Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001238

Physical Location & Seq

Genomic Coordinates Forward (+)

31342840 .. 31344892

Gene Structure 2053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G330600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGCCACTGAGAACTCCGAAAACCCTCCGGCACCGCCTCCGCCAGCTCCCTCTCTCCCGCAGTATACAGAGATGATTATGGCGGCGATCGAGGCCCTGAACGACAGCAACGGGTCTAACAAGTCGGCAATCGCAACGTACATCGAGTCCACGTACGGCGATCTACCTCCGGCTCACGCCACACTTCTGGCGCACCACCTCAACAAGATGAAACAGAGCGGCGAGCTCGTCCTGGTCAAGAACAACTACATGAAGCCAGACCCGAACGCGCCGCCCAAGAGAGGCAGAGGCCGTCCTCCCAAGCCCAAGGTCCCGCTCCCACCTGGAACCGTTGTCTCGCCTCCCAGGCCACGTGGCAGGCCCCCGAAGCCCAGAGACCCGTTCTCTCCGCAAGCGGAGCCCAAGAGCCCTTCTGGGACTGGAAGGCCACGTGGACGCCCTCCCAAGAAGGCCAAAACGGCATCGGCTCCTCCTCAGGCTCCAGCTCCGGCTCCGGCTACTGGCGCGCCCAGAGGTAGAGGCAGGCCTCCTAAAGTGAAGCCCGCTGTGGCCCCGGTCGGCTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Linker_histone

Protein Analysis

189

Amino Acids

19.67

Weight (kDa)

10.52

Isoelectric Point (pI)

