Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

37528065 .. 37528598

Gene Structure 534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG344600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGAGGGGAATGTCTGAGTTTGTTGTATTTCAGATGATTCTGAAGGCCATCGAAGGGTTGAATGAGAAGAATGGCTCAAACAAGTCGTCAATATCAAGATTCATCGAATCAACTTATGGGGAATTGCCAGCCGGACACTCTGGACTCCTGTCTAATCACCTCAGCAAAATGAAAGATAGCGGTGAGTTGGTGTTCTGGAAAAACAACTACACAAAGCCGGACCCAAATGCCCCACCGAGACGGGGACGTGGGAGGCCACCAAAACCCAGGGATCCAGATCAGCCACAGGTTGCTAACTTGCCATCAGGAAGGGGCAGGGGACGCCCACCTAAGGACCCTGATGCACCCCCAAGACCTCCCAAGGTCAAGGCATCTTCAGGGAGCGGGAAACCTAGAGGACGACCGAGGAAGATGGCTCGGCCTACTGGAGGTTTAAGTGGCTCGACAACCATAACAGATGCAGTGACTGGGAGGCCAAGGGGTAGACCTCCAAAGGTGAAGGATTCATTGAATGAATTGAGCATTCAGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0008150 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0051239 GO:0065007 GO:0070013 GO:0080050 GO:0097159 GO:1901363 GO:2000014 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

177

Amino Acids

19.21

Weight (kDa)

10.99

Isoelectric Point (pI)

