, 578, 659
BstDEI	CTNAG	2 cut(s)	278, 516
BstDSI	CCRYGG	1 cut(s)	471
BstF5I	GGATG	2 cut(s)	157, 589
BstFNI	CGCG	3 cut(s)	75, 404, 417
BstHHI	GCGC	3 cut(s)	328, 406, 417
BstKTI	GATC	4 cut(s)	72, 143, 397, 523
BstMBI	GATC	4 cut(s)	69, 140, 394, 520
BstMWI	GCNNNNNNNGC	7 cut(s)	268, 313, 412, 423, 461, 490, 611
BstPAI	GACNNNNGTC	1 cut(s)	240
BstSCI	CCNGG	2 cut(s)	447, 448
BstUI	CGCG	3 cut(s)	75, 404, 417
BstV1I	GCAGC	3 cut(s)	340, 451, 454
BstV2I	GAAGAC	2 cut(s)	236, 380
BstX2I	RGATCY	1 cut(s)	520
BstYI	RGATCY	1 cut(s)	520
BsuRI	GGCC	8 cut(s)	271, 426, 493, 505, 580, 588, 605, 661
BtgI	CCRYGG	1 cut(s)	471
BtsCI	GGATG	2 cut(s)	157, 589
BtsIMutI	CAGTG	1 cut(s)	275
Cac8I	GCNNGC	4 cut(s)	359, 363, 578, 659
CfoI	GCGC	3 cut(s)	328, 406, 417
Cfr10I	RCCGGY	2 cut(s)	297, 303
Cfr13I	GGNCC	1 cut(s)	445
Cfr9I	CCCGGG	1 cut(s)	448
CseI	GACGC	1 cut(s)	301
CspCI	CAANNNNNGTGG	2 cut(s)	523, 558
CviAII	CATG	3 cut(s)	193, 267, 385
DdeI	CTNAG	2 cut(s)	278, 516
DpnI	GATC	4 cut(s)	71, 142, 396, 522
DpnII	GATC	4 cut(s)	69, 140, 394, 520
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	3 cut(s)	269, 424, 586
EciI	GGCGGA	1 cut(s)	46
Ecl136II	GAGCTC	3 cut(s)	262, 361, 552
Eco130I	CCWWGG	2 cut(s)	510, 681
Eco147I	AGGCCT	1 cut(s)	505
Eco24I	GRGCYC	3 cut(s)	264, 363, 554
Eco47I	GGWCC	1 cut(s)	445
Eco53kI	GAGCTC	3 cut(s)	262, 361, 552
Eco57I	CTGAAG	1 cut(s)	477
Eco72I	CACGTG	2 cut(s)	497, 584
Eco88I	CYCGRG	3 cut(s)	335, 448, 559
EcoICRI	GAGCTC	3 cut(s)	262, 361, 552
EcoO109I	RGGNCCY	1 cut(s)	445
EcoT14I	CCWWGG	2 cut(s)	510, 681
EcoT38I	GRGCYC	3 cut(s)	264, 363, 554
ErhI	CCWWGG	2 cut(s)	510, 681
FaeI	CATG	3 cut(s)	196, 270, 388
FaiI	YATR	4 cut(s)	194, 268, 386, 645
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FaqI	GGGAC	2 cut(s)	112, 431
FatI	CATG	3 cut(s)	192, 266, 384
Fnu4HI	GCNGC	6 cut(s)	329, 355, 407, 418, 465, 468
FokI	GGATG	2 cut(s)	144, 576
FriOI	GRGCYC	3 cut(s)	264, 363, 554
Fsp4HI	GCNGC	6 cut(s)	329, 355, 407, 418, 465, 468
GlaI	GCGC	3 cut(s)	327, 405, 416
GluI	GCNGC	6 cut(s)	329, 355, 407, 418, 465, 468
HaeIII	GGCC	8 cut(s)	271, 426, 493, 505, 580, 588, 605, 661
HapII	CCGG	5 cut(s)	150, 298, 304, 449, 617
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	3 cut(s)	328, 406, 417
Hin1II	CATG	3 cut(s)	196, 270, 388
Hin6I	GCGC	3 cut(s)	326, 404, 415
HinP1I	GCGC	3 cut(s)	326, 404, 415
HinfI	GANTC	4 cut(s)	79, 236, 280, 309
HpaII	CCGG	5 cut(s)	150, 298, 304, 449, 617
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	251
Hpy188I	TCNGA	5 cut(s)	38, 140, 489, 540, 597
Hpy188III	TCNNGA	4 cut(s)	150, 337, 547, 561
Hpy8I	GTNNAC	1 cut(s)	251
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	5 cut(s)	220, 329, 436, 452, 595
HpyCH4IV	ACGT	2 cut(s)	496, 583
HpyCH4V	TGCA	2 cut(s)	112, 218
HpyF10VI	GCNNNNNNNGC	7 cut(s)	268, 313, 412, 423, 461, 490, 611
HpyF3I	CTNAG	2 cut(s)	278, 516
HpySE526I	ACGT	2 cut(s)	496, 583
Hsp92II	CATG	3 cut(s)	196, 270, 388
HspAI	GCGC	3 cut(s)	326, 404, 415
Kpn2I	TCCGGA	1 cut(s)	149
