Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Reverse (-)

72336175 .. 72336402

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG502700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGCCACCGAGGAGTCCAACGAGCAACCGCCACCGTCGCCGGCACCGCCTAATCCGGCTCTGTCCCTCCCTGAGTACCCAAAGATGATTATGGCGGCGATTGAGGCGCTTAATGAGAGCGAGGGGTCGAACAAGACCTCAATTGCGCAGCAAATCGAGTCCACCTACGGCGAGCTGCCGCTGGCTCATGCCACGCTTCTGGCGCACCACCTCAACAAGATGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

75

Amino Acids

8.08

Weight (kDa)

4.94

Isoelectric Point (pI)

92.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Linker_histone	PF00538	24 - 73	1.1e-06	linker histone H1 and H5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	43
AciI	CCGC	4 cut(s)	29, 47, 95, 179
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	77
AluBI	AGCT	1 cut(s)	175
AluI	AGCT	1 cut(s)	175
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	148, 175
AspLEI	GCGC	3 cut(s)	109, 148, 205
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	43
BbvI	GCAGC	2 cut(s)	160, 162
BceAI	ACGGC	1 cut(s)	184
BfoI	RGCGCY	1 cut(s)	110
BisI	GCNGC	4 cut(s)	96, 149, 176, 179
BlsI	GCNGC	4 cut(s)	97, 150, 177, 180
BmiI	GGNNCC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	9
Bse118I	RCCGGY	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	63
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	2 cut(s)	160, 162
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	1 cut(s)	43
BsiSI	CCGG	2 cut(s)	41, 56
BslFI	GGGAC	1 cut(s)	49
BsmFI	GGGAC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	4 cut(s)	29, 47, 95, 179
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	64
BspLI	GGNNCC	1 cut(s)	45
BspT107I	GGYRCC	1 cut(s)	43
BsrFI	RCCGGY	1 cut(s)	40
BssAI	RCCGGY	1 cut(s)	40
BssECI	CCNNGG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	36
BstC8I	GCNNGC	3 cut(s)	42, 173, 183
BstDEI	CTNAG	1 cut(s)	72
BstH2I	RGCGCY	1 cut(s)	110
BstHHI	GCGC	3 cut(s)	109, 148, 205
BstMWI	GCNNNNNNNGC	4 cut(s)	37, 46, 104, 202
BstV1I	GCAGC	2 cut(s)	160, 162
BstXI	CCANNNNNNTGG	1 cut(s)	199
BsuRI	GGCC	1 cut(s)	5
Cac8I	GCNNGC	3 cut(s)	42, 173, 183
CfoI	GCGC	3 cut(s)	109, 148, 205
Cfr10I	RCCGGY	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	4 cut(s)	5, 59, 175, 185
CviKI_1	RGCY	4 cut(s)	5, 59, 175, 185
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	3
FaeI	CATG	1 cut(s)	191
FaiI	YATR	2 cut(s)	92, 189
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	4 cut(s)	96, 149, 176, 179
Fsp4HI	GCNGC	4 cut(s)	96, 149, 176, 179
FspI	TGCGCA	1 cut(s)	147
GlaI	GCGC	3 cut(s)	108, 147, 204
GluI	GCNGC	4 cut(s)	96, 149, 176, 179
HaeII	RGCGCY	1 cut(s)	110
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	2 cut(s)	41, 56
HhaI	GCGC	3 cut(s)	109, 148, 205
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	3 cut(s)	107, 146, 203
HinP1I	GCGC	3 cut(s)	107, 146, 203
HinfI	GANTC	2 cut(s)	14, 158
HpaII	CCGG	2 cut(s)	41, 56
Hpy166II	GTNNAC	1 cut(s)	162
Hpy8I	GTNNAC	1 cut(s)	162
Hpy99I	CGWCG	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	4 cut(s)	37, 46, 104, 202
HpyF3I	CTNAG	1 cut(s)	72
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	3 cut(s)	107, 146, 203
KroI	GCCGGC	1 cut(s)	40
KroNI	GCCGGC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	54, 69, 84, 167, 185
Lsp1109I	GCAGC	2 cut(s)	160, 162
MfeI	CAATTG	1 cut(s)	141
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	23, 167
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	6 cut(s)	4, 77, 97, 115, 148, 221
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	40
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	181
MspI	CCGG	2 cut(s)	41, 56
MunI	CAATTG	1 cut(s)	141
MwoI	GCNNNNNNNGC	4 cut(s)	37, 46, 104, 202
NaeI	GCCGGC	1 cut(s)	42
NgoMIV	GCCGGC	1 cut(s)	40
NlaIII	CATG	1 cut(s)	191
NlaIV	GGNNCC	1 cut(s)	45
NsbI	TGCGCA	1 cut(s)	147
PdiI	GCCGGC	1 cut(s)	42
PkrI	GCNGC	4 cut(s)	97, 150, 177, 180
PleI	GAGTC	2 cut(s)	22, 166
PpsI	GAGTC	2 cut(s)	22, 166
PspN4I	GGNNCC	1 cut(s)	45
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
SaqAI	TTAA	1 cut(s)	111
SatI	GCNGC	4 cut(s)	96, 149, 176, 179
SchI	GAGTC	2 cut(s)	23, 167
SetI	ASST	4 cut(s)	140, 167, 177, 213
Sse9I	AATT	1 cut(s)	141
SsiI	CCGC	4 cut(s)	29, 47, 95, 179
TaaI	ACNGT	1 cut(s)	36
TaqI	TCGA	2 cut(s)	128, 156
TasI	AATT	1 cut(s)	141
TauI	GCSGC	2 cut(s)	98, 181
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
TseI	GCWGC	2 cut(s)	148, 175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.