44.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	10 - 67	2.1e-07	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	384
AccI	GTMKAC	1 cut(s)	484
AciI	CCGC	2 cut(s)	180, 384
AclWI	GGATC	2 cut(s)	266, 279
AcuI	CTGAAG	2 cut(s)	62, 360
AcyI	GRCGYC	1 cut(s)	322
AfiI	CCNNNNNNNGG	4 cut(s)	54, 242, 331, 428
AgsI	TTSAA	2 cut(s)	61, 511
AjiI	CACGTC	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	266
Alw26I	GTCTC	1 cut(s)	232
AlwI	GGATC	2 cut(s)	266, 279
AlwNI	CAGNNNCTG	1 cut(s)	467
AoxI	GGCC	4 cut(s)	45, 254, 419, 473
ArsI	GACNNNNNNTTYG	2 cut(s)	71, 103
AspS9I	GGNCC	2 cut(s)	220, 334
AsuHPI	GGTGA	3 cut(s)	149, 194, 508
AvaII	GGWCC	2 cut(s)	220, 334
AxyI	CCTNAGG	1 cut(s)	330
BamHI	GGATCC	1 cut(s)	271
BbvCI	CCTCAGC	1 cut(s)	161
BccI	CCATC	3 cut(s)	56, 310, 406
BciT130I	CCWGG	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	393
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	220, 334
BmgBI	CACGTC	1 cut(s)	248
BmgT120I	GGNCC	2 cut(s)	220, 334
BmiI	GGNNCC	3 cut(s)	222, 273, 336
BmrFI	CCNGG	1 cut(s)	268
BmrI	ACTGGG	1 cut(s)	477
BmsI	GCATC	3 cut(s)	331, 380, 448
BmuI	ACTGGG	1 cut(s)	477
BoxI	GACNNNNGTC	1 cut(s)	148
BpmI	CTGGAG	1 cut(s)	447
Bpu10I	CCTNAGC	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	322
BsaJI	CCNNGG	5 cut(s)	266, 267, 360, 404, 476
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 242, 331, 428
Bse1I	ACTGG	2 cut(s)	430, 472
Bse21I	CCTNAGG	1 cut(s)	330
Bse8I	GATNNNNATC	1 cut(s)	276
BseBI	CCWGG	1 cut(s)	268
BseDI	CCNNGG	5 cut(s)	266, 267, 360, 404, 476
BseJI	GATNNNNATC	1 cut(s)	276
BseLI	CCNNNNNNNGG	4 cut(s)	54, 242, 331, 428
BseMII	CTCAG	2 cut(s)	6, 175
BseNI	ACTGG	2 cut(s)	430, 472
Bsh1285I	CGRYCG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	47, 256, 421, 475
BsiEI	CGRYCG	1 cut(s)	404
BsiSI	CCGG	2 cut(s)	132, 218
BslFI	GGGAC	2 cut(s)	258, 333
BslI	CCNNNNNNNGG	4 cut(s)	54, 242, 331, 428
BsmAI	GTCTC	1 cut(s)	232
BsmBI	CGTCTC	1 cut(s)	232
BsmFI	GGGAC	2 cut(s)	258, 333
BsmI	GAATGC	1 cut(s)	522
BsnI	GGCC	4 cut(s)	47, 256, 421, 475
Bsp143I	GATC	2 cut(s)	271, 277
BspACI	CCGC	2 cut(s)	180, 384
BspANI	GGCC	4 cut(s)	47, 256, 421, 475
BspCNI	CTCAG	2 cut(s)	7, 174
BspLI	GGNNCC	3 cut(s)	222, 273, 336
BspPI	GGATC	2 cut(s)	266, 279
BsrBI	CCGCTC	1 cut(s)	384
BsrI	ACTGG	2 cut(s)	430, 472
BssECI	CCNNGG	5 cut(s)	266, 267, 360, 404, 476
BssMI	GATC	2 cut(s)	271, 277
BssNI	GRCGYC	1 cut(s)	322
BssT1I	CCWWGG	2 cut(s)	360, 476
Bst2UI	CCWGG	1 cut(s)	268
BstACI	GRCGYC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	129
BstDEI	CTNAG	3 cut(s)	15, 161, 330
BstENI	CCTNNNNNAGG	1 cut(s)	426
BstKTI	GATC	2 cut(s)	274, 280
BstMAI	GTCTC	1 cut(s)	232
BstMBI	GATC	2 cut(s)	271, 277
BstMCI	CGRYCG	1 cut(s)	404
BstMWI	GCNNNNNNNGC	1 cut(s)	321
BstNI	CCWGG	1 cut(s)	268
BstPAI	GACNNNNGTC	1 cut(s)	148
BstSCI	CCNGG	1 cut(s)	266
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
Bsu36I	CCTNAGG	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	47, 256, 421, 475
BtrI	CACGTC	1 cut(s)	248
BtsI	GCAGTG	1 cut(s)	468
BtsIMutI	CAGTG	1 cut(s)	468
Cac8I	GCNNGC	1 cut(s)	129
CaiI	CAGNNNCTG	1 cut(s)	467
Cfr13I	GGNCC	2 cut(s)	220, 334
CseI	GACGC	1 cut(s)	330
DdeI	CTNAG	3 cut(s)	15, 161, 330
DpnI	GATC	2 cut(s)	273, 279
DpnII	GATC	2 cut(s)	271, 277
Eco130I	CCWWGG	2 cut(s)	360, 476
Eco47I	GGWCC	2 cut(s)	220, 334
Eco57I	CTGAAG	2 cut(s)	62, 360
Eco81I	CCTNAGG	1 cut(s)	330
EcoNI	CCTNNNNNAGG	1 cut(s)	426
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	360, 476
ErhI	CCWWGG	2 cut(s)	360, 476
Esp3I	CGTCTC	1 cut(s)	232
FaiI	YATR	2 cut(s)	117, 452
FaqI	GGGAC	2 cut(s)	258, 333
FauI	CCCGC	1 cut(s)	377
FblI	GTMKAC	1 cut(s)	484
FspBI	CTAG	1 cut(s)	393
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	4 cut(s)	47, 256, 421, 475
HapII	CCGG	2 cut(s)	132, 218
HgaI	GACGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	37, 99, 107, 144, 503
HpaII	CCGG	2 cut(s)	132, 218
HphI	GGTGA	3 cut(s)	149, 194, 508
Hpy166II	GTNNAC	1 cut(s)	485
Hpy188I	TCNGA	3 cut(s)	16, 33, 42
Hpy188III	TCNNGA	5 cut(s)	96, 141, 196, 275, 306
Hpy8I	GTNNAC	1 cut(s)	485
HpyAV	CCTTC	4 cut(s)	37, 47, 303, 493
HpyCH4IV	ACGT	1 cut(s)	247
HpyCH4V	TGCA	2 cut(s)	344, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	321
HpyF3I	CTNAG	3 cut(s)	15, 161, 330
HpySE526I	ACGT	1 cut(s)	247
Hsp92I	GRCGYC	1 cut(s)	322
Kzo9I	GATC	2 cut(s)	271, 277
LmnI	GCTCC	1 cut(s)	381
LweI	GCATC	3 cut(s)	331, 380, 448
MaeI	CTAG	1 cut(s)	393
MaeII	ACGT	1 cut(s)	247
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	273, 279
MbiI	CCGCTC	1 cut(s)	384
MboI	GATC	2 cut(s)	271, 277
MboII	GAAGA	3 cut(s)	79, 366, 421
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	2 cut(s)	122, 515
MlyI	GAGTC	1 cut(s)	138
MnlI	CCTC	8 cut(s)	170, 246, 366, 389, 399, 422, 465, 498
MseI	TTAA	1 cut(s)	434
MspI	CCGG	2 cut(s)	132, 218
MspR9I	CCNGG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	522
MvaI	CCWGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	1 cut(s)	321
NdeII	GATC	2 cut(s)	271, 277
NlaIV	GGNNCC	3 cut(s)	222, 273, 336
NmeAIII	GCCGAG	1 cut(s)	397
NmuCI	GTSAC	1 cut(s)	463
PasI	CCCWGGG	1 cut(s)	267
PctI	GAATGC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	37, 99, 107, 503
PleI	GAGTC	1 cut(s)	138
PpsI	GAGTC	1 cut(s)	138
PpuMI	RGGWCCY	1 cut(s)	334
PshAI	GACNNNNGTC	1 cut(s)	148
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	266
PspN4I	GGNNCC	3 cut(s)	222, 273, 336
PspPI	GGNCC	2 cut(s)	220, 334
PspPPI	RGGWCCY	1 cut(s)	334
PstNI	CAGNNNCTG	1 cut(s)	467
PsuI	RGATCY	1 cut(s)	271
SaqAI	TTAA	1 cut(s)	434
Sau3AI	GATC	2 cut(s)	271, 277
Sau96I	GGNCC	2 cut(s)	220, 334
SchI	GAGTC	1 cut(s)	138
ScrFI	CCNGG	1 cut(s)	268
SfaNI	GCATC	3 cut(s)	331, 380, 448
SinI	GGWCC	2 cut(s)	220, 334
Sse9I	AATT	2 cut(s)	122, 515
SsiI	CCGC	2 cut(s)	180, 384
SspMI	CTAG	1 cut(s)	393
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	2 cut(s)	360, 476
TaiI	ACGT	1 cut(s)	250
TaqI	TCGA	3 cut(s)	51, 105, 443
TaqII	GACCGA	1 cut(s)	418
TasI	AATT	2 cut(s)	122, 515
TfiI	GAWTC	4 cut(s)	37, 99, 107, 503
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	1 cut(s)	468
TseFI	GTSAC	1 cut(s)	463
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	4 cut(s)	91, 185, 495, 528
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	2 cut(s)	220, 334
XagI	CCTNNNNNAGG	1 cut(s)	426
XmiI	GTMKAC	1 cut(s)	484
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.