Kzo9I	GATC	4 cut(s)	69, 140, 394, 520
LmnI	GCTCC	4 cut(s)	321, 461, 619, 691
Lsp1109I	GCAGC	3 cut(s)	340, 451, 454
LweI	GCATC	1 cut(s)	227
MaeII	ACGT	2 cut(s)	496, 583
MaeIII	GTNAC	2 cut(s)	76, 497
MalI	GATC	4 cut(s)	71, 142, 396, 522
MbiI	CCGCTC	1 cut(s)	354
MboI	GATC	4 cut(s)	69, 140, 394, 520
MboII	GAAGA	5 cut(s)	7, 236, 352, 385, 610
MflI	RGATCY	1 cut(s)	520
MhlI	GDGCHC	4 cut(s)	264, 363, 554, 643
MlsI	TGGCCA	2 cut(s)	271, 588
MluCI	AATT	1 cut(s)	188
MluNI	TGGCCA	2 cut(s)	271, 588
MlyI	GAGTC	3 cut(s)	73, 230, 289
MmeI	TCCRAC	1 cut(s)	311
Mox20I	TGGCCA	2 cut(s)	271, 588
MroI	TCCGGA	1 cut(s)	149
MscI	TGGCCA	2 cut(s)	271, 588
MseI	TTAA	1 cut(s)	186
Msp20I	TGGCCA	2 cut(s)	271, 588
MspI	CCGG	5 cut(s)	150, 298, 304, 449, 617
MspR9I	CCNGG	2 cut(s)	449, 450
MvnI	CGCG	3 cut(s)	75, 404, 417
MwoI	GCNNNNNNNGC	7 cut(s)	268, 313, 412, 423, 461, 490, 611
NciI	CCSGG	2 cut(s)	449, 450
NdeII	GATC	4 cut(s)	69, 140, 394, 520
NlaIII	CATG	3 cut(s)	196, 270, 388
NlaIV	GGNNCC	4 cut(s)	302, 447, 522, 687
NmuCI	GTSAC	2 cut(s)	76, 497
PaeR7I	CTCGAG	1 cut(s)	335
PceI	AGGCCT	1 cut(s)	505
PfeI	GAWTC	1 cut(s)	309
PkrI	GCNGC	6 cut(s)	330, 356, 408, 419, 466, 469
PleI	GAGTC	3 cut(s)	73, 230, 288
PmaCI	CACGTG	2 cut(s)	497, 584
PmlI	CACGTG	2 cut(s)	497, 584
PpsI	GAGTC	3 cut(s)	73, 230, 288
Ppu21I	YACGTR	2 cut(s)	497, 584
PpuMI	RGGWCCY	1 cut(s)	445
PshAI	GACNNNNGTC	1 cut(s)	240
Psp124BI	GAGCTC	3 cut(s)	264, 363, 554
Psp5II	RGGWCCY	1 cut(s)	445
PspCI	CACGTG	2 cut(s)	497, 584
PspN4I	GGNNCC	4 cut(s)	302, 447, 522, 687
PspPI	GGNCC	1 cut(s)	445
PspPPI	RGGWCCY	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	520
SacI	GAGCTC	3 cut(s)	264, 363, 554
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	6 cut(s)	329, 355, 407, 418, 465, 468
Sau3AI	GATC	4 cut(s)	69, 140, 394, 520
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	3 cut(s)	73, 230, 289
ScrFI	CCNGG	2 cut(s)	449, 450
SduI	GDGCHC	4 cut(s)	264, 363, 554, 643
SfaNI	GCATC	1 cut(s)	227
Sfr274I	CTCGAG	1 cut(s)	335
SgrAI	CRCCGGYG	1 cut(s)	303
SinI	GGWCC	1 cut(s)	445
SlaI	CTCGAG	1 cut(s)	335
SmaI	CCCGGG	1 cut(s)	450
SmiI	ATTTAAAT	1 cut(s)	187
SmlI	CTYRAG	2 cut(s)	238, 335
SmoI	CTYRAG	2 cut(s)	238, 335
Sse9I	AATT	1 cut(s)	188
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	7 cut(s)	57, 73, 102, 122, 354, 407, 417
SstI	GAGCTC	3 cut(s)	264, 363, 554
StuI	AGGCCT	1 cut(s)	505
StyD4I	CCNGG	2 cut(s)	447, 448
StyI	CCWWGG	2 cut(s)	510, 681
SwaI	ATTTAAAT	1 cut(s)	187
TaiI	ACGT	2 cut(s)	499, 586
TaqI	TCGA	2 cut(s)	336, 554
TasI	AATT	1 cut(s)	188
TauI	GCSGC	3 cut(s)	357, 409, 420
TfiI	GAWTC	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	2 cut(s)	76, 497
TseI	GCWGC	3 cut(s)	328, 464, 467
Tsp45I	GTSAC	2 cut(s)	76, 497
TspDTI	ATGAA	4 cut(s)	181, 193, 359, 401
TspMI	CCCGGG	1 cut(s)	448
TspRI	CASTG	1 cut(s)	282
VpaK11BI	GGWCC	1 cut(s)	445
XapI	RAATTY	1 cut(s)	188
XhoI	CTCGAG	1 cut(s)	335
XmaI	CCCGGG	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.