73.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14900
fragaria_vesca	FvH4_1g28760 FvH4_3g22350 FvH4_4g10240 FvH4_4g16250 FvH4_4g34011 FvH4_4g34030 FvH4_5g06490
malus_domestica	MD09G1263200.v1.1 MD13G1021100.v1.1 MD16G1022400.v1.1 MD17G1258400.v1.1
prunus_persica	Prupe.1G330600_v2.0.a1 Prupe.3G161100_v2.0.a1
pyrus_communis	pycom09g17750 pycom13g02000 pycom16g01970 pycom17g26030
rosa_chinensis	RchiOBHm_Chr3g0493151 RchiOBHm_Chr4g0443521
rosa_laevigata	RLG00000005921 RLG00000022725
rosa_multiflora	Rmu_sc0004094.1_g000037 Rmu_sc0009488.1_g000002 Rmu_sc0009954.1_g000002
rosa_roxburghii	Rroxscaffold_1G00033110 Rroxscaffold_5G00353160 Rroxscaffold_5G00384060 Rroxscaffold_6G00391770
rosa_rugosa	Rorug03G0259500 Rorug04G0347000
rosa_samantha	Rh2BG493600 Rh2BG493700 Rh2DG502600 Rh2DG502700 Rh3AG308500 Rh3BG344600 Rh3CG341800 Rh3DG343900 Rh4AG402600 Rh4BG208400 Rh4BG414100 Rh4CG429900 Rh4DG241300 Rh4DG409800 Rh4DG411100 Rh5BG528400 Rh5CG552800 Rh5DG132000 Rh5DG289700 Rh6CG100400
rosa_wichuraiana	Rw0G017400 Rw3G027130 Rw4G007110 Rw4G007140 Rw4G034710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AccBSI	CCGCTC	2 cut(s)	219, 316
AccI	GTMKAC	1 cut(s)	65
AccII	CGCG	2 cut(s)	269, 506
AcoI	YGGCCR	1 cut(s)	3
AcvI	CACGTG	2 cut(s)	353, 431
AcyI	GRCGYC	1 cut(s)	436
AfaI	GTAC	2 cut(s)	140, 155
AfiI	CCNNNNNNNGG	2 cut(s)	281, 500
AjnI	CCWGG	3 cut(s)	231, 322, 344
AluBI	AGCT	3 cut(s)	47, 226, 485
AluI	AGCT	3 cut(s)	47, 226, 485
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	2 cut(s)	340, 369
AoxI	GGCC	9 cut(s)	3, 93, 289, 347, 359, 425, 450, 524, 549
AscI	GGCGCGCC	1 cut(s)	504
AspLEI	GCGC	4 cut(s)	193, 271, 506, 508
AspS9I	GGNCC	4 cut(s)	94, 310, 360, 550
AsuC2I	CCSGG	1 cut(s)	554
AvaII	GGWCC	1 cut(s)	310
AxyI	CCTNAGG	1 cut(s)	474
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	31
BanII	GRGCYC	3 cut(s)	228, 402, 410
BbrPI	CACGTG	2 cut(s)	353, 431
Bbv12I	GWGCWC	1 cut(s)	228
BceAI	ACGGC	3 cut(s)	172, 276, 474
BciT130I	CCWGG	3 cut(s)	233, 324, 346
BcnI	CCSGG	1 cut(s)	554
BcoDI	GTCTC	2 cut(s)	340, 369
BglI	GCCNNNNNGGC	2 cut(s)	346, 458
BisI	GCNGC	3 cut(s)	84, 220, 272
BlsI	GCNGC	3 cut(s)	85, 221, 273
Bme1390I	CCNGG	4 cut(s)	233, 324, 346, 554
Bme18I	GGWCC	1 cut(s)	310
BmgT120I	GGNCC	4 cut(s)	94, 310, 360, 550
BmiI	GGNNCC	9 cut(s)	33, 312, 328, 362, 399, 468, 480, 492, 552
BmrFI	CCNGG	4 cut(s)	233, 324, 346, 554
BmsI	GCATC	1 cut(s)	470
BpmI	CTGGAG	1 cut(s)	465
BpuMI	CCSGG	1 cut(s)	554
BsaAI	YACGTR	3 cut(s)	153, 353, 431
BsaHI	GRCGYC	1 cut(s)	436
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	3 cut(s)	306, 344, 552
Bsc4I	CCNNNNNNNGG	2 cut(s)	281, 500
Bse1I	ACTGG	2 cut(s)	424, 505
Bse21I	CCTNAGG	1 cut(s)	474
BseBI	CCWGG	3 cut(s)	233, 324, 346
BseDI	CCNNGG	3 cut(s)	306, 344, 552
BseLI	CCNNNNNNNGG	2 cut(s)	281, 500
BseMII	CTCAG	1 cut(s)	488
BseNI	ACTGG	2 cut(s)	424, 505
BsePI	GCGCGC	1 cut(s)	504
BseRI	GAGGAG	2 cut(s)	459, 462
Bsh1236I	CGCG	2 cut(s)	269, 506
Bsh1285I	CGRYCG	2 cut(s)	90, 558
BshFI	GGCC	9 cut(s)	5, 95, 291, 349, 361, 427, 452, 526, 551
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	2 cut(s)	90, 558
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	5 cut(s)	29, 170, 488, 494, 554
BsiWI	CGTACG	1 cut(s)	153
BslFI	GGGAC	2 cut(s)	296, 430
BslI	CCNNNNNNNGG	2 cut(s)	281, 500
BsmAI	GTCTC	2 cut(s)	340, 369
BsmFI	GGGAC	2 cut(s)	296, 430
BsnI	GGCC	9 cut(s)	5, 95, 291, 349, 361, 427, 452, 526, 551
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	3 cut(s)	228, 402, 410
Bsp143I	GATC	2 cut(s)	87, 160
BspANI	GGCC	9 cut(s)	5, 95, 291, 349, 361, 427, 452, 526, 551
BspCNI	CTCAG	1 cut(s)	487
BspFNI	CGCG	2 cut(s)	269, 506
BspLI	GGNNCC	9 cut(s)	33, 312, 328, 362, 399, 468, 480, 492, 552
BspT107I	GGYRCC	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	369
BsrBI	CCGCTC	2 cut(s)	219, 316
BsrI	ACTGG	2 cut(s)	424, 505
BssECI	CCNNGG	3 cut(s)	306, 344, 552
BssHII	GCGCGC	1 cut(s)	504
BssMI	GATC	2 cut(s)	87, 160
BssNAI	GTATAC	1 cut(s)	66
BssNI	GRCGYC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	306
Bst1107I	GTATAC	1 cut(s)	66
Bst2UI	CCWGG	3 cut(s)	233, 324, 346
Bst4CI	ACNGT	1 cut(s)	331
BstACI	GRCGYC	1 cut(s)	436
BstBAI	YACGTR	3 cut(s)	153, 353, 431
BstC8I	GCNNGC	7 cut(s)	45, 224, 359, 393, 506, 524, 543
BstDEI	CTNAG	2 cut(s)	9, 474
BstFNI	CGCG	2 cut(s)	269, 506
BstHHI	GCGC	4 cut(s)	193, 271, 506, 508
BstKTI	GATC	2 cut(s)	90, 163
BstMAI	GTCTC	2 cut(s)	340, 369
BstMBI	GATC	2 cut(s)	87, 160
BstMCI	CGRYCG	2 cut(s)	90, 558
BstMWI	GCNNNNNNNGC	6 cut(s)	92, 346, 367, 397, 458, 503
BstNI	CCWGG	3 cut(s)	233, 324, 346
BstSCI	CCNGG	4 cut(s)	231, 322, 344, 552
BstUI	CGCG	2 cut(s)	269, 506
BstXI	CCANNNNNNTGG	1 cut(s)	187
BstZ17I	GTATAC	1 cut(s)	66
Bsu36I	CCTNAGG	1 cut(s)	474
BsuRI	GGCC	9 cut(s)	5, 95, 291, 349, 361, 427, 452, 526, 551
BtsIMutI	CAGTG	1 cut(s)	6
Cac8I	GCNNGC	7 cut(s)	45, 224, 359, 393, 506, 524, 543
CfoI	GCGC	4 cut(s)	193, 271, 506, 508
Cfr13I	GGNCC	4 cut(s)	94, 310, 360, 550
CseI	GACGC	1 cut(s)	444
Csp6I	GTAC	2 cut(s)	139, 154
CviAII	CATG	1 cut(s)	250
CviQI	GTAC	2 cut(s)	139, 154
DdeI	CTNAG	2 cut(s)	9, 474
DpnI	GATC	2 cut(s)	89, 162
DpnII	GATC	2 cut(s)	87, 160
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	226
Eco130I	CCWWGG	1 cut(s)	306
Eco147I	AGGCCT	1 cut(s)	526
Eco24I	GRGCYC	3 cut(s)	228, 402, 410
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	310
Eco53kI	GAGCTC	1 cut(s)	226
Eco72I	CACGTG	2 cut(s)	353, 431
Eco81I	CCTNAGG	1 cut(s)	474
EcoICRI	GAGCTC	1 cut(s)	226
EcoO109I	RGGNCCY	3 cut(s)	94, 310, 360
EcoRII	CCWGG	3 cut(s)	231, 322, 344
EcoT14I	CCWWGG	1 cut(s)	306
EcoT38I	GRGCYC	3 cut(s)	228, 402, 410
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	66, 80, 251
FaqI	GGGAC	2 cut(s)	296, 430
FatI	CATG	1 cut(s)	249
FauI	CCCGC	3 cut(s)	66, 321, 550
FblI	GTMKAC	1 cut(s)	65
Fnu4HI	GCNGC	3 cut(s)	84, 220, 272
FriOI	GRGCYC	3 cut(s)	228, 402, 410
Fsp4HI	GCNGC	3 cut(s)	84, 220, 272
GlaI	GCGC	4 cut(s)	192, 270, 505, 507
GluI	GCNGC	3 cut(s)	84, 220, 272
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	9 cut(s)	5, 95, 291, 349, 361, 427, 452, 526, 551
HapII	CCGG	5 cut(s)	29, 170, 488, 494, 554
HgaI	GACGC	1 cut(s)	444
HhaI	GCGC	4 cut(s)	193, 271, 506, 508
Hin1I	GRCGYC	1 cut(s)	436
Hin1II	CATG	1 cut(s)	253
Hin6I	GCGC	4 cut(s)	191, 269, 504, 506
HinP1I	GCGC	4 cut(s)	191, 269, 504, 506
HinfI	GANTC	1 cut(s)	146
HpaII	CCGG	5 cut(s)	29, 170, 488, 494, 554
Hpy166II	GTNNAC	3 cut(s)	66, 150, 434
Hpy188I	TCNGA	1 cut(s)	19
Hpy188III	TCNNGA	1 cut(s)	238
Hpy8I	GTNNAC	3 cut(s)	66, 150, 434
HpyAV	CCTTC	3 cut(s)	417, 420, 442
HpyCH4III	ACNGT	1 cut(s)	331
HpyCH4IV	ACGT	4 cut(s)	137, 152, 352, 430
HpyF10VI	GCNNNNNNNGC	6 cut(s)	92, 346, 367, 397, 458, 503
HpyF3I	CTNAG	2 cut(s)	9, 474
HpySE526I	ACGT	4 cut(s)	137, 152, 352, 430
Hsp92I	GRCGYC	1 cut(s)	436
Hsp92II	CATG	1 cut(s)	253
HspAI	GCGC	4 cut(s)	191, 269, 504, 506
Kzo9I	GATC	2 cut(s)	87, 160
LmnI	GCTCC	7 cut(s)	52, 321, 397, 472, 484, 490, 496
LweI	GCATC	1 cut(s)	470
MaeII	ACGT	4 cut(s)	137, 152, 352, 430
MalI	GATC	2 cut(s)	89, 162
MbiI	CCGCTC	2 cut(s)	219, 316
MboI	GATC	2 cut(s)	87, 160
MhlI	GDGCHC	3 cut(s)	228, 402, 410
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	155
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	5 cut(s)	29, 170, 488, 494, 554
MspR9I	CCNGG	4 cut(s)	233, 324, 346, 554
MvaI	CCWGG	3 cut(s)	233, 324, 346
MvnI	CGCG	2 cut(s)	269, 506
MwoI	GCNNNNNNNGC	6 cut(s)	92, 346, 367, 397, 458, 503
NciI	CCSGG	1 cut(s)	554
NdeII	GATC	2 cut(s)	87, 160
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	9 cut(s)	33, 312, 328, 362, 399, 468, 480, 492, 552
PalAI	GGCGCGCC	1 cut(s)	504
PauI	GCGCGC	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	526
Pfl23II	CGTACG	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	85, 221, 273
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	154
PmaCI	CACGTG	2 cut(s)	353, 431
PmlI	CACGTG	2 cut(s)	353, 431
PpsI	GAGTC	1 cut(s)	154
Ppu21I	YACGTR	3 cut(s)	153, 353, 431
PpuMI	RGGWCCY	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	228
Psp5II	RGGWCCY	1 cut(s)	310
Psp6I	CCWGG	3 cut(s)	231, 322, 344
PspCI	CACGTG	2 cut(s)	353, 431
PspGI	CCWGG	3 cut(s)	231, 322, 344
PspLI	CGTACG	1 cut(s)	153
PspN4I	GGNNCC	9 cut(s)	33, 312, 328, 362, 399, 468, 480, 492, 552
PspPI	GGNCC	4 cut(s)	94, 310, 360, 550
PspPPI	RGGWCCY	1 cut(s)	310
PteI	GCGCGC	1 cut(s)	504
PvuI	CGATCG	1 cut(s)	90
RsaI	GTAC	2 cut(s)	140, 155
RsaNI	GTAC	2 cut(s)	139, 154
SacI	GAGCTC	1 cut(s)	228
SatI	GCNGC	3 cut(s)	84, 220, 272
Sau3AI	GATC	2 cut(s)	87, 160
Sau96I	GGNCC	4 cut(s)	94, 310, 360, 550
SchI	GAGTC	1 cut(s)	155
ScrFI	CCNGG	4 cut(s)	233, 324, 346, 554
SduI	GDGCHC	3 cut(s)	228, 402, 410
SfaNI	GCATC	1 cut(s)	470
SgsI	GGCGCGCC	1 cut(s)	504
SinI	GGWCC	1 cut(s)	310
SseBI	AGGCCT	1 cut(s)	526
SstI	GAGCTC	1 cut(s)	228
StuI	AGGCCT	1 cut(s)	526
StyD4I	CCNGG	4 cut(s)	231, 322, 344, 552
StyI	CCWWGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	331
TaiI	ACGT	4 cut(s)	140, 155, 355, 433
TaqI	TCGA	2 cut(s)	90, 144
TauI	GCSGC	3 cut(s)	86, 222, 274
TscAI	CASTG	1 cut(s)	13
TspDTI	ATGAA	2 cut(s)	224, 266
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	310
XmiI	GTMKAC